Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G5348 Papaver somniferum HOM05D004649 ORTHO05D005446 8.5e-238 826.6 423 100.0
TAR371G0838 Trochodendron aralioides HOM05D004649 ORTHO05D005446 4.0e-171 605.1 426 73.0
PSO017G3153 Papaver somniferum HOM05D004649 ORTHO05D005446 2.3e-166 589.3 398 79.1
Dinv33366 Davidia involucrata HOM05D004649 ORTHO05D005446 6.2e-164 581.3 426 69.5
GSVIVG01001824001 Vitis vinifera HOM05D004649 ORTHO05D005446 3.1e-163 578.9 426 69.0
QL02p072453 Quercus lobata HOM05D004649 ORTHO05D005446 4.0e-163 578.6 425 69.4
CSS0030171 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 4.5e-162 575.1 426 69.0
CSS0047966 Camellia sinensis var. sinensis HOM05D004649 ORTHO05D005446 7.6e-162 574.3 426 69.0
Nitab4.5_0000559g0250 Nicotiana tabacum HOM05D004649 ORTHO05D005446 6.4e-161 571.2 426 69.2
PGSC0003DMG400020222 Solanum tuberosum HOM05D004649 ORTHO05D005446 1.9e-160 569.7 426 67.8
Sopen02g038570 Solanum pennellii HOM05D004649 ORTHO05D005446 3.2e-160 568.9 426 68.1
Dinv25679 Davidia involucrata HOM05D004649 ORTHO05D005446 5.4e-160 568.2 424 68.6
Solyc02g093920.2 Solanum lycopersicum HOM05D004649 ORTHO05D005446 5.4e-160 568.2 426 67.8
Glyma.05G075400 Glycine max HOM05D004649 ORTHO05D005446 7.1e-160 567.8 426 68.8
Nitab4.5_0001031g0020 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.7e-159 565.8 426 67.8
CiPaw.04G034500 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.3e-158 563.5 422 68.2
TWI36G0899 Tripterygium wilfordii HOM05D004649 ORTHO05D005446 3.0e-158 562.4 426 67.4
CANSAT64G0679 Cannabis sativa HOM05D004649 ORTHO05D005446 6.7e-158 561.2 426 67.4
Glyma.19G075700 Glycine max HOM05D004649 ORTHO05D005446 1.9e-157 559.7 426 67.6
Nitab4.5_0006819g0030 Nicotiana tabacum HOM05D004649 ORTHO05D005446 1.3e-156 557.0 433 67.0
VMungo1080G0439 Vigna mungo HOM05D004649 ORTHO05D005446 2.1e-156 556.2 426 67.1
Ciclev10015345m.g Citrus clementina HOM05D004649 ORTHO05D005446 4.8e-156 555.1 426 66.9
MSTRG.15559 Avicennia marina HOM05D004649 ORTHO05D005446 8.1e-156 554.3 426 66.4
Actinidia05924 Actinidia chinensis HOM05D004649 ORTHO05D005446 1.4e-155 553.5 427 66.3
Prupe.3G302400 Prunus persica HOM05D004649 ORTHO05D005446 1.8e-155 553.1 425 66.6
RcHm_v2.0_Chr2g0174731 Rosa chinensis HOM05D004649 ORTHO05D005446 9.0e-155 550.8 424 66.5
Rhsim10G0008900 Rhododendron simsii HOM05D004649 ORTHO05D005446 3.4e-154 548.9 423 66.0
Atru.chr6.2512 Acer truncatum HOM05D004649 ORTHO05D005446 5.8e-154 548.1 426 65.3
CAN.G473.77 Capsicum annuum HOM05D004649 ORTHO05D005446 7.6e-154 547.7 426 65.3
Cc07_g00570 Coffea canephora HOM05D004649 ORTHO05D005446 7.6e-154 547.7 428 66.6
MELO3C008213.2 Cucumis melo HOM05D004649 ORTHO05D005446 7.6e-154 547.7 426 67.1
