Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G5172 Papaver somniferum HOM05D003836 ORTHO05D004556 0.0e+00 1138.6 594 100.0
PSO063G7099 Papaver somniferum HOM05D003836 ORTHO05D004556 0.0e+00 1100.9 597 97.2
TAR374G0617 Trochodendron aralioides HOM05D003836 ORTHO05D004556 1.3e-223 780.0 633 67.1
TAR622G1236 Trochodendron aralioides HOM05D003836 ORTHO05D004556 1.6e-213 746.5 636 64.8
Nn4g24475 Nelumbo nucifera HOM05D003836 ORTHO05D004556 3.3e-211 738.8 640 65.5
GSVIVG01011621001 Vitis vinifera HOM05D003836 ORTHO05D004556 1.2e-210 736.9 634 65.3
Nn3g18432 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.3e-207 726.9 640 64.7
Aqoxy6G01037 Aquilegia oxysepala HOM05D003836 ORTHO05D004556 7.8e-205 717.6 551 68.6
Ciclev10014689m.g Citrus clementina HOM05D003836 ORTHO05D004556 4.4e-200 701.8 608 63.5
Cfa015051 Carpinus fangiana HOM05D003836 ORTHO05D004556 9.9e-200 700.7 648 61.6
CiPaw.05G187900 Carya illinoinensis HOM05D003836 ORTHO05D004556 2.4e-198 696.0 648 60.2
FvH4_4g33240 Fragaria vesca HOM05D003836 ORTHO05D004556 1.1e-195 687.2 609 61.9
Manes.15G136900 Manihot esculenta HOM05D003836 ORTHO05D004556 2.1e-194 682.9 614 62.1
Glyma.04G189300 Glycine max HOM05D003836 ORTHO05D004556 2.4e-193 679.5 482 70.7
RcHm_v2.0_Chr4g0442391 Rosa chinensis HOM05D003836 ORTHO05D004556 3.1e-193 679.1 613 62.3
Manes.17G086000 Manihot esculenta HOM05D003836 ORTHO05D004556 8.9e-193 677.6 615 62.4
Migut.E00502 Erythranthe guttata HOM05D003836 ORTHO05D004556 1.2e-192 677.2 609 62.6
TWI74G0623 Tripterygium wilfordii HOM05D003836 ORTHO05D004556 2.0e-192 676.4 629 61.7
MD16G1015700 Malus domestica HOM05D003836 ORTHO05D004556 4.4e-192 675.2 628 61.3
Gorai.013G030000 Gossypium raimondii HOM05D003836 ORTHO05D004556 7.6e-192 674.5 616 61.4
Glyma.06G176300 Glycine max HOM05D003836 ORTHO05D004556 1.7e-191 673.3 482 70.5
Lj1g0024673 Lotus japonicus HOM05D003836 ORTHO05D004556 4.2e-190 668.7 618 61.3
CANSAT78G2203 Cannabis sativa HOM05D003836 ORTHO05D004556 7.1e-190 667.9 651 58.1
Phvul.009G172600 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 7.1e-190 667.9 618 59.4
Gorai.008G170400 Gossypium raimondii HOM05D003836 ORTHO05D004556 7.8e-189 664.5 611 60.6
FAN07G2679 Fragaria x ananassa HOM05D003836 ORTHO05D004556 1.0e-188 664.1 610 61.1
FAN22G0514 Fragaria x ananassa HOM05D003836 ORTHO05D004556 1.0e-188 664.1 604 60.4
Prupe.1G335900 Prunus persica HOM05D003836 ORTHO05D004556 1.7e-188 663.3 615 61.3
FAN17G2261 Fragaria x ananassa HOM05D003836 ORTHO05D004556 3.9e-188 662.1 610 60.5
CsaV3_7G022080 Cucumis sativus L. HOM05D003836 ORTHO05D004556 5.6e-187 658.3 649 58.6
Gohir.A13G027900 Gossypium hirsutum HOM05D003836 ORTHO05D004556 9.6e-187 657.5 547 64.5
FAN12G1258 Fragaria x ananassa HOM05D003836 ORTHO05D004556 3.6e-186 655.6 604 59.9
Haze_10840 Corylus avellana HOM05D003836 ORTHO05D004556 4.8e-186 655.2 649 57.5
Ca_16122_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 8.1e-186 654.4 645 57.2
TPR.G35600 Trifolium pratense HOM05D003836 ORTHO05D004556 8.1e-186 654.4 647 58.1
Atru.chr7.2694 Acer truncatum HOM05D003836 ORTHO05D004556 1.1e-185 654.1 440 73.9
