Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G2171 Papaver somniferum HOM05D004632 ORTHO05D005556 3.1e-266 921.8 670 100.0
PSO063G4867 Papaver somniferum HOM05D004632 ORTHO05D005556 2.1e-259 899.0 669 98.5
Nn8g39852 Nelumbo nucifera HOM05D004632 ORTHO05D005556 4.7e-206 721.8 667 84.7
Dinv34967 Davidia involucrata HOM05D004632 ORTHO05D005556 1.1e-204 717.2 671 83.3
GSVIVG01035887001 Vitis vinifera HOM05D004632 ORTHO05D005556 4.4e-204 715.3 674 83.4
Aqoxy7G03810 Aquilegia oxysepala HOM05D004632 ORTHO05D005556 9.7e-204 714.1 668 84.1
Rhsim02G0214000 Rhododendron simsii HOM05D004632 ORTHO05D005556 1.3e-200 703.7 668 83.4
Prupe.1G392800 Prunus persica HOM05D004632 ORTHO05D005556 1.4e-197 693.7 672 82.0
CSS0008139 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 3.0e-197 692.6 668 82.0
RcHm_v2.0_Chr6g0299541 Rosa chinensis HOM05D004632 ORTHO05D005556 5.0e-192 675.2 666 82.3
MBI15_g05236_MAGBIO Magnolia biondii HOM05D004632 ORTHO05D005556 7.2e-191 671.4 455 76.5
Cc09_g08590 Coffea canephora HOM05D004632 ORTHO05D005556 9.4e-191 671.0 672 79.6
CiPaw.07G229300 Carya illinoinensis HOM05D004632 ORTHO05D005556 1.4e-189 667.2 677 79.9
FAN20G0152 Fragaria x ananassa HOM05D004632 ORTHO05D005556 5.2e-189 665.2 680 79.7
FAN20G1191 Fragaria x ananassa HOM05D004632 ORTHO05D005556 6.8e-189 664.8 681 79.6
Sed0004025 Sechium edule HOM05D004632 ORTHO05D005556 8.8e-189 664.5 671 79.9
Actinidia22297 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.5e-188 663.7 666 79.9
CsaV3_4G036640 Cucumis sativus L. HOM05D004632 ORTHO05D005556 4.4e-188 662.1 671 79.3
FvH4_2g41020 Fragaria vesca HOM05D004632 ORTHO05D005556 1.7e-187 660.2 666 80.8
MELO3C016968.2 Cucumis melo HOM05D004632 ORTHO05D005556 3.7e-187 659.1 671 79.0
Duzib168G2284 Durio zibethinus HOM05D004632 ORTHO05D005556 4.1e-186 655.6 661 80.0
Manes.16G128700 Manihot esculenta HOM05D004632 ORTHO05D005556 4.1e-186 655.6 668 79.5
Potri.018G020200 Populus trichocarpa HOM05D004632 ORTHO05D005556 5.4e-186 655.2 673 78.9
Potri.006G263400 Populus trichocarpa HOM05D004632 ORTHO05D005556 2.5e-183 646.4 673 78.0
FAN27G1200 Fragaria x ananassa HOM05D004632 ORTHO05D005556 3.6e-182 642.5 455 74.1
MD00G1143300 Malus domestica HOM05D004632 ORTHO05D005556 4.7e-182 642.1 462 73.2
Peaxi162Scf00430g00519 Petunia axillaris HOM05D004632 ORTHO05D005556 8.0e-182 641.3 671 77.9
Lalb_Chr23g0268241 Lupinus albus HOM05D004632 ORTHO05D005556 1.8e-181 640.2 666 77.6
CAN.G199.61 Capsicum annuum HOM05D004632 ORTHO05D005556 5.2e-181 638.6 673 77.1
Phvul.009G087600 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 6.8e-181 638.3 671 78.1
VMungo1309G0882 Vigna mungo HOM05D004632 ORTHO05D005556 6.8e-181 638.3 670 78.1
HanXRQChr03g0084861 Helianthus annuus HOM05D004632 ORTHO05D005556 8.9e-181 637.9 666 77.3
ECA240G3507 Erigeron canadensis HOM05D004632 ORTHO05D005556 1.2e-180 637.5 665 77.6
Ciclev10007613m.g Citrus clementina HOM05D004632 ORTHO05D005556 2.0e-180 636.7 671 78.4
Psat5g032640 Pisum sativum HOM05D004632 ORTHO05D005556 5.7e-180 635.2 668 77.5
Glyma.06G062300 Glycine max HOM05D004632 ORTHO05D005556 7.5e-180 634.8 668 78.4
ClCG05G016370 Citrullus lanatus HOM05D004632 ORTHO05D005556 9.8e-180 634.4 678 77.6
Sabra06G0205900 Salix brachista HOM05D004632 ORTHO05D005556 1.3e-179 634.0 669 77.7
Medtr3g106080 