Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 3636.3 1862 100.0
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 3528.0 1824 99.0
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 2542.3 1914 71.5
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 2533.1 1897 71.5
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2522.7 1914 71.1
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2422.5 1916 68.5
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 2413.6 1904 68.0
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 2409.8 1879 69.3
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 2395.5 1918 68.4
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 2389.0 1716 73.5
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 2388.2 1910 67.9
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 2387.8 1907 68.4
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2381.3 1901 67.9
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2380.9 1897 67.8
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 2365.1 1883 68.2
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 2362.8 1901 67.6
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 2362.0 1906 67.3
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 2360.5 1905 67.4
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 2359.7 1918 66.3
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 2345.5 1889 68.5
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2341.6 1901 67.2
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 2335.8 1892 67.0
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 2335.5 1903 66.5
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2328.9 1896 67.0
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 2328.5 1886 68.1
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 2327.0 1897 67.3
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 2318.9 1900 66.3
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 2314.7 1900 66.7
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2313.1 1897 66.2
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 2292.3 1887 65.8
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2290.4 1902 66.3
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 2290.4 1890 66.4
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 2289.6 1893 66.2
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2286.9 1896 65.7
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 2286.5 1887 66.5
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 2284.6 1905 66.3
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 2279.6 2112 60.7
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2278.4 1912 65.5
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 2277.3 1885 66.8
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2268.4 1897 65.5
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 2266.1 1956 64.4
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2258.8 1936 64.4
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 2246.9 1883 65.1
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2244.9 1895 65.3
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2232.6 1906 65.4
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 2224.5 1902 65.8
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 2213.7 1911 65.0
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2209.9 1992 62.1
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 2202.2 1926 64.1
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 2201.8 1913 64.8
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2192.2 1887 64.1
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 2188.7 1894 63.8
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 2183.7 1886 64.0
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 2170.6 1887 64.4
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 2163.3 1750 68.5
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2159.0 1889 64.2
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 2155.9 1881 63.8
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 2152.9 1872 64.6
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 2152.1 1876 63.9
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 2146.3 2110 59.2
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2143.6 2233 55.4
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2142.9 1906 63.1
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2139.8 1883 63.1
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 2125.1 1888 63.0
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2121.7 1907 62.3
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2119.4 1889 62.4
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 2119.0 1880 62.6
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2115.5 1784 65.9
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 2110.5 1746 67.3
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2109.3 1881 62.7
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 2098.2 1871 62.4
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 2096.6 1878 62.4
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 2095.9 1907 61.9
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 2093.9 1879 62.3
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 2087.0 1980 60.4
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2085.5 1905 61.7
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2079.3 1866 62.0
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 2077.4 1864 62.3
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2070.4 1911 61.3
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2060.4 1910 61.3
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2048.5 1927 59.6
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2037.7 1882 61.6
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 2033.8 1975 58.8
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 2027.7 1932 60.7
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 1986.8 1792 62.4
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 1982.6 1887 59.4
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 1946.4 1329 74.6
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1905.6 1850 57.9
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 0.0e+00 1883.6 1991 54.9
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 0.0e+00 1829.7 1985 53.1
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1819.7 1522 67.1
