Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 3.2e-199 698.7 512 100.0
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 1.4e-186 656.8 513 96.1
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 5.0e-184 648.3 514 94.6
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 6.9e-109 398.7 513 60.4
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 2.0e-108 397.1 522 54.8
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 1.4e-106 391.0 520 49.2
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 7.2e-106 388.7 549 58.5
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 2.3e-104 383.6 517 54.0
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 3.3e-103 379.8 528 53.6
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 4.3e-103 379.4 531 54.4
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 2.8e-102 376.7 541 62.7
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 2.8e-102 376.7 523 51.2
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 1.8e-101 374.0 513 57.9
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 2.6e-100 370.2 576 53.1
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 3.4e-100 369.8 548 48.5
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 7.7e-100 368.6 574 49.8
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 1.0e-99 368.2 530 48.3
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 7.2e-98 362.1 550 53.3
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 1.0e-96 358.2 551 56.3
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 1.4e-96 357.8 565 43.2
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 1.4e-96 357.8 575 59.3
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 3.9e-96 356.3 650 53.1
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 3.9e-96 356.3 532 46.4
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 6.7e-96 355.5 544 59.7
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 1.1e-95 354.8 517 42.9
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 5.7e-95 352.4 605 49.8
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 7.4e-95 352.1 544 56.6
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 9.7e-95 351.7 557 58.3
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 1.7e-94 350.9 561 41.9
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 2.8e-94 350.1 541 46.6
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 4.8e-94 349.4 491 47.3
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 2.4e-93 347.1 479 58.7
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 1.2e-92 344.7 560 42.1
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 1.2e-92 344.7 516 63.4
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 2.0e-92 344.0 518 51.9
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 2.6e-92 343.6 514 52.1
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 1.0e-91 341.7 594 54.7
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 3.8e-91 339.7 538 59.3
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 5.0e-91 339.3 594 55.7
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 6.5e-91 339.0 608 38.7
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 2.5e-90 337.0 543 56.0
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 1.2e-89 334.7 519 55.9
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 1.2e-89 334.7 561 44.4
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 2.1e-89 334.0 541 49.4
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 6.1e-89 332.4 538 47.8
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 6.1e-89 332.4 514 48.8
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 2.3e-88 330.5 534 52.4
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 5.2e-88 329.3 546 53.1
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 1.5e-87 327.8 519 54.3
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 1.5e-87 327.8 497 49.9
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 5.7e-87 325.9 516 44.8
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 5.7e-87 325.9 595 53.8
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 9.7e-87 325.1 593 57.2
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 1.3e-86 324.7 517 60.0
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.3e-86 324.7 517 60.0
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.3e-86 324.7 519 59.3
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 1.7e-86 324.3 563 55.4
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 1.7e-86 324.3 553 57.1
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 2.2e-86 323.9 541 47.9
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 4.8e-86 322.8 518 61.4
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 6.3e-86 322.4 564 49.3
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 6.3e-86 322.4 540 53.1
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 1.8e-85 320.9 559 54.6
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 4.1e-85 319.7 547 54.1
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 1.6e-84 317.8 553 57.1
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 2.6e-84 317.0 529 60.3
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 5.9e-84 315.8 581 47.2
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 1.7e-83 314.3 213 70.4
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 1.7e-83 314.3 534 58.4
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 1.7e-83 314.3 512 48.6
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 2.9e-83 313.5 601 53.1
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 5.0e-83 312.8 559 55.5
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 5.0e-83 312.8 515 54.4
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 8.5e-83 312.0 559 55.5
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 9.4e-82 308.5 559 55.3
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 6.1e-81 305.8 561 55.8
