Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 2.0e-172 609.0 304 100.0
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 3.6e-137 491.9 260 92.3
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 8.8e-136 487.3 260 91.5
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 1.8e-112 409.8 283 73.5
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 3.0e-112 409.1 258 74.4
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 5.7e-111 404.8 257 73.5
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 1.1e-109 400.6 257 74.7
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 1.4e-109 400.2 257 73.5
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 1.4e-109 400.2 257 73.9
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 1.2e-108 397.1 259 73.7
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 1.6e-108 396.7 258 73.3
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 5.9e-108 394.8 259 72.6
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 7.7e-108 394.4 258 72.1
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 7.7e-108 394.4 257 73.9
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 2.9e-107 392.5 257 72.4
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 1.1e-106 390.6 258 71.7
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 1.9e-106 389.8 261 70.5
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 3.3e-106 389.0 258 71.7
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 7.2e-106 387.9 259 70.3
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 9.5e-106 387.5 255 71.8
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 1.2e-105 387.1 265 69.8
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 1.2e-105 387.1 258 72.5
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 1.6e-105 386.7 259 71.4
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 1.6e-105 386.7 266 69.2
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 1.6e-105 386.7 256 71.1
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 2.1e-105 386.3 257 72.0
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 2.8e-105 386.0 258 70.9
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 2.8e-105 386.0 258 70.9
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 3.6e-105 385.6 276 67.8
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 3.6e-105 385.6 256 71.5
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 6.1e-105 384.8 257 70.8
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 1.0e-104 384.0 257 70.4
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 1.4e-104 383.6 260 70.0
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 1.4e-104 383.6 255 70.6
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 2.3e-104 382.9 260 70.4
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 2.3e-104 382.9 263 70.0
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 3.0e-104 382.5 266 68.0
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 3.0e-104 382.5 257 70.8
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 6.8e-104 381.3 267 67.8
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.2e-103 380.6 279 66.3
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 1.5e-103 380.2 259 70.3
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 1.5e-103 380.2 257 69.6
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 2.6e-103 379.4 268 68.7
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.6e-103 379.4 257 70.0
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 3.4e-103 379.0 258 71.3
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 5.7e-103 378.3 283 65.4
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 9.8e-103 377.5 257 70.8
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 1.3e-102 377.1 258 70.2
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 2.8e-102 375.9 264 70.5
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 3.7e-102 375.6 258 70.5
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 4.9e-102 375.2 257 69.6
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 6.3e-102 374.8 257 69.3
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 1.4e-101 373.6 259 68.3
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 1.8e-101 373.2 262 67.6
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 3.2e-101 372.5 257 68.5
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 3.2e-101 372.5 256 68.0
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 4.1e-101 372.1 256 69.1
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 4.1e-101 372.1 257 68.9
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 5.4e-101 371.7 273 66.3
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 1.2e-100 370.5 253 68.4
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 2.0e-100 369.8 260 67.3
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 2.0e-100 369.8 320 60.0
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 3.5e-100 369.0 256 68.0
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 3.5e-100 369.0 256 68.0
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 7.8e-100 367.9 256 67.2
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 7.8e-100 367.9 265 68.3
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 1.0e-99 367.5 256 68.0
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.3e-99 367.1 256 68.0
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 1.3e-99 367.1 262 66.0
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 1.3e-99 367.1 257 69.6
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 1.7e-99 366.7 257 67.7
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 1.7e-99 366.7 257 68.1
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 2.3e-99 366.3 256 67.6
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 3.9e-99 365.5 259 68.0
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 6.6e-99 364.8 257 68.5
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 8.6e-99 364.4 259 67.2
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 8.6e-99 364.4 257 68.5
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 8.6e-99 364.4 257 68.5
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 8.6e-99 364.4 257 68.9
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 8.6e-99 364.4 256 67.2
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 1.5e-98 363.6 257 67.3
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 2.5e-98 362.8 258 66.3
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 3.3e-98 362.5 257 68.1
