Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1961.8 990 100.0
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 0.0e+00 1937.2 990 98.6
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 0.0e+00 1729.1 991 87.2
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 0.0e+00 1706.8 989 85.9
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1679.1 991 84.6
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 0.0e+00 1679.1 991 84.6
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 0.0e+00 1674.4 991 84.6
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 0.0e+00 1674.1 991 84.8
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1670.6 1000 83.6
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1664.4 987 84.6
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 0.0e+00 1661.0 988 83.8
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 0.0e+00 1658.3 991 83.1
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1657.9 991 83.4
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 0.0e+00 1651.3 991 82.9
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 0.0e+00 1651.0 991 83.2
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 0.0e+00 1651.0 984 84.1
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 0.0e+00 1650.2 991 83.4
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1646.3 991 83.2
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 0.0e+00 1645.9 992 83.2
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 0.0e+00 1644.8 991 82.1
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1643.6 999 82.7
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 0.0e+00 1642.1 991 82.1
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1639.8 991 81.7
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 0.0e+00 1638.2 991 82.2
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 0.0e+00 1636.3 991 81.8
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1632.8 1015 81.1
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1632.1 992 82.8
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1630.2 1015 80.9
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1627.1 992 81.9
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 0.0e+00 1627.1 992 82.3
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 0.0e+00 1626.3 991 81.7
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 0.0e+00 1624.8 991 82.0
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 0.0e+00 1622.1 991 81.3
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 0.0e+00 1621.7 1031 79.5
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1615.9 1017 79.9
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 0.0e+00 1615.9 991 81.1
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1615.5 989 81.2
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 0.0e+00 1613.6 1015 80.0
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1610.1 991 80.5
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1609.7 991 80.7
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 0.0e+00 1607.8 995 81.3
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 0.0e+00 1606.3 991 81.1
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 0.0e+00 1602.0 991 80.9
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 0.0e+00 1599.7 997 80.6
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1599.3 991 80.7
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 0.0e+00 1598.9 991 80.8
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 0.0e+00 1598.2 991 80.1
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 0.0e+00 1596.3 975 81.4
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 0.0e+00 1593.6 989 80.3
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 0.0e+00 1593.6 991 80.5
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 0.0e+00 1591.6 988 80.3
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 0.0e+00 1589.3 939 85.1
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 0.0e+00 1588.9 991 79.5
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 0.0e+00 1588.2 993 80.6
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 0.0e+00 1583.5 990 80.4
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1583.2 993 79.3
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 0.0e+00 1582.4 987 79.1
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 0.0e+00 1582.0 993 79.5
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 0.0e+00 1580.8 1079 75.1
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1579.3 1086 74.5
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 0.0e+00 1578.1 995 79.0
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 0.0e+00 1576.2 988 79.7
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1574.3 1003 78.2
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 0.0e+00 1574.3 988 79.5
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 0.0e+00 1573.9 991 78.9
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 0.0e+00 1572.8 992 78.8
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 0.0e+00 1570.1 991 78.7
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1570.1 993 78.8
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1568.9 991 78.4
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 0.0e+00 1565.8 990 79.9
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1560.4 1006 77.0
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 0.0e+00 1560.0 991 79.5
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1558.5 996 78.2
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 0.0e+00 1557.0 1000 79.0
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 0.0e+00 1556.2 991 79.6
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 0.0e+00 1555.8 1006 77.1
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 0.0e+00 1554.7 991 77.8
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 0.0e+00 1551.6 997 77.4
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 0.0e+00 1548.1 991 77.9
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 0.0e+00 1545.8 1008 76.6
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 0.0e+00 1541.9 981 78.8
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 0.0e+00 1537.3 934 81.4
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1520.8 988 77.0
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 0.0e+00 1516.9 1026 75.6
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 0.0e+00 1514.2 1041 73.8
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 0.0e+00 1494.6 1019 75.4
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 0.0e+00 1471.8 929 80.3