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 6.1e-81 305.8 559 54.4
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 1.2e-79 301.6 566 53.5
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 4.4e-79 299.7 511 58.1
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 9.7e-79 298.5 565 49.0
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 2.8e-78 297.0 531 44.4
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 8.2e-78 295.4 595 43.2
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 2.7e-76 290.4 216 67.1
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 1.0e-75 288.5 257 59.1
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 2.9e-75 287.0 573 50.6
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 2.9e-75 287.0 574 44.9
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 1.9e-74 284.3 629 50.1
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 1.9e-74 284.3 544 44.7
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 5.5e-74 282.7 522 38.7
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 2.0e-71 274.2 478 55.0
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 8.3e-70 268.9 267 55.4
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 9.1e-69 265.4 246 57.3
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 8.6e-67 258.8 212 61.8
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 1.1e-66 258.5 499 36.9
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 1.3e-62 245.0 255 54.5
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 1.7e-62 244.6 149 77.2
TPR.G23111 Trifolium pratense HOM05D004380 ORTHO05D005134 2.2e-62 244.2 148 74.3
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 6.3e-62 242.7 540 53.7
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 1.4e-61 241.5 216 58.3
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 5.4e-61 239.6 495 57.4
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 1.0e-59 235.3 575 52.0
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 1.7e-59 234.6 574 47.7
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 2.3e-59 234.2 256 51.2
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 1.1e-58 231.9 188 61.7
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 2.8e-57 227.3 152 70.4
Cpa.g.sc69.32 Carica papaya HOM05D004380 ORTHO05D005134 2.8e-57 227.3 148 70.9
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 8.0e-57 225.7 177 65.0
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.4e-56 224.9 167 66.5
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 1.8e-56 224.6 215 53.5
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.5e-55 221.5 165 66.1
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 1.3e-54 218.4 235 51.5
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 2.4e-53 214.2 179 60.9
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 1.6e-52 211.5 214 51.9
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 3.9e-51 206.8 158 63.9
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 1.6e-49 201.4 222 48.2
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 2.8e-49 200.7 472 37.5
DCAR_007574 Daucus carota HOM05D004380 ORTHO05D005134 1.8e-48 198.0 149 61.1
TPR.G20578 Trifolium pratense HOM05D004380 ORTHO05D005134 4.4e-47 193.4 113 75.2
arahy.Tifrunner.gnm1.ann1.MH0ZUI Arachis hypogaea HOM05D004380 ORTHO05D005134 1.2e-44 185.3 166 56.6
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 1.3e-38 165.2 158 55.7
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 2.2e-38 164.5 495 47.1
Cre01.g003487 Chlamydomonas reinhardtii HOM05D004380 ORTHO05D005134 6.0e-36 156.4 198 46.0
CSS0001415 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 5.1e-35 153.3 84 76.2
CSS0037993 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 5.1e-35 153.3 84 76.2
Oeu037610.2 Olea europaea HOM05D004380 ORTHO05D005134 2.5e-34 151.0 421 42.3
CSS0014122 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 9.5e-34 149.1 141 67.4
CSS0026269 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 9.5e-34 149.1 141 67.4
MCO15G532 Micromonas commoda HOM05D004380 ORTHO05D005134 4.1e-29 133.7 266 34.6
Haze_13061 Corylus avellana HOM05D000001 ORTHO05D010365 1.0e-27 129.0 146 61.0
Hund11272 Selenicereus undatus HOM05D004380 ORTHO05D005134 1.7e-27 128.3 143 61.5
Ca_23634_v3 Cicer arietinum L. HOM05D000346 ORTHO05D000326 1.1e-26 125.6 354 42.7
PRCOL_00005638 Prasinoderma coloniale HOM05D004380 ORTHO05D005134 3.6e-25 120.6 201 36.8
Lsat_1_v5_gn_3_2421 Lactuca sativa HOM05D004380 ORTHO05D005134 1.1e-24 119.0 137 61.3
QL12p007207 Quercus lobata HOM05D004380 ORTHO05D005134 1.8e-24 118.2 159 53.5
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 1.2e-23 115.5 453 32.0
Sp5g21510 Schrenkiella parvula HOM05D004380 ORTHO05D005134 1.9e-21 108.2 98 55.1
SHI10270 Sapria himalayana HOM05D004380 ORTHO05D005134 5.4e-21 106.7 134 57.5
Zm00001eb400590 Zea mays HOM05D004380 ORTHO05D005134 1.3e-17 95.5 151 43.7
Dinv40656 Davidia involucrata HOM05D000301 ORTHO05D000303 6.2e-17 93.2 56 71.4
AL3G52660 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 2.4e-16 91.3 66 60.6
CAN.G1186.1 Capsicum annuum HOM05D004380 ORTHO05D005134 2.4e-16 91.3 131 45.0
COL.COLO4_33038 Corchorus olitorius HOM05D004380 ORTHO05D005134 4.0e-16 90.5 97 55.7
TPR.G22617 Trifolium pratense HOM05D004380 ORTHO05D005134 3.2e-13 80.9 80 57.5
HPP92_020129 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.3e-11 75.5 109 42.2
Lj2C247T7 Lonicera japonica HOM05D004380 ORTHO05D005134 3.0e-11 74.3 76 56.6
Cfa026589 Carpinus fangiana HOM05D004380 ORTHO05D005134 5.1e-11 73.6 137 32.8
TPR.G11131 Trifolium pratense HOM05D004380 ORTHO05D005134 7.6e-07 59.7 117 35.9
Medtr8g446970 Medicago truncatula HOM05D004380 ORTHO05D005134 4.9e-06 57.0 66 50.0


User provided reference genes

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