DCAR_011306 Daucus carota HOM05D004649 ORTHO05D005446 7.6e-154 547.7 426 64.3
AUR62036815 Chenopodium quinoa HOM05D004649 ORTHO05D005446 9.9e-154 547.4 425 65.4
Gohir.A09G034200 Gossypium hirsutum HOM05D004649 ORTHO05D005446 9.9e-154 547.4 426 66.0
Gorai.006G040000 Gossypium raimondii HOM05D004649 ORTHO05D005446 9.9e-154 547.4 426 66.0
vmacro05936 Vaccinium macrocarpon HOM05D004649 ORTHO05D005446 1.7e-153 546.6 424 65.3
Migut.K01446 Erythranthe guttata HOM05D004649 ORTHO05D005446 2.9e-153 545.8 426 66.4
Manes.17G106100 Manihot esculenta HOM05D004649 ORTHO05D005446 4.9e-153 545.0 426 66.0
Potri.001G334200 Populus trichocarpa HOM05D004649 ORTHO05D005446 4.9e-153 545.0 426 65.7
Thecc.04G029900 Theobroma cacao HOM05D004649 ORTHO05D005446 4.9e-153 545.0 423 65.0
AUR62033709 Chenopodium quinoa HOM05D004649 ORTHO05D005446 8.4e-153 544.3 425 64.5
CsaV3_6G001150 Cucumis sativus L. HOM05D004649 ORTHO05D005446 8.4e-153 544.3 426 66.4
MD17G1015500 Malus domestica HOM05D004649 ORTHO05D005446 1.9e-152 543.1 425 65.2
arahy.Tifrunner.gnm1.ann1.2RTQ1W Arachis hypogaea HOM05D004649 ORTHO05D005446 2.4e-152 542.7 428 65.9
Gorai.012G088900 Gossypium raimondii HOM05D004649 ORTHO05D005446 2.4e-152 542.7 426 66.0
Phvul.004G055700 Phaseolus vulgaris HOM05D004649 ORTHO05D005446 2.4e-152 542.7 426 65.5
Aqoxy5G03494 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 9.3e-152 540.8 430 65.1
Gohir.A05G340700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.1e-151 539.7 426 65.5
HanXRQChr14g0450901 Helianthus annuus HOM05D004649 ORTHO05D005446 3.5e-151 538.9 426 64.8
Gohir.D04G079000 Gossypium hirsutum HOM05D004649 ORTHO05D005446 4.6e-151 538.5 426 65.5
MD09G1015400 Malus domestica HOM05D004649 ORTHO05D005446 1.3e-150 537.0 425 64.7
FvH4_6g52990 Fragaria vesca HOM05D004649 ORTHO05D005446 2.3e-150 536.2 423 64.5
FAN02G2492 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.0e-150 535.8 423 65.0
FAN09G0187 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.0e-150 535.8 423 64.5
Ca_04417_v3 Cicer arietinum L. HOM05D004649 ORTHO05D005446 5.1e-150 535.0 427 64.4
Lalb_Chr02g0157841 Lupinus albus HOM05D004649 ORTHO05D005446 5.1e-150 535.0 428 65.2
SGA_v2.0_scaffold154G37160 Striga asiatica HOM05D004649 ORTHO05D005446 1.1e-149 533.9 422 64.5
arahy.Tifrunner.gnm1.ann1.B3K3FC Arachis hypogaea HOM05D004649 ORTHO05D005446 2.5e-149 532.7 435 64.4
CDE09G0552 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 9.6e-149 530.8 423 63.6
Duzib264G0046 Durio zibethinus HOM05D004649 ORTHO05D005446 9.6e-149 530.8 426 64.1
Gohir.D09G035100 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.0e-146 523.1 426 63.8
PGR142G2348 Punica granatum HOM05D004649 ORTHO05D005446 3.4e-146 522.3 421 63.2
Eucgr.I01664 Eucalyptus grandis HOM05D004649 ORTHO05D005446 4.5e-146 521.9 402 66.2
