Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G3432 Papaver somniferum HOM05D003539 ORTHO05D004111 1.0e-196 689.9 347 100.0
PSO170G6051 Papaver somniferum HOM05D003539 ORTHO05D004111 3.9e-63 246.1 315 49.2
PSO017G0405 Papaver somniferum HOM05D003539 ORTHO05D004111 1.5e-62 244.2 315 47.9
MBI04_g31205_MAGBIO Magnolia biondii HOM05D003539 ORTHO05D004111 1.1e-60 238.0 300 45.0
TAR381G1444 Trochodendron aralioides HOM05D003539 ORTHO05D004111 4.4e-59 232.6 301 42.2
Nn5g28137 Nelumbo nucifera HOM05D003539 ORTHO05D004111 1.3e-58 231.1 307 41.7
Dinv40214 Davidia involucrata HOM05D003539 ORTHO05D004111 6.0e-56 222.2 307 41.0
CSS0035723 Camellia sinensis var. sinensis HOM05D003539 ORTHO05D004111 2.3e-55 220.3 306 41.8
Haze_03640 Corylus avellana HOM05D003539 ORTHO05D004111 5.1e-55 219.2 308 42.5
QL06p053198 Quercus lobata HOM05D003539 ORTHO05D004111 6.6e-55 218.8 295 43.1
Sc06g0005250 Simmondsia chinensis HOM05D003539 ORTHO05D004111 1.9e-54 217.2 307 41.0
Dinv28297 Davidia involucrata HOM05D003539 ORTHO05D004111 4.3e-54 216.1 309 40.8
Oeu063413.2 Olea europaea HOM05D003539 ORTHO05D004111 5.6e-54 215.7 314 40.4
GSVIVG01026448001 Vitis vinifera HOM05D003539 ORTHO05D004111 3.6e-53 213.0 302 40.1
Cfa007110 Carpinus fangiana HOM05D003539 ORTHO05D004111 4.8e-53 212.6 308 41.6
Actinidia02872 Actinidia chinensis HOM05D003539 ORTHO05D004111 6.2e-53 212.2 312 38.1
CiPaw.15G173100 Carya illinoinensis HOM05D003539 ORTHO05D004111 8.1e-53 211.8 295 42.4
MSTRG.20424 Avicennia marina HOM05D003539 ORTHO05D004111 6.9e-52 208.8 308 40.6
Cc07_g12170 Coffea canephora HOM05D003539 ORTHO05D004111 6.9e-52 208.8 295 42.7
Eucgr.J02557 Eucalyptus grandis HOM05D003539 ORTHO05D004111 9.0e-52 208.4 308 38.6
Gohir.D03G066500 Gossypium hirsutum HOM05D003539 ORTHO05D004111 2.0e-51 207.2 294 40.5
Oeu010807.1 Olea europaea HOM05D003539 ORTHO05D004111 3.4e-51 206.5 306 39.9
Gorai.003G064600 Gossypium raimondii HOM05D003539 ORTHO05D004111 4.5e-51 206.1 294 40.1
Duzib147G0916 Durio zibethinus HOM05D003539 ORTHO05D004111 9.9e-51 204.9 294 40.5
Haze_00123 Corylus avellana HOM05D003539 ORTHO05D004111 1.3e-50 204.5 297 41.1
Glyma.09G196200 Glycine max HOM05D003539 ORTHO05D004111 1.7e-50 204.1 321 39.9
Glyma.16G112800 Glycine max HOM05D003539 ORTHO05D004111 4.9e-50 202.6 321 39.9
Hma1.2p1_0085F.1_g044410 Hydrangea macrophylla HOM05D003539 ORTHO05D004111 4.9e-50 202.6 310 39.7
Peaxi162Scf00677g00114 Petunia axillaris HOM05D003539 ORTHO05D004111 4.9e-50 202.6 309 38.8
vmacro18474 Vaccinium macrocarpon HOM05D003539 ORTHO05D004111 4.9e-50 202.6 305 40.0
PGR044G1248 Punica granatum HOM05D003539 ORTHO05D004111 5.4e-49 199.1 307 39.1
Thecc.01G002200 Theobroma cacao HOM05D003539 ORTHO05D004111 7.1e-49 198.7 294 39.1
SalBow7G2073 Salvia bowleyana HOM05D003539 ORTHO05D004111 2.1e-48 197.2 308 38.6
