Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 1.4e-224 782.7 423 100.0
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 1.8e-123 446.8 400 60.8
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 1.3e-113 414.1 390 59.0
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 5.3e-107 392.1 389 58.4
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 3.5e-106 389.4 389 55.3
Nitab4.5_0005520g0050 Nicotiana tabacum HOM05D006752 ORTHO05D008597 2.5e-104 383.3 402 55.2
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 6.1e-103 378.6 407 53.8
Nitab4.5_0001164g0060 Nicotiana tabacum HOM05D006752 ORTHO05D008597 8.8e-102 374.8 401 53.6
Prupe.7G235200 Prunus persica HOM05D006752 ORTHO05D008597 3.7e-100 369.4 404 53.0
CSS0021299 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 8.3e-100 368.2 402 52.5
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 3.1e-99 366.3 410 52.0
CAN.G377.33 Capsicum annuum HOM05D006752 ORTHO05D008597 2.9e-97 359.8 408 52.2
Duzib168G0331 Durio zibethinus HOM05D006752 ORTHO05D008597 1.1e-96 357.8 397 53.1
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 7.2e-96 355.1 376 54.0
PGSC0003DMG400020684 Solanum tuberosum HOM05D006752 ORTHO05D008597 7.2e-96 355.1 412 51.7
MBI01_g13570_MAGBIO Magnolia biondii HOM05D006752 ORTHO05D008597 2.1e-95 353.6 463 47.7
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 2.8e-95 353.2 402 52.0
Sopen12g002660 Solanum pennellii HOM05D006752 ORTHO05D008597 2.8e-95 353.2 412 51.9
Solyc12g006710.3 Solanum lycopersicum HOM05D006752 ORTHO05D008597 3.6e-95 352.8 412 51.2
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 8.0e-95 351.7 402 52.0
Thecc.09G116900 Theobroma cacao HOM05D006752 ORTHO05D008597 1.4e-94 350.9 410 52.2
MD02G1061400 Malus domestica HOM05D006752 ORTHO05D008597 5.7e-93 345.5 402 50.5
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 7.5e-93 345.1 400 50.2
Gohir.A06G059800 Gossypium hirsutum HOM05D006752 ORTHO05D008597 1.3e-92 344.4 403 51.4
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 1.7e-92 344.0 400 50.5
Sc08g0007050 Simmondsia chinensis HOM05D006752 ORTHO05D008597 1.7e-92 344.0 401 49.1
Gorai.010G068100 Gossypium raimondii HOM05D006752 ORTHO05D008597 2.2e-92 343.6 400 51.0
Gohir.D06G058000 Gossypium hirsutum HOM05D006752 ORTHO05D008597 4.9e-92 342.4 400 51.0
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 2.4e-91 340.1 376 52.7
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 3.8e-89 332.8 405 49.1
CANSAT56G2958 Cannabis sativa HOM05D006752 ORTHO05D008597 6.6e-89 332.0 395 50.1
RcHm_v2.0_Chr2g0089761 Rosa chinensis HOM05D006752 ORTHO05D008597 8.6e-89 331.6 402 49.5
HanXRQChr10g0317451 Helianthus annuus HOM05D006752 ORTHO05D008597 2.5e-88 330.1 393 48.3
Cc06_g09220 Coffea canephora HOM05D006752 ORTHO05D008597 7.3e-88 328.6 404 47.5
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 2.1e-87 327.0 369 52.0
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 3.6e-87 326.2 458 45.2
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 4.0e-86 322.8 416 46.6
DCAR_010437 Daucus carota HOM05D006752 ORTHO05D008597 4.0e-86 322.8 406 48.0
Ah.14g081300 Amaranthus hybridus HOM05D006752 ORTHO05D008597 2.6e-85 320.1 397 46.1
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 2.6e-85 320.1 432 47.0
Rhsim01G0090500 Rhododendron simsii HOM05D006752 ORTHO05D008597 9.8e-85 318.2 401 48.9
arahy.Tifrunner.gnm1.ann1.CJP391 Arachis hypogaea HOM05D006752 ORTHO05D008597 1.3e-84 317.8 422 47.2
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 1.3e-84 317.8 408 50.2
Peaxi162Scf00984g00260 Petunia axillaris HOM05D006752 ORTHO05D008597 2.2e-84 317.0 402 50.5
arahy.Tifrunner.gnm1.ann1.TG1F9L Arachis hypogaea HOM05D006752 ORTHO05D008597 6.4e-84 315.5 438 46.1
Haze_25667 Corylus avellana HOM05D006752 ORTHO05D008597 6.4e-84 315.5 369 50.7
EL10Ac8g18558 Beta vulgaris HOM05D006752 ORTHO05D008597 4.1e-83 312.8 405 46.4
SGA_v2.0_scaffold229G43313 Striga asiatica HOM05D006752 ORTHO05D008597 4.6e-82 309.3 408 48.0
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 2.3e-81 307.0 413 46.2
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 1.9e-80 303.9 426 45.5
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 4.3e-80 302.8 392 48.2
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 9.5e-80 301.6 407 45.7
Os01g0178100 Oryza sativa ssp. japonica HOM05D006752 ORTHO05D008597 9.5e-80 301.6 408 46.1
vmacro20678 Vaccinium macrocarpon HOM05D006752 ORTHO05D008597 9.5e-80 301.6 379 49.3
QL02p086379 Quercus lobata HOM05D006752 ORTHO05D008597 1.1e-78 298.1 535 39.1
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 1.1e-78 298.1 406 46.1
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 2.3e-78 297.0 444 43.9
Hund09171 Selenicereus undatus HOM05D006752 ORTHO05D008597 2.3e-78 297.0 371 46.1
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 1.7e-76 290.8 448 43.1
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 3.7e-76 289.7 339 51.3