CAN.G1965.13 Capsicum annuum HOM05D004649 ORTHO05D005446 7.6e-146 521.2 425 64.2
Lj1g0022023 Lotus japonicus HOM05D004649 ORTHO05D005446 1.3e-145 520.4 428 62.9
CiPaw.03G052200 Carya illinoinensis HOM05D004649 ORTHO05D005446 1.7e-145 520.0 426 63.6
Lsat_1_v5_gn_2_93941 Lactuca sativa HOM05D004649 ORTHO05D005446 1.7e-145 520.0 424 63.9
TPR.G7524 Trifolium pratense HOM05D004649 ORTHO05D005446 1.7e-145 520.0 428 61.9
ClCG11G006900 Citrullus lanatus HOM05D004649 ORTHO05D005446 6.5e-145 518.1 460 61.3
Haze_14832 Corylus avellana HOM05D004649 ORTHO05D005446 1.4e-144 516.9 459 61.2
ECA238G0199 Erigeron canadensis HOM05D004649 ORTHO05D005446 4.2e-144 515.4 426 62.2
Duzib147G0539 Durio zibethinus HOM05D004649 ORTHO05D005446 9.3e-144 514.2 426 63.4
Medtr6g023350 Medicago truncatula HOM05D004649 ORTHO05D005446 2.1e-143 513.1 428 61.4
FAN05G5354 Fragaria x ananassa HOM05D004649 ORTHO05D005446 1.3e-142 510.4 465 59.1
HanXRQChr07g0198311 Helianthus annuus HOM05D004649 ORTHO05D005446 1.8e-142 510.0 426 61.7
Sed0002339 Sechium edule HOM05D004649 ORTHO05D005446 5.1e-142 508.4 426 63.6
Nn2g10549 Nelumbo nucifera HOM05D004649 ORTHO05D005446 8.7e-142 507.7 426 64.1
HPP92_017768 Vanilla planifolia HOM05D004649 ORTHO05D005446 5.7e-141 505.0 423 61.2
Cpa.g.sc130.9 Carica papaya HOM05D004649 ORTHO05D005446 7.4e-141 504.6 427 61.6
THA.LOC104821114 Tarenaya hassleriana HOM05D004649 ORTHO05D005446 9.7e-141 504.2 427 61.8
Peaxi162Scf00420g00411 Petunia axillaris HOM05D004649 ORTHO05D005446 1.8e-139 500.0 437 61.8
COL.COLO4_08766 Corchorus olitorius HOM05D004649 ORTHO05D005446 2.0e-138 496.5 423 62.4
Nitab4.5_0002887g0140 Nicotiana tabacum HOM05D004649 ORTHO05D005446 2.6e-138 496.1 425 61.4
Sc07g0004210 Simmondsia chinensis HOM05D004649 ORTHO05D005446 1.0e-137 494.2 380 66.8
Psat1g084880 Pisum sativum HOM05D004649 ORTHO05D005446 6.5e-137 491.5 428 59.3
DCAR_015086 Daucus carota HOM05D004649 ORTHO05D005446 1.1e-136 490.7 422 56.6
Peaxi162Scf00700g00129 Petunia axillaris HOM05D004649 ORTHO05D005446 1.1e-136 490.7 421 62.2
Os08g0119000 Oryza sativa ssp. japonica HOM05D004649 ORTHO05D005446 1.9e-136 490.0 426 60.1
Lj7C608T4 Lonicera japonica HOM05D004649 ORTHO05D005446 1.1e-133 480.7 426 60.8
Hund06757 Selenicereus undatus HOM05D004649 ORTHO05D005446 4.3e-133 478.8 426 60.1
Aa31LG11G15040 Aethionema arabicum HOM05D004649 ORTHO05D005446 2.2e-132 476.5 427 60.0
Thhalv10013615m.g Eutrema salsugineum HOM05D004649 ORTHO05D005446 2.8e-132 476.1 427 59.3
Sp6g29780 Schrenkiella parvula HOM05D004649 ORTHO05D005446 2.8e-132 476.1 427 59.5
BcaC03g13505 Brassica carinata HOM05D004649 ORTHO05D005446 4.8e-132 475.3 428 59.3
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 6.3e-132 474.9 427 59.3