QL03p038287 Quercus lobata HOM05D003836 ORTHO05D004556 6.9e-185 651.4 683 55.9
PGR142G3191 Punica granatum HOM05D003836 ORTHO05D004556 9.0e-185 651.0 622 61.3
VMungo1309G0617 Vigna mungo HOM05D003836 ORTHO05D004556 1.5e-184 650.2 616 59.1
Potri.010G103400 Populus trichocarpa HOM05D003836 ORTHO05D004556 2.2e-183 646.4 607 62.1
Sed0017171 Sechium edule HOM05D003836 ORTHO05D004556 3.8e-183 645.6 648 58.0
Dinv32673 Davidia involucrata HOM05D003836 ORTHO05D004556 4.9e-183 645.2 642 58.9
Lalb_Chr11g0070001 Lupinus albus HOM05D003836 ORTHO05D004556 2.7e-181 639.4 634 56.3
ClCG11G007570 Citrullus lanatus HOM05D003836 ORTHO05D004556 3.5e-181 639.0 649 56.5
Medtr3g076570 Medicago truncatula HOM05D003836 ORTHO05D004556 2.3e-180 636.3 612 58.2
Dinv02294 Davidia involucrata HOM05D003836 ORTHO05D004556 6.7e-180 634.8 452 73.0
Hma1.2p1_2859F.1_g329510 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 6.7e-180 634.8 401 78.6
Gohir.D13G026700 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.9e-179 633.3 548 62.8
Eucgr.G02079 Eucalyptus grandis HOM05D003836 ORTHO05D004556 2.4e-177 626.3 524 65.3
CARHR060610 Cardamine hirsuta HOM05D003836 ORTHO05D004556 1.2e-176 624.0 628 55.7
AL2G26960 Arabidopsis lyrata HOM05D003836 ORTHO05D004556 2.6e-176 622.9 632 56.2
Sp5g22940 Schrenkiella parvula HOM05D003836 ORTHO05D004556 2.6e-176 622.9 497 62.8
arahy.Tifrunner.gnm1.ann1.THT645 Arachis hypogaea HOM05D003836 ORTHO05D004556 4.5e-176 622.1 511 64.8
AT1G67960 Arabidopsis thaliana HOM05D003836 ORTHO05D004556 7.6e-176 621.3 630 54.1
Carub.0002s1445 Capsella rubella HOM05D003836 ORTHO05D004556 3.8e-175 619.0 635 55.7
Thecc.02G307000 Theobroma cacao HOM05D003836 ORTHO05D004556 2.4e-174 616.3 618 58.4
Lsat_1_v5_gn_3_104360 Lactuca sativa HOM05D003836 ORTHO05D004556 2.1e-173 613.2 621 57.0
arahy.Tifrunner.gnm1.ann1.HCE13Z Arachis hypogaea HOM05D003836 ORTHO05D004556 2.7e-173 612.8 488 66.2
Atru.chr11.806 Acer truncatum HOM05D003836 ORTHO05D004556 2.3e-172 609.8 396 76.8
arahy.Tifrunner.gnm1.ann1.FHB42U Arachis hypogaea HOM05D003836 ORTHO05D004556 3.9e-172 609.0 457 68.7
Duzib251G0897 Durio zibethinus HOM05D003836 ORTHO05D004556 1.5e-168 597.0 607 58.0
ATR0021G013 Amborella trichopoda HOM05D003836 ORTHO05D004556 2.6e-168 596.3 643 53.0
Thhalv10018303m.g Eutrema salsugineum HOM05D003836 ORTHO05D004556 5.8e-168 595.1 491 61.1
ECA246G1487 Erigeron canadensis HOM05D003836 ORTHO05D004556 2.2e-167 593.2 600 58.8
Psat5g116920 Pisum sativum HOM05D003836 ORTHO05D004556 6.5e-167 591.7 600 57.8
MELO3C013236.2 Cucumis melo HOM05D003836 ORTHO05D004556 1.4e-166 590.5 631 55.9
Sabra10G0076000 Salix brachista HOM05D003836 ORTHO05D004556 1.4e-166 590.5 617 58.7
DCAR_023556 Daucus carota HOM05D003836 ORTHO05D004556 3.2e-166 589.3 618 53.2
A07p34480 Brassica napus HOM05D003836 ORTHO05D004556 2.1e-165 586.6 594 55.7
Cc11_g06410 Coffea canephora HOM05D003836 ORTHO05D004556 2.7e-165 586.3 532 60.0
Duzib268G0198 Durio zibethinus HOM05D003836 ORTHO05D004556 2.5e-163 579.7 616 54.7