TWI79G1391 Tripterygium wilfordii HOM05D003539 ORTHO05D004111 2.7e-48 196.8 314 36.3
Lj2C504G7 Lonicera japonica HOM05D003539 ORTHO05D004111 3.5e-48 196.4 310 38.1
Rhsim08G0026200 Rhododendron simsii HOM05D003539 ORTHO05D004111 4.6e-48 196.1 325 38.2
Nitab4.5_0000588g0180 Nicotiana tabacum HOM05D003539 ORTHO05D004111 1.3e-47 194.5 307 38.4
CAN.G1428.5 Capsicum annuum HOM05D003539 ORTHO05D004111 1.8e-47 194.1 309 37.9
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 2.3e-47 193.7 306 39.2
Lalb_Chr09g0334501 Lupinus albus HOM05D003539 ORTHO05D004111 5.1e-47 192.6 323 39.0
SGA_v2.0_scaffold36G14401 Striga asiatica HOM05D003539 ORTHO05D004111 6.7e-47 192.2 310 39.0
Nitab4.5_0003096g0020 Nicotiana tabacum HOM05D003539 ORTHO05D004111 8.7e-47 191.8 307 38.1
Nitab4.5_0000855g0080 Nicotiana tabacum HOM05D003539 ORTHO05D004111 1.9e-46 190.7 307 38.1
Lalb_Chr05g0229501 Lupinus albus HOM05D003539 ORTHO05D004111 5.6e-46 189.1 314 39.2
Manes.01G157300 Manihot esculenta HOM05D003539 ORTHO05D004111 5.6e-46 189.1 311 39.9
Phvul.010G020100 Phaseolus vulgaris HOM05D003539 ORTHO05D004111 7.4e-46 188.7 312 37.5
Atru.chr3.55 Acer truncatum HOM05D003539 ORTHO05D004111 1.6e-45 187.6 299 37.5
VMungo1309G1473 Vigna mungo HOM05D003539 ORTHO05D004111 6.2e-45 185.7 312 37.8
TAR376G1176 Trochodendron aralioides HOM05D003539 ORTHO05D004111 1.1e-44 184.9 307 40.4
Migut.A00468 Erythranthe guttata HOM05D003539 ORTHO05D004111 1.4e-44 184.5 314 36.6
Lsat_1_v5_gn_5_30740 Lactuca sativa HOM05D003539 ORTHO05D004111 3.1e-44 183.3 305 36.4
arahy.Tifrunner.gnm1.ann1.PPI4NM Arachis hypogaea HOM05D003539 ORTHO05D004111 4.0e-44 183.0 360 34.7
Sed0013779 Sechium edule HOM05D003539 ORTHO05D004111 6.9e-44 182.2 306 36.9
Solyc02g082340.3 Solanum lycopersicum HOM05D003539 ORTHO05D004111 6.9e-44 182.2 299 38.1
THA.LOC104814350 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 6.9e-44 182.2 297 37.4
EL10Ac4g09711 Beta vulgaris HOM05D003539 ORTHO05D004111 9.0e-44 181.8 316 36.1
ClCG05G001500 Citrullus lanatus HOM05D003539 ORTHO05D004111 9.0e-44 181.8 329 36.2
Sopen02g027000 Solanum pennellii HOM05D003539 ORTHO05D004111 9.0e-44 181.8 299 38.1
ClCG02G000270 Citrullus lanatus HOM05D003539 ORTHO05D004111 1.2e-43 181.4 322 37.0
Sed0003470 Sechium edule HOM05D003539 ORTHO05D004111 1.5e-43 181.0 310 37.7
CANSAT35G0647 Cannabis sativa HOM05D003539 ORTHO05D004111 3.4e-43 179.9 306 36.9
HanXRQChr16g0510861 Helianthus annuus HOM05D003539 ORTHO05D004111 3.4e-43 179.9 298 37.2
COL.COLO4_16224 Corchorus olitorius HOM05D003539 ORTHO05D004111 5.8e-43 179.1 302 36.8
Peaxi162Scf00344g01722 Petunia axillaris HOM05D003539 ORTHO05D004111 1.3e-42 177.9 285 37.5
Manes.11G091200 Manihot esculenta HOM05D003539 ORTHO05D004111 4.9e-42 176.0 307 37.5
SGA_v2.0_scaffold172G38971 Striga asiatica HOM05D003539 ORTHO05D004111 8.4e-42 175.3 359 33.7
Hund21770 Selenicereus undatus HOM05D003539 ORTHO05D004111 7.1e-41 172.2 310 37.1