Potri.018G073100 Populus trichocarpa HOM05D006752 ORTHO05D008597 3.7e-76 289.7 474 40.9
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 6.4e-76 288.9 412 43.9
Sed0015690 Sechium edule HOM05D006752 ORTHO05D008597 6.4e-76 288.9 395 46.3
AUR62033416 Chenopodium quinoa HOM05D006752 ORTHO05D008597 1.1e-75 288.1 399 44.4
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 5.4e-75 285.8 407 43.7
SalBow6G5676 Salvia bowleyana HOM05D006752 ORTHO05D008597 7.0e-75 285.4 409 46.0
Cpa.g.sc23.163 Carica papaya HOM05D006752 ORTHO05D008597 9.2e-75 285.0 422 44.1
Lsat_1_v5_gn_5_99240 Lactuca sativa HOM05D006752 ORTHO05D008597 1.6e-74 284.3 394 45.4
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 2.1e-74 283.9 409 44.3
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 3.5e-74 283.1 428 42.8
ClCG06G010500 Citrullus lanatus HOM05D006752 ORTHO05D008597 6.0e-74 282.3 400 45.8
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 2.3e-73 280.4 405 44.2
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 2.3e-73 280.4 415 43.9
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 2.3e-73 280.4 405 44.2
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 2.3e-73 280.4 415 43.9
Carub.0006s1832 Capsella rubella HOM05D006752 ORTHO05D008597 6.6e-73 278.9 408 43.1
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 1.1e-72 278.1 405 44.0
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 1.1e-72 278.1 406 43.1
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 1.5e-72 277.7 408 44.1
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 3.3e-72 276.6 416 43.5
Psat1g025400 Pisum sativum HOM05D006752 ORTHO05D008597 7.3e-72 275.4 409 43.8
MELO3C025306.2 Cucumis melo HOM05D006752 ORTHO05D008597 9.5e-72 275.0 458 41.9
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 1.6e-71 274.2 408 42.9
Migut.J01179 Erythranthe guttata HOM05D006752 ORTHO05D008597 4.7e-71 272.7 397 45.1
Sabra18G0063600 Salix brachista HOM05D006752 ORTHO05D008597 4.7e-71 272.7 471 39.9
HPP92_008698 Vanilla planifolia HOM05D006752 ORTHO05D008597 3.1e-70 270.0 411 46.0
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 4.0e-70 269.6 317 48.6
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 2.0e-69 267.3 415 41.4
Oeu018257.1 Olea europaea HOM05D006752 ORTHO05D008597 9.9e-69 265.0 351 47.0
MSTRG.19609 Avicennia marina HOM05D006752 ORTHO05D008597 2.9e-68 263.5 414 44.2
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 1.7e-65 254.2 404 41.8
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 4.2e-59 233.0 380 43.2
SEGI_05783 Sequoiadendron giganteum HOM05D006752 ORTHO05D008597 4.9e-52 209.5 491 34.8
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 6.6e-49 199.1 187 57.2
CsaV3_1G030960 Cucumis sativus L. HOM05D006752 ORTHO05D008597 1.1e-48 198.4 261 48.7
Ca_05468_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 4.3e-48 196.4 203 51.7
Sc08g0007030 Simmondsia chinensis HOM05D006752 ORTHO05D008597 1.4e-43 181.4 187 48.1
Zm00001eb336920 Zea mays HOM05D006752 ORTHO05D008597 2.7e-34 150.6 244 45.9
Pp3c9_1660 Physcomitrium patens HOM05D006752 ORTHO05D008597 1.1e-30 138.7 460 31.1
Pp3c9_1669 Physcomitrium patens HOM05D006752 ORTHO05D008597 1.1e-30 138.7 460 31.1
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 9.0e-30 135.6 508 29.3
Sc08g0007040 Simmondsia chinensis HOM05D006752 ORTHO05D008597 2.0e-29 134.4 140 55.7
CSS0016306 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 2.9e-28 130.6 126 57.9
Cc08_g07650 Coffea canephora HOM05D006752 ORTHO05D008597 2.5e-27 127.5 120 55.8
MD00G1026200 Malus domestica HOM05D006752 ORTHO05D008597 7.9e-26 122.5 96 61.5
Ca_30697_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 2.5e-24 117.5 125 56.0
CSS0032277 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 1.6e-23 114.8 169 43.8
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 1.8e-22 111.3 581 25.0
MD02G1041600 Malus domestica HOM05D006752 ORTHO05D008597 1.8e-22 111.3 84 59.5
MD02G1038900 Malus domestica HOM05D006752 ORTHO05D008597 3.2e-19 100.5 110 52.7
MD00G1027300 Malus domestica HOM05D006752 ORTHO05D008597 4.2e-19 100.1 68 67.6
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 6.3e-15 86.3 390 26.4
MCO09G826 Micromonas commoda HOM05D006752 ORTHO05D008597 1.4e-11 75.1 200 32.0
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 6.1e-10 69.7 182 31.3
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 1.4e-09 68.6 123 38.2
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 5.1e-09 66.6 120 38.3
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 6.7e-09 66.2 173 32.4
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 8.8e-09 65.9 120 35.0
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 8.8e-09 65.9 164 31.7
MD02G1040500 Malus domestica HOM05D006752 ORTHO05D008597 2.0e-08 64.7 92 45.7
MD02G1041500 Malus domestica HOM05D006752 ORTHO05D008597 2.0e-08 64.7 69 46.4
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 2.0e-08 64.7 123 34.1