Glyma.07G191900 Glycine max HOM05D003836 ORTHO05D004556 3.7e-162 575.9 440 67.0
Zm00001eb216180 Zea mays HOM05D003836 ORTHO05D004556 4.1e-161 572.4 606 52.6
Ah.02g131240 Amaranthus hybridus HOM05D003836 ORTHO05D004556 3.8e-159 565.8 419 69.2
Gohir.A12G154400 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.4e-158 563.9 547 57.2
EL10Ac8g19453 Beta vulgaris HOM05D003836 ORTHO05D004556 5.5e-158 562.0 658 53.2
Gohir.D12G157600 Gossypium hirsutum HOM05D003836 ORTHO05D004556 5.5e-158 562.0 547 58.7
COL.COLO4_27608 Corchorus olitorius HOM05D003836 ORTHO05D004556 1.3e-156 557.4 545 59.6
SalBow2G2298 Salvia bowleyana HOM05D003836 ORTHO05D004556 1.8e-156 557.0 638 52.0
BcaB03g15387 Brassica carinata HOM05D003836 ORTHO05D004556 2.2e-154 550.1 618 50.8
Aa31sc536G20 Aethionema arabicum HOM05D003836 ORTHO05D004556 6.9e-153 545.0 668 48.2
Cpa.g.sc2.157 Carica papaya HOM05D003836 ORTHO05D004556 2.6e-152 543.1 572 56.1
TPR.G32436 Trifolium pratense HOM05D003836 ORTHO05D004556 1.3e-151 540.8 424 62.7
Glyma.13G184600 Glycine max HOM05D003836 ORTHO05D004556 4.6e-149 532.3 468 60.5
SGA_v2.0_scaffold23G10153 Striga asiatica HOM05D003836 ORTHO05D004556 1.5e-147 527.3 593 53.6
VMungo0251G2034 Vigna mungo HOM05D003836 ORTHO05D004556 4.2e-142 509.2 550 53.3
unitig_8.g4015 Utricularia gibba HOM05D003836 ORTHO05D004556 2.7e-141 506.5 618 50.5
Psat7g111040 Pisum sativum HOM05D003836 ORTHO05D004556 6.1e-141 505.4 364 68.4
BcaC08g46221 Brassica carinata HOM05D003836 ORTHO05D004556 2.0e-136 490.3 633 46.0
arahy.Tifrunner.gnm1.ann1.36Q8NS Arachis hypogaea HOM05D003836 ORTHO05D004556 7.7e-136 488.4 628 48.6
BolC6t39223H Brassica oleracea HOM05D003836 ORTHO05D004556 2.2e-135 486.9 587 48.0
Lj6A734G74 Lonicera japonica HOM05D003836 ORTHO05D004556 8.0e-133 478.4 446 58.3
Phvul.002G223900 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 8.0e-133 478.4 490 55.1
Pp3c12_1050 Physcomitrium patens HOM05D003836 ORTHO05D004556 1.7e-130 470.7 436 55.5
Os03g0715400 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 6.3e-130 468.8 355 67.0
arahy.Tifrunner.gnm1.ann1.6NWB5V Arachis hypogaea HOM05D003836 ORTHO05D004556 4.2e-126 456.1 468 53.4
Mapoly0019s0007 Marchantia polymorpha HOM05D003836 ORTHO05D004556 1.2e-123 448.0 507 46.7
Medtr4g090465 Medicago truncatula HOM05D003836 ORTHO05D004556 2.8e-122 443.4 430 55.6
Solyc06g051440.4 Solanum lycopersicum HOM05D003836 ORTHO05D004556 1.7e-119 434.1 290 75.5
BcaB03g15147 Brassica carinata HOM05D003836 ORTHO05D004556 5.4e-113 412.5 574 43.4
SHI04351 Sapria himalayana HOM05D003836 ORTHO05D004556 2.3e-108 397.1 354 61.0
Nitab4.5_0001516g0010 Nicotiana tabacum HOM05D003836 ORTHO05D004556 3.0e-108 396.7 750 39.5
C06p42030 Brassica napus HOM05D003836 ORTHO05D004556 5.2e-108 396.0 593 41.8
Oeu036124.4 Olea europaea HOM05D003836 ORTHO05D004556 5.6e-102 375.9 297 69.7
arahy.Tifrunner.gnm1.ann1.0AB4R7 Arachis hypogaea HOM05D003836 ORTHO05D004556 6.2e-101 372.5 468 48.9
Lalb_Chr23g0273371 Lupinus albus HOM05D003836 ORTHO05D004556 2.3e-100 370.5 465 48.6
AUR62033051 Chenopodium quinoa HOM05D003836 ORTHO05D004556 9.2e-97 358.6 548 46.4