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 4.3e-98 362.1 257 66.5
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 7.3e-98 361.3 259 66.8
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 2.1e-97 359.8 257 63.8
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 1.0e-96 357.5 263 63.9
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 1.0e-96 357.5 292 60.6
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 1.4e-96 357.1 260 67.3
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 2.3e-96 356.3 259 64.9
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 2.3e-96 356.3 257 65.0
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 3.1e-96 355.9 257 65.0
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 4.0e-96 355.5 260 65.4
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 6.8e-96 354.8 235 71.9
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 6.8e-96 354.8 257 65.8
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 7.5e-95 351.3 263 63.9
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 1.3e-94 350.5 263 65.0
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 1.7e-94 350.1 257 66.1
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 3.7e-94 349.0 257 65.4
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 1.9e-93 346.7 257 64.6
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 1.9e-93 346.7 259 63.7
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 2.7e-92 342.8 259 62.2
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 6.0e-92 341.7 293 57.3
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.7e-91 340.1 258 64.7
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 5.0e-91 338.6 257 61.9
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 1.9e-90 336.7 211 75.8
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 2.5e-90 336.3 216 73.1
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 3.3e-90 335.9 237 67.9
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 5.6e-90 335.1 211 73.5
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.1e-88 330.9 261 60.2
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 3.1e-88 329.3 212 71.2
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 6.8e-88 328.2 261 65.1
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 8.9e-88 327.8 257 62.3
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 1.5e-87 327.0 257 62.6
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 2.9e-86 322.8 195 77.4
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 1.6e-84 317.0 276 55.4
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 2.1e-84 316.6 211 68.7
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 2.7e-84 316.2 243 64.6
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 2.1e-81 306.6 195 73.3
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 4.7e-81 305.4 212 65.6
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 1.3e-78 297.4 195 70.8
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 3.7e-78 295.8 184 75.5
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 7.1e-77 291.6 191 73.3
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 2.1e-76 290.0 191 70.2
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 6.0e-76 288.5 231 56.7
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 1.0e-75 287.7 204 67.6
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 5.6e-74 282.0 230 56.5
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 9.6e-74 281.2 257 54.9
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 2.6e-71 273.1 252 52.8
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 2.9e-70 269.6 171 73.7
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 4.2e-69 265.8 227 59.9
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 2.7e-68 263.1 311 48.2
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 1.1e-64 251.1 291 45.4
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.6e-63 246.5 361 40.4
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 3.8e-62 242.7 182 64.3
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 1.8e-56 223.8 155 69.0
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 4.0e-56 222.6 235 49.8
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 7.6e-55 218.4 270 46.7
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 6.7e-51 205.3 209 51.7
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 5.6e-50 202.2 179 52.5
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 2.8e-49 199.9 180 54.4
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 1.0e-46 191.4 146 64.4
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 1.8e-43 180.6 135 63.0
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 2.1e-41 173.7 268 36.2
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.1e-41 173.7 126 63.5
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 2.6e-39 166.8 129 62.0
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 1.1e-37 161.4 321 34.6
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 3.5e-36 156.4 103 68.0
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 3.5e-36 156.4 274 34.3
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 1.7e-30 137.5 97 63.9
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.1e-29 134.8 194 39.7
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 1.4e-29 134.4 166 48.8
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 1.6e-28 131.0 111 56.8
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 4.6e-28 129.4 129 51.9
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 4.1e-24 116.3 165 40.6
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 2.0e-18 97.4 79 55.7
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 1.4e-16 91.3 138 37.7
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 4.1e-16 89.7 58 70.7
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 2.0e-15 87.4 80 55.0
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 2.9e-14 83.6 51 78.4
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 2.9e-14 83.6 51 78.4
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 7.2e-13 79.0 55 69.1
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 7.0e-08 62.4 37 75.7
CBR_g34733 Chara braunii HOM05D004412 ORTHO05D005316 1.2e-07 61.6 82 39.0
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 5.9e-07 59.3 47 57.4
MD02G1044000 Malus domestica HOM05D004412 ORTHO05D005316 7.7e-07 58.9 44 52.3
MD06G1023200 Malus domestica HOM05D004412 ORTHO05D005316 7.7e-07 58.9 44 52.3


User provided reference genes

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