AUR62006940 Chenopodium quinoa HOM05D003539 ORTHO05D004111 1.6e-40 171.0 295 36.9
Aa31LG10G6570 Aethionema arabicum HOM05D003539 ORTHO05D004111 2.7e-40 170.2 302 34.8
arahy.Tifrunner.gnm1.ann1.4LH58N Arachis hypogaea HOM05D003539 ORTHO05D004111 7.9e-40 168.7 278 39.6
arahy.Tifrunner.gnm1.ann1.VZS2MK Arachis hypogaea HOM05D003539 ORTHO05D004111 1.0e-39 168.3 284 39.4
arahy.Tifrunner.gnm1.ann1.UQ0JCX Arachis hypogaea HOM05D003539 ORTHO05D004111 1.3e-39 167.9 254 40.9
arahy.Tifrunner.gnm1.ann1.JIK3X3 Arachis hypogaea HOM05D003539 ORTHO05D004111 1.8e-39 167.5 399 32.1
Aa31LG6G11830 Aethionema arabicum HOM05D003539 ORTHO05D004111 2.3e-39 167.2 300 36.3
HanXRQChr09g0270331 Helianthus annuus HOM05D003539 ORTHO05D004111 3.0e-39 166.8 299 35.5
Actinidia20763 Actinidia chinensis HOM05D003539 ORTHO05D004111 5.1e-39 166.0 312 35.3
Oeu000297.1 Olea europaea HOM05D003539 ORTHO05D004111 5.1e-39 166.0 258 39.9
Sc09g0001980 Simmondsia chinensis HOM05D003539 ORTHO05D004111 1.5e-38 164.5 180 49.4
Lj4g0013403 Lotus japonicus HOM05D003539 ORTHO05D004111 7.4e-38 162.2 317 36.6
AUR62000583 Chenopodium quinoa HOM05D003539 ORTHO05D004111 2.8e-37 160.2 295 35.6
BcaB06g28796 Brassica carinata HOM05D003539 ORTHO05D004111 3.7e-37 159.8 291 35.1
AL4G30740 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 6.2e-37 159.1 311 33.8
Ca_21575_v3 Cicer arietinum L. HOM05D003539 ORTHO05D004111 6.2e-37 159.1 324 34.0
Medtr4g117680 Medicago truncatula HOM05D003539 ORTHO05D004111 8.2e-37 158.7 332 35.2
Aqoxy6G01535 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 1.1e-36 158.3 333 34.2
CARHR128910 Cardamine hirsuta HOM05D003539 ORTHO05D004111 1.1e-36 158.3 301 33.2
Prupe.7G186400 Prunus persica HOM05D003539 ORTHO05D004111 1.8e-36 157.5 301 36.9
Sp4g17040 Schrenkiella parvula HOM05D003539 ORTHO05D004111 3.1e-36 156.8 302 32.5
A04p26550 Brassica napus HOM05D003539 ORTHO05D004111 4.1e-36 156.4 287 33.8
Ah.06g188300 Amaranthus hybridus HOM05D003539 ORTHO05D004111 1.2e-35 154.8 300 36.0
Aqoxy3G00418 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 1.2e-35 154.8 321 33.6
Carub.0001s2885 Capsella rubella HOM05D003539 ORTHO05D004111 1.2e-35 154.8 294 35.0
Thhalv10016395m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 2.0e-35 154.1 303 33.7
Actinidia28753 Actinidia chinensis HOM05D003539 ORTHO05D004111 4.5e-35 152.9 251 38.6
BraA04t18159Z Brassica rapa HOM05D003539 ORTHO05D004111 5.8e-35 152.5 292 33.9
unitig_699.g19839 Utricularia gibba HOM05D003539 ORTHO05D004111 5.8e-35 152.5 271 34.7
Cfa016374 Carpinus fangiana HOM05D003539 ORTHO05D004111 2.2e-34 150.6 237 39.2
Thhalv10007103m.g Eutrema salsugineum HOM05D003539 ORTHO05D004111 2.2e-34 150.6 303 34.3
AL1G44630 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 3.8e-34 149.8 304 33.6
MELO3C006107.2 Cucumis melo HOM05D003539 ORTHO05D004111 3.8e-34 149.8 178 47.2