AagrBONN_evm.TU.Sc2ySwM_228.1822 Anthoceros agrestis HOM05D003836 ORTHO05D004556 2.2e-90 337.4 339 52.5
MD13G1017500 Malus domestica HOM05D003836 ORTHO05D004556 6.6e-87 325.9 423 49.6
SMO358G0292 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 2.5e-86 323.9 443 43.6
Sc10g0004880 Simmondsia chinensis HOM05D003836 ORTHO05D004556 1.2e-83 315.1 197 78.2
MBI11_g36366_MAGBIO Magnolia biondii HOM05D003836 ORTHO05D004556 4.7e-77 293.1 276 55.8
Sopen06g017410 Solanum pennellii HOM05D003836 ORTHO05D004556 3.4e-75 287.0 403 48.4
Peaxi162Scf00825g00424 Petunia axillaris HOM05D003836 ORTHO05D004556 1.7e-74 284.6 393 47.3
Nitab4.5_0001227g0030 Nicotiana tabacum HOM05D003836 ORTHO05D004556 9.3e-73 278.9 621 36.2
HanXRQChr15g0473551 Helianthus annuus HOM05D003836 ORTHO05D004556 1.2e-72 278.5 205 67.8
Sc10g0004870 Simmondsia chinensis HOM05D003836 ORTHO05D004556 3.5e-72 276.9 217 67.3
Lalb_Chr23g0273381 Lupinus albus HOM05D003836 ORTHO05D004556 1.3e-71 275.0 171 76.0
CSS0006660 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 1.7e-71 274.6 166 80.1
AUR62042201 Chenopodium quinoa HOM05D003836 ORTHO05D004556 2.4e-65 254.2 557 37.9
HanXRQChr15g0473541 Helianthus annuus HOM05D003836 ORTHO05D004556 1.2e-64 251.9 166 72.9
DCAR_030293 Daucus carota HOM05D003836 ORTHO05D004556 2.3e-63 247.7 347 41.8
Peaxi162Scf00825g00423 Petunia axillaris HOM05D003836 ORTHO05D004556 3.0e-63 247.3 164 73.8
BcaC08g46015 Brassica carinata HOM05D003836 ORTHO05D004556 8.7e-63 245.7 188 68.1
Hma1.2p1_1450F.1_g284160 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 7.6e-59 232.6 316 47.2
C01p04020 Brassica napus HOM05D003836 ORTHO05D004556 3.8e-58 230.3 176 61.4
MD13G1017700 Malus domestica HOM05D003836 ORTHO05D004556 8.2e-53 212.6 124 79.0
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 3.7e-45 187.2 126 73.0
MCO03G489 Micromonas commoda HOM05D003836 ORTHO05D004556 2.0e-43 181.4 382 32.5
Hma1.2p1_0658F.1_g197210 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 2.6e-43 181.0 304 44.7
Nn8g39028 Nelumbo nucifera HOM05D003836 ORTHO05D004556 8.5e-42 176.0 142 66.9
PRCOL_00001721 Prasinoderma coloniale HOM05D003836 ORTHO05D004556 1.2e-40 172.2 439 31.0
Ca_18504_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 3.6e-40 170.6 183 56.3
arahy.Tifrunner.gnm1.ann1.I9RBIQ Arachis hypogaea HOM05D003836 ORTHO05D004556 1.3e-37 162.2 183 53.6
Nn6g35439 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.3e-37 162.2 145 63.4
Nn6g35150 Nelumbo nucifera HOM05D003836 ORTHO05D004556 3.1e-36 157.5 120 70.0
Gohir.D13G133800 Gossypium hirsutum HOM05D003836 ORTHO05D004556 2.6e-35 154.5 126 63.5
C06p38100 Brassica napus HOM05D003836 ORTHO05D004556 2.7e-32 144.4 239 37.7
BolC6t38907H Brassica oleracea HOM05D003836 ORTHO05D004556 2.7e-32 144.4 239 37.7
HPP92_020596 Vanilla planifolia HOM05D003836 ORTHO05D004556 1.0e-31 142.5 280 38.6
Cre02.g091000 Chlamydomonas reinhardtii HOM05D003836 ORTHO05D004556 6.3e-29 133.3 498 23.7
CAN.G2032.2 Capsicum annuum HOM05D003836 ORTHO05D004556 1.4e-28 132.1 134 53.0
Hund15725 Selenicereus undatus HOM05D003836 ORTHO05D004556 7.7e-27 126.3 244 37.7