C02p06640 Brassica napus HOM05D004649 ORTHO05D005446 1.4e-131 473.8 428 59.1
Aqoxy3G01472 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 1.8e-131 473.4 426 58.9
Zm00001eb261210 Zea mays HOM05D004649 ORTHO05D005446 2.4e-131 473.0 426 58.2
BraA02t05210Z Brassica rapa HOM05D004649 ORTHO05D005446 9.1e-131 471.1 427 58.5
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 1.2e-130 470.7 426 58.5
Manes.15G158000 Manihot esculenta HOM05D004649 ORTHO05D005446 1.2e-130 470.7 311 75.2
BcaB08g36970 Brassica carinata HOM05D004649 ORTHO05D005446 2.0e-130 469.9 425 59.8
A03p06510 Brassica napus HOM05D004649 ORTHO05D005446 3.4e-130 469.2 426 58.9
BcaNung03172 Brassica carinata HOM05D004649 ORTHO05D005446 1.3e-129 467.2 423 58.9
AT5G14250 Arabidopsis thaliana HOM05D004649 ORTHO05D005446 1.7e-129 466.8 427 59.0
ATR0124G048 Amborella trichopoda HOM05D004649 ORTHO05D005446 2.2e-129 466.5 361 65.7
BraA03t09983Z Brassica rapa HOM05D004649 ORTHO05D005446 2.2e-129 466.5 426 58.5
Gohir.D10G084700 Gossypium hirsutum HOM05D004649 ORTHO05D005446 2.9e-129 466.1 426 58.0
Potri.017G066300 Populus trichocarpa HOM05D004649 ORTHO05D005446 3.8e-129 465.7 323 71.8
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 7.9e-127 458.0 426 58.5
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 7.9e-127 458.0 426 58.5
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 1.8e-126 456.8 426 58.0
Gorai.011G092400 Gossypium raimondii HOM05D004649 ORTHO05D005446 2.3e-126 456.4 426 58.7
CDE02G4363 Ceratophyllum demersum HOM05D004649 ORTHO05D005446 6.7e-126 454.9 445 56.9
Carub.0006s1245 Capsella rubella HOM05D004649 ORTHO05D005446 1.1e-125 454.1 427 57.8
AL6G24930 Arabidopsis lyrata HOM05D004649 ORTHO05D005446 2.6e-125 453.0 383 62.4
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 4.4e-125 452.2 426 57.7
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 1.3e-124 450.7 426 57.7
unitig_52.g17652 Utricularia gibba HOM05D004649 ORTHO05D005446 1.2e-122 444.1 437 58.4
Sed0000018 Sechium edule HOM05D004649 ORTHO05D005446 1.5e-122 443.7 426 57.3
BcaB01g06336 Brassica carinata HOM05D004649 ORTHO05D005446 8.5e-121 438.0 427 54.8
CARHR199090 Cardamine hirsuta HOM05D004649 ORTHO05D005446 1.9e-120 436.8 386 60.6
Mapoly0005s0216 Marchantia polymorpha HOM05D004649 ORTHO05D005446 1.8e-115 420.2 428 52.3
AagrBONN_evm.TU.Sc2ySwM_368.1057 Anthoceros agrestis HOM05D004649 ORTHO05D005446 5.3e-115 418.7 452 51.1
Pp3c11_20060 Physcomitrium patens HOM05D004649 ORTHO05D005446 1.2e-114 417.5 428 51.4
SMO351G0195 Selaginella moellendorffii HOM05D004649 ORTHO05D005446 2.6e-114 416.4 425 52.5
CBR_g75710 Chara braunii HOM05D004649 ORTHO05D005446 7.5e-109 398.3 430 50.9
EL10As11g23981 Beta vulgaris HOM05D004649 ORTHO05D005446 2.2e-105 386.7 387 54.8