Psat7g042440 Pisum sativum HOM05D003539 ORTHO05D004111 3.8e-34 149.8 325 34.5
MD02G1108900 Malus domestica HOM05D003539 ORTHO05D004111 5.0e-34 149.4 312 35.3
Aqoxy3G00897 Aquilegia oxysepala HOM05D003539 ORTHO05D004111 6.5e-34 149.1 284 35.6
Carub.0004s1644 Capsella rubella HOM05D003539 ORTHO05D004111 6.5e-34 149.1 318 31.8
Psat3g044960 Pisum sativum HOM05D003539 ORTHO05D004111 2.5e-33 147.1 321 34.6
Potri.005G098500 Populus trichocarpa HOM05D003539 ORTHO05D004111 3.2e-33 146.7 320 32.8
AT2G34750 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 5.5e-33 146.0 304 31.2
C03p22480 Brassica napus HOM05D003539 ORTHO05D004111 2.1e-32 144.1 293 31.4
Sabra05G0080900 Salix brachista HOM05D003539 ORTHO05D004111 2.7e-32 143.7 302 33.1
A03p19290 Brassica napus HOM05D003539 ORTHO05D004111 3.5e-32 143.3 294 32.0
BraA03t11183Z Brassica rapa HOM05D003539 ORTHO05D004111 3.5e-32 143.3 294 32.0
THA.LOC104798595 Tarenaya hassleriana HOM05D003539 ORTHO05D004111 3.5e-32 143.3 294 32.7
BcaC01g05764 Brassica carinata HOM05D003539 ORTHO05D004111 4.6e-32 142.9 293 31.4
BolC3t14644H Brassica oleracea HOM05D003539 ORTHO05D004111 4.6e-32 142.9 293 31.4
Os06g0688100 Oryza sativa ssp. japonica HOM05D003539 ORTHO05D004111 7.9e-32 142.1 268 34.0
ECA233G1070 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.3e-31 141.4 179 45.8
RcHm_v2.0_Chr2g0096801 Rosa chinensis HOM05D003539 ORTHO05D004111 2.3e-31 140.6 305 34.1
SHI13961 Sapria himalayana HOM05D003539 ORTHO05D004111 2.3e-31 140.6 283 35.3
Peaxi162Scf00015g00939 Petunia axillaris HOM05D003539 ORTHO05D004111 3.9e-31 139.8 310 33.9
Hund28202 Selenicereus undatus HOM05D003539 ORTHO05D004111 8.7e-31 138.7 235 38.7
Hund28214 Selenicereus undatus HOM05D003539 ORTHO05D004111 8.7e-31 138.7 235 38.7
C04p63970 Brassica napus HOM05D003539 ORTHO05D004111 5.7e-30 136.0 289 31.8
TPR.G29658 Trifolium pratense HOM05D003539 ORTHO05D004111 9.7e-30 135.2 328 32.0
Carub.0004s2129 Capsella rubella HOM05D003539 ORTHO05D004111 1.6e-29 134.4 352 31.5
CDE07G0217 Ceratophyllum demersum HOM05D003539 ORTHO05D004111 2.2e-29 134.0 148 49.3
FAN23G2523 Fragaria x ananassa HOM05D003539 ORTHO05D004111 2.2e-29 134.0 305 33.1
FAN28G2151 Fragaria x ananassa HOM05D003539 ORTHO05D004111 2.2e-29 134.0 305 33.1
SEGI_33601 Sequoiadendron giganteum HOM05D003539 ORTHO05D004111 2.8e-29 133.7 314 31.8
FAN23G0637 Fragaria x ananassa HOM05D003539 ORTHO05D004111 8.2e-29 132.1 305 32.8
BraA05t20035Z Brassica rapa HOM05D003539 ORTHO05D004111 1.4e-28 131.3 290 33.1
FvH4_1g10010 Fragaria vesca HOM05D003539 ORTHO05D004111 1.8e-28 131.0 305 32.5
FAN19G1026 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.8e-28 131.0 305 32.5
ATR0605G358 Amborella trichopoda HOM05D003539 ORTHO05D004111 6.9e-28 129.0 172 43.0
FAN26G1725 Fragaria x ananassa HOM05D003539 ORTHO05D004111 1.2e-27 128.3 305 32.1