arahy.Tifrunner.gnm1.ann1.MA62LX Arachis hypogaea HOM05D003836 ORTHO05D004556 1.3e-26 125.6 88 71.6
Cpa.g.sc2.159 Carica papaya HOM05D003836 ORTHO05D004556 3.6e-24 117.5 69 78.3
RcHm_v2.0_Chr2g0114371 Rosa chinensis HOM05D003836 ORTHO05D004556 9.7e-22 109.4 90 71.1
arahy.Tifrunner.gnm1.ann1.ANFG2H Arachis hypogaea HOM05D003836 ORTHO05D004556 2.2e-21 108.2 92 60.9
Cfa025144 Carpinus fangiana HOM05D003836 ORTHO05D004556 2.2e-21 108.2 266 33.8
TPR.G24606 Trifolium pratense HOM05D003836 ORTHO05D004556 8.2e-21 106.3 69 66.7
Oeu043972.2 Olea europaea HOM05D003836 ORTHO05D004556 7.0e-20 103.2 176 39.8
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 7.2e-17 93.2 82 63.4
arahy.Tifrunner.gnm1.ann1.2AK3X2 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.0e-15 89.4 96 51.0
arahy.Tifrunner.gnm1.ann1.62N7D7 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.0e-15 89.4 96 51.0
arahy.Tifrunner.gnm1.ann1.6IM5NS Arachis hypogaea HOM05D003836 ORTHO05D004556 1.0e-15 89.4 96 51.0
arahy.Tifrunner.gnm1.ann1.QY8RSF Arachis hypogaea HOM05D003836 ORTHO05D004556 1.0e-15 89.4 96 51.0
SEGI_35804 Sequoiadendron giganteum HOM05D003836 ORTHO05D004556 1.4e-15 89.0 154 37.7
arahy.Tifrunner.gnm1.ann1.1LH17Q Arachis hypogaea HOM05D003836 ORTHO05D004556 1.8e-15 88.6 88 55.7
SMO278G0031 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 6.7e-15 86.7 147 40.1
arahy.Tifrunner.gnm1.ann1.XXVP91 Arachis hypogaea HOM05D003836 ORTHO05D004556 2.0e-14 85.1 88 52.3
Gorai.010G152700 Gossypium raimondii HOM05D003836 ORTHO05D004556 2.8e-13 81.3 54 74.1
Nn6g35438 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.4e-12 79.0 52 78.8
SHI04354 Sapria himalayana HOM05D003836 ORTHO05D004556 7.0e-12 76.6 61 60.7
SMO200G0209 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 7.0e-12 76.6 81 51.9
CSS0003774 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 7.7e-11 73.2 207 36.2
Ca_18505_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 2.2e-10 71.6 76 50.0
arahy.Tifrunner.gnm1.ann1.UYUS3H Arachis hypogaea HOM05D003836 ORTHO05D019773 2.5e-09 68.2 53 64.2
Zm00001eb237940 Zea mays HOM05D003836 ORTHO05D004556 4.2e-09 67.4 46 56.5
Zm00001eb410650 Zea mays HOM05D003836 ORTHO05D004556 4.2e-09 67.4 46 56.5
Zm00001eb175210 Zea mays HOM05D003836 ORTHO05D004556 1.2e-08 65.9 46 54.3
arahy.Tifrunner.gnm1.ann1.45U5GW Arachis hypogaea HOM05D003836 ORTHO05D011406 2.1e-08 65.1 52 63.5
arahy.Tifrunner.gnm1.ann1.70DEUR Arachis hypogaea HOM05D000602 ORTHO05D004556 2.7e-08 64.7 36 75.0
RcHm_v2.0_Chr4g0390701 Rosa chinensis HOM05D003836 ORTHO05D004556 8.0e-08 63.2 44 65.9
RcHm_v2.0_Chr6g0287871 Rosa chinensis HOM05D003836 ORTHO05D004556 3.0e-07 61.2 37 83.8
arahy.Tifrunner.gnm1.ann1.JZ224H Arachis hypogaea HOM05D022818 ORTHO05D000304 2.0e-06 58.5 56 60.7
arahy.Tifrunner.gnm1.ann1.X5KGN6 Arachis hypogaea HOM05D003836 ORTHO05D004556 2.0e-06 58.5 135 40.7
Os03g0715332 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 2.6e-06 58.2 53 52.8


User provided reference genes

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