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 0.0e+00 1466.4 990 74.7
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1465.7 991 75.7
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1446.8 897 79.9
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 0.0e+00 1440.2 992 73.0
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 0.0e+00 1428.3 996 72.7
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 0.0e+00 1417.1 855 81.8
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 0.0e+00 1380.9 818 85.5
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 0.0e+00 1344.3 790 85.2
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 0.0e+00 1339.3 794 84.8
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 0.0e+00 1321.6 786 83.1
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 0.0e+00 1311.2 857 77.7
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 0.0e+00 1310.0 954 71.4
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 0.0e+00 1309.7 997 70.2
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 0.0e+00 1290.8 763 85.2
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 0.0e+00 1288.1 793 80.7
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 0.0e+00 1273.5 773 83.3
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 0.0e+00 1239.9 764 82.6
Pp3c14_1240 Physcomitrium patens HOM05D004263 ORTHO05D004931 0.0e+00 1195.3 989 61.1
Mapoly0011s0120 Marchantia polymorpha HOM05D004263 ORTHO05D004931 0.0e+00 1177.2 983 60.3
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 0.0e+00 1169.8 767 78.2
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 0.0e+00 1119.4 762 76.5
SMO239G0082 Selaginella moellendorffii HOM05D004263 ORTHO05D004931 7.9e-295 1017.3 986 52.4
AagrBONN_evm.TU.Sc2ySwM_228.3812 Anthoceros agrestis HOM05D004263 ORTHO05D004931 6.5e-289 997.7 791 61.9
Zm00001eb412950 Zea mays HOM05D004263 ORTHO05D004931 8.2e-284 980.7 670 75.7
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 1.4e-283 979.9 643 76.8
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 4.5e-282 974.9 565 87.4
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 3.8e-281 971.8 612 79.2
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.2e-244 849.7 575 74.8
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 3.7e-244 849.0 520 80.4
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 8.6e-241 837.8 612 68.1
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 7.3e-240 834.7 517 82.0
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 8.4e-196 688.3 421 78.1
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 8.5e-164 582.0 337 84.6
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.2e-149 535.0 338 81.1
Nitab4.5_0000025g0510 Nicotiana tabacum HOM05D004263 ORTHO05D004931 1.0e-140 505.4 282 87.9
PRCOL_00001544 Prasinoderma coloniale HOM05D004263 ORTHO05D004931 2.3e-124 451.1 1063 31.0
CAN.G224.16 Capsicum annuum HOM05D004263 ORTHO05D004931 3.2e-118 430.6 249 86.3
Cfa022578 Carpinus fangiana HOM05D004263 ORTHO05D004931 4.3e-107 393.7 1033 28.7
Cre07.g328550 Chlamydomonas reinhardtii HOM05D004263 ORTHO05D004931 9.9e-104 382.5 1266 26.9
MSTRG.11471 Avicennia marina HOM05D004263 ORTHO05D004931 3.5e-101 374.0 231 75.3
CAN.G2148.1 Capsicum annuum HOM05D004263 ORTHO05D004931 1.6e-98 365.2 230 75.2
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 4.9e-95 353.6 306 62.7
Lj1C736T2 Lonicera japonica HOM05D004263 ORTHO05D004931 3.3e-91 340.9 205 79.5
BcaC05g25136 Brassica carinata HOM05D004263 ORTHO05D004931 8.4e-87 326.2 208 73.6
CAN.G224.18 Capsicum annuum HOM05D004263 ORTHO05D004931 2.7e-85 321.2 230 69.6
CBR_g50947 Chara braunii HOM05D004263 ORTHO05D004931 2.9e-79 301.2 284 57.0
PGSC0003DMG400025399 Solanum tuberosum HOM05D004263 ORTHO05D004931 1.2e-77 295.8 179 78.8
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 4.8e-74 283.9 190 74.7
CSS0037177 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 4.2e-70 270.8 206 68.4
CBR_g40703 Chara braunii HOM05D004263 ORTHO05D004931 1.6e-69 268.9 441 38.3
Cpa.g.sc34.89 Carica papaya HOM05D004263 ORTHO05D004931 5.3e-65 253.8 154 76.6
Oeu001692.1 Olea europaea HOM05D004263 ORTHO05D004931 4.1e-57 227.6 154 70.8
Medtr8g471030 Medicago truncatula HOM05D004263 ORTHO05D004931 2.0e-51 208.8 128 73.4
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 2.7e-45 188.3 140 67.9
CBR_g40701 Chara braunii HOM05D004263 ORTHO05D004931 1.3e-42 179.5 163 60.1
CSS0002414 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 4.2e-38 164.5 174 57.5
Atru.chr3.3152 Acer truncatum HOM05D004263 ORTHO05D004931 9.5e-38 163.3 122 68.0
SEGI_40242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.8e-37 161.8 145 60.0
SEGI_30776 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.5e-35 156.0 119 65.5
SEGI_15765 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 2.0e-35 155.6 103 73.8
SEGI_16142 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.9e-30 139.0 104 72.1
CAN.G224.15 Capsicum annuum HOM05D004263 ORTHO05D004931 3.6e-29 134.8 88 73.9
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 8.9e-28 130.2 131 59.5
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 2.0e-27 129.0 127 59.8
SEGI_10945 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 7.5e-27 127.1 81 71.6
CAN.G2148.3 Capsicum annuum HOM05D004263 ORTHO05D004931 2.7e-24 118.6 76 76.3
CAN.G224.17 Capsicum annuum HOM05D004263 ORTHO05D004931 3.9e-23 114.8 75 76.0
CAN.G666.1 Capsicum annuum HOM05D004263 ORTHO05D004931 1.5e-22 112.8 101 63.4
SEGI_22414 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.5e-22 112.8 108 57.4
CSS0009942 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.9e-22 112.5 80 80.0
SEGI_06467 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 1.9e-22 112.5 91 64.8
MD02G1222100 Malus domestica HOM05D004263 ORTHO05D004931 7.0e-17 94.0 54 77.8
Nitab4.5_0000025g0500 Nicotiana tabacum HOM05D004263 ORTHO05D004931 7.8e-16 90.5 54 77.8
unitig_0.g1434 Utricularia gibba HOM05D004263 ORTHO05D004931 1.0e-15 90.1 88 55.7
SEGI_34242 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 5.0e-15 87.8 103 49.5
SEGI_32704 Sequoiadendron giganteum HOM05D004263 ORTHO05D004931 5.6e-14 84.3 69 53.6
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 6.2e-13 80.9 180 33.9
MCO10G067 Micromonas commoda HOM05D004263 ORTHO05D004931 4.4e-11 74.7 233 24.9
Glyma.08G214950 Glycine max HOM05D004263 ORTHO05D004931 6.6e-07 60.8 61 54.1
TPR.G27092 Trifolium pratense HOM05D004263 ORTHO05D004931 1.5e-06 59.7 50 60.0


User provided reference genes

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