C04p14010 Brassica napus HOM05D003539 ORTHO05D004111 5.9e-27 125.9 300 32.3
AL4G35010 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 7.7e-27 125.6 297 33.3
BolC4t22991H Brassica oleracea HOM05D003539 ORTHO05D004111 1.7e-26 124.4 300 31.7
HPP92_018392 Vanilla planifolia HOM05D003539 ORTHO05D004111 3.8e-26 123.2 290 30.3
BcaC02g11551 Brassica carinata HOM05D003539 ORTHO05D004111 1.9e-25 120.9 297 31.6
Gohir.A02G120000 Gossypium hirsutum HOM05D003539 ORTHO05D004111 5.5e-25 119.4 131 48.1
Zm00001eb226160 Zea mays HOM05D003539 ORTHO05D004111 2.7e-24 117.1 269 31.6
Pp3c18_6750 Physcomitrium patens HOM05D003539 ORTHO05D004111 4.6e-24 116.3 202 33.7
Pp3c18_6751 Physcomitrium patens HOM05D003539 ORTHO05D004111 4.6e-24 116.3 202 33.7
AT1G30590 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 3.9e-23 113.2 248 34.3
Pp3c21_14490 Physcomitrium patens HOM05D003539 ORTHO05D004111 5.1e-23 112.8 201 33.8
GSVIVG01026439001 Vitis vinifera HOM05D003539 ORTHO05D004111 1.5e-22 111.3 107 48.6
BcaB05g23816 Brassica carinata HOM05D003539 ORTHO05D004111 2.5e-22 110.5 313 32.6
AT2G39240 Arabidopsis thaliana HOM05D003539 ORTHO05D004111 2.2e-21 107.5 302 30.8
BcaC06g35972 Brassica carinata HOM05D003539 ORTHO05D004111 2.8e-21 107.1 281 31.7
AL4G36550 Arabidopsis lyrata HOM05D003539 ORTHO05D004111 4.8e-21 106.3 169 42.0
PSO339G3936 Papaver somniferum HOM05D014828 ORTHO05D004111 1.4e-20 104.8 91 56.0
Mapoly0144s0013 Marchantia polymorpha HOM05D003539 ORTHO05D004111 4.1e-20 103.2 221 31.2
Cfa022001 Carpinus fangiana HOM05D003539 ORTHO05D004111 5.3e-20 102.8 117 46.2
C07p01640 Brassica napus HOM05D003539 ORTHO05D004111 6.9e-20 102.4 263 33.1
SMO356G0429 Selaginella moellendorffii HOM05D003539 ORTHO05D004111 6.9e-20 102.4 189 33.3
Ciclev10010838m.g Citrus clementina HOM05D003539 ORTHO05D004111 5.0e-18 96.3 174 34.5
DCAR_007549 Daucus carota HOM05D003539 ORTHO05D004111 1.2e-16 91.7 178 33.7
CBR_g23271 Chara braunii HOM05D003539 ORTHO05D004111 3.9e-15 86.7 210 29.0
Gohir.A02G119802 Gossypium hirsutum HOM05D003539 ORTHO05D004111 5.1e-15 86.3 153 33.3
Cpa.g.sc7.212 Carica papaya HOM05D003539 ORTHO05D004111 4.8e-13 79.7 97 46.4
RcHm_v2.0_Chr2g0096841 Rosa chinensis HOM05D003539 ORTHO05D004111 5.9e-11 72.8 205 28.3
Medtr8g085920 Medicago truncatula HOM05D003539 ORTHO05D004111 2.9e-10 70.5 89 44.9
AagrBONN_evm.TU.Sc2ySwM_368.2744 Anthoceros agrestis HOM05D003539 ORTHO05D004111 8.5e-10 68.9 179 25.1
C07p01430 Brassica napus HOM05D003539 ORTHO05D004111 8.5e-10 68.9 126 34.9
BcaC06g35981 Brassica carinata HOM05D003539 ORTHO05D004111 9.4e-09 65.5 186 31.2
Potri.007G065101 Populus trichocarpa HOM05D003539 ORTHO05D004111 9.4e-09 65.5 139 36.0
PSO063G5935 Papaver somniferum HOM05D015608 ORTHO05D302157 2.6e-06 57.4 61 44.3


User provided reference genes

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