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 2.0e-08 64.7 158 31.6
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 4.4e-08 63.5 121 36.4
TWI32G0100 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 4.4e-08 63.5 111 36.9
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 5.7e-08 63.2 168 31.0
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 5.7e-08 63.2 121 36.4
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 7.4e-08 62.8 123 35.0
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 7.4e-08 62.8 123 32.5
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 1.3e-07 62.0 123 35.0
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 1.3e-07 62.0 125 34.4
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 2.2e-07 61.2 123 33.3
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 2.2e-07 61.2 166 30.1
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 2.8e-07 60.8 125 36.0
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 2.8e-07 60.8 131 35.1
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 3.7e-07 60.5 129 34.1
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 3.7e-07 60.5 125 33.6
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 3.7e-07 60.5 169 30.2
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 4.8e-07 60.1 158 31.0
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 4.8e-07 60.1 125 35.2
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 4.8e-07 60.1 125 35.2
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 4.8e-07 60.1 125 35.2
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 4.8e-07 60.1 166 30.1
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 4.8e-07 60.1 123 33.3
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 4.8e-07 60.1 221 26.2
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 6.3e-07 59.7 125 32.0
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 6.3e-07 59.7 125 32.8
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 6.3e-07 59.7 127 33.1
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 6.3e-07 59.7 123 33.3
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 8.2e-07 59.3 128 32.8
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 8.2e-07 59.3 128 32.8
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 8.2e-07 59.3 128 32.8
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 8.2e-07 59.3 128 32.8
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 8.2e-07 59.3 117 35.0
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 8.2e-07 59.3 127 34.6
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 8.2e-07 59.3 120 35.8
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 8.2e-07 59.3 123 34.1
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 8.2e-07 59.3 130 35.4
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 1.1e-06 58.9 158 29.7
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 1.1e-06 58.9 126 34.9
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 1.1e-06 58.9 123 35.0
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 1.1e-06 58.9 138 34.1
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.1e-06 58.9 129 34.9
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.4e-06 58.5 123 32.5
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.4e-06 58.5 164 29.3
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 1.8e-06 58.2 119 32.8
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 1.8e-06 58.2 167 28.7
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 1.8e-06 58.2 164 29.3
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 1.8e-06 58.2 123 32.5
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 2.4e-06 57.8 127 29.9
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 2.4e-06 57.8 125 32.8
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 2.4e-06 57.8 86 41.9
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 3.1e-06 57.4 121 33.9
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 3.1e-06 57.4 125 32.8
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 3.1e-06 57.4 158 29.1
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 4.1e-06 57.0 123 33.3
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 4.1e-06 57.0 125 32.0
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 4.1e-06 57.0 127 30.7
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 4.1e-06 57.0 123 32.5
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 5.3e-06 56.6 123 33.3
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 5.3e-06 56.6 158 29.1
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 5.3e-06 56.6 123 34.1
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 7.0e-06 56.2 232 26.3
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 7.0e-06 56.2 125 31.2
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 7.0e-06 56.2 123 33.3
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 9.1e-06 55.8 161 29.8


User provided reference genes

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