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1784.2 1503 66.7
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 0.0e+00 1759.6 1825 54.7
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 0.0e+00 1709.1 1876 53.1
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 0.0e+00 1631.3 1881 52.2
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1440.2 990 74.9
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1374.8 1276 62.5
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1366.3 1224 63.3
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1355.5 1301 61.4
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 0.0e+00 1349.7 1100 66.4
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 0.0e+00 1296.2 1475 53.5
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 1232.6 1218 59.9
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 0.0e+00 1231.5 852 74.2
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 0.0e+00 1113.2 943 64.4
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.5e-307 1060.4 1131 56.8
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 1.3e-306 1057.4 1258 47.0
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 7.7e-291 1005.0 1103 55.8
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 1.4e-281 974.2 676 73.4
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 1.6e-275 954.1 699 71.8
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.7e-226 791.2 956 52.8
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 2.5e-217 760.8 1323 36.5
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 2.8e-216 757.3 1114 44.6
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 5.3e-215 753.1 855 55.8
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 4.2e-196 690.3 453 79.2
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 8.5e-165 586.3 375 77.9
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 5.5e-156 557.0 1168 33.3
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 2.8e-152 544.7 367 75.2
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 9.4e-148 529.6 370 73.8
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 3.3e-140 504.6 368 70.9
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.2e-110 406.4 501 51.5
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 2.5e-108 398.7 300 67.0
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 4.3e-100 371.3 570 48.2
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 1.9e-92 345.9 214 78.0
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 2.0e-89 335.9 299 61.9
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 1.4e-87 329.7 1129 26.7
Rhsim09G0087200 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.3e-83 316.6 199 79.9
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 3.8e-80 305.1 240 67.5
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 2.5e-79 302.4 522 46.6
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 1.9e-76 292.7 1808 24.2
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 7.4e-76 290.8 263 61.2
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 2.7e-70 272.3 265 56.2
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 4.1e-66 258.5 170 73.5
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 6.9e-58 231.1 517 34.6
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 5.9e-57 228.0 226 57.5
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.1e-54 219.5 238 53.8
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 7.9e-54 217.6 191 61.8
SHI04410 Sapria himalayana HOM05D003986 ORTHO05D004916 2.0e-52 213.0 163 63.8
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.8e-50 206.5 170 59.4
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 3.1e-50 205.7 249 51.8
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.6e-49 203.4 277 48.7
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 5.0e-40 171.8 224 49.6
SHI04405 Sapria himalayana HOM05D003986 ORTHO05D004916 1.6e-33 150.2 107 70.1
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 3.2e-31 142.5 89 75.3
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 2.3e-29 136.3 120 62.5
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 1.2e-28 134.0 415 33.7
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 9.8e-28 131.0 110 66.4
Ciclev10015223m.g Citrus clementina HOM05D000271 ORTHO05D002152 2.2e-27 129.8 115 63.5
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 1.4e-26 127.1 75 85.3
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 1.8e-26 126.7 105 68.6
Cpa.g.c39725 Carica papaya HOM05D003986 ORTHO05D004916 1.6e-25 123.6 87 66.7
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 1.7e-24 120.2 69 88.4
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 5.0e-24 118.6 168 48.2
BcaC05g26498 Brassica carinata HOM05D003986 ORTHO05D004916 8.9e-21 107.8 76 75.0
Atru.chr2.736 Acer truncatum HOM05D003986 ORTHO05D004916 2.0e-20 106.7 88 60.2
Cpa.g.sc2.147 Carica papaya HOM05D003986 ORTHO05D004916 5.7e-20 105.1 61 82.0
CSS0042784 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 9.8e-20 104.4 82 58.5
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 3.7e-19 102.4 143 46.9
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 7.0e-18 98.2 107 54.2
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 1.0e-16 94.4 58 79.3
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 1.0e-16 94.4 58 79.3
TAR371G1101 Trochodendron aralioides HOM05D003986 ORTHO05D004916 3.9e-16 92.4 119 46.2
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 8.6e-16 91.3 58 77.6
Lalb_Chr05g0227571 Lupinus albus HOM05D003986 ORTHO05D004916 6.8e-13 81.6 41 90.2
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 1.4e-10 73.9 48 70.8
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 1.4e-10 73.9 50 80.0
TPR.G39728 Trifolium pratense HOM05D003986 ORTHO05D004916 1.9e-10 73.6 70 58.6
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 3.2e-10 72.8 82 50.0
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 7.0e-10 71.6 74 54.1
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 9.2e-10 71.2 36 83.3
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 6.0e-09 68.6 73 53.4
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 1.1e-07 64.3 73 45.2
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 1.1e-07 64.3 55 56.4
Sabra18G0053300 Salix brachista HOM05D003986 ORTHO05D004916 2.1e-06 60.1 59 54.2


User provided reference genes

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