Nn3g16527 Nelumbo nucifera HOM05D004649 ORTHO05D005446 4.1e-99 365.9 284 64.4
Hma1.2p1_0571F.1_g180750 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 4.7e-95 352.4 240 72.9
Sabra16G0215300 Salix brachista HOM05D004649 ORTHO05D005446 8.0e-95 351.7 242 72.3
Zm00001eb173540 Zea mays HOM05D004649 ORTHO05D005446 9.5e-88 328.2 324 53.4
BcaB01g05123 Brassica carinata HOM05D004649 ORTHO05D005446 4.0e-86 322.8 408 47.5
C03p07530 Brassica napus HOM05D004649 ORTHO05D005446 2.4e-83 313.5 357 51.0
Actinidia36180 Actinidia chinensis HOM05D004649 ORTHO05D005446 2.0e-77 293.9 427 45.0
Cre16.g671100 Chlamydomonas reinhardtii HOM05D004649 ORTHO05D005446 2.3e-65 253.8 429 35.7
Gohir.A01G185660 Gossypium hirsutum HOM05D004649 ORTHO05D005446 6.2e-63 245.7 211 60.2
PRCOL_00002547 Prasinoderma coloniale HOM05D004649 ORTHO05D005446 1.5e-61 241.1 485 33.6
CAN.G473.64 Capsicum annuum HOM05D004649 ORTHO05D005446 1.2e-55 221.5 176 66.5
C09p61600 Brassica napus HOM05D004649 ORTHO05D005446 1.1e-51 208.4 324 41.7
A03p07400 Brassica napus HOM05D004649 ORTHO05D005446 5.6e-48 196.1 195 56.4
BcaC04g18970 Brassica carinata HOM05D004649 ORTHO05D005446 5.4e-43 179.5 357 37.5
SEGI_26946 Sequoiadendron giganteum HOM05D004649 ORTHO05D005446 2.7e-42 177.2 142 59.9
BraA03t10063Z Brassica rapa HOM05D004649 ORTHO05D005446 1.0e-41 175.3 195 51.3
BolC9t59028H Brassica oleracea HOM05D004649 ORTHO05D005446 2.1e-39 167.5 307 38.4
MCO12G022 Micromonas commoda HOM05D004649 ORTHO05D005446 3.5e-34 150.2 323 31.6
Sabra07G0059200 Salix brachista HOM05D004649 ORTHO05D005446 2.3e-33 147.5 250 40.0
Sabra07G0059100 Salix brachista HOM05D005682 ORTHO05D007050 1.9e-27 127.9 148 49.3
BolC3t13254H Brassica oleracea HOM05D004649 ORTHO05D005446 1.3e-23 115.2 106 61.3
QL12p000006 Quercus lobata HOM05D004649 ORTHO05D005446 1.2e-21 108.6 76 67.1
QL12p000135 Quercus lobata HOM05D004649 ORTHO05D005446 1.2e-21 108.6 76 67.1
FAN09G3197 Fragaria x ananassa HOM05D004649 ORTHO05D005446 3.4e-21 107.1 78 60.3
Duzib268G1750 Durio zibethinus HOM05D004649 ORTHO05D005446 1.9e-19 101.3 125 43.2
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 3.0e-17 94.0 77 62.3
Aqoxy5G03476 Aquilegia oxysepala HOM05D004649 ORTHO05D005446 8.5e-12 75.9 117 42.7
Oeu042415.1 Olea europaea HOM05D004649 ORTHO05D005446 2.5e-11 74.3 48 72.9
FvH4_2g01181 Fragaria vesca HOM05D000564 ORTHO05D005446 9.4e-11 72.4 53 71.7
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 2.2e-07 61.2 62 51.6
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 3.7e-07 60.5 49 59.2
Hma1.2p1_0571F.1_g180740 Hydrangea macrophylla HOM05D004649 ORTHO05D005446 5.3e-06 56.6 64 51.6


User provided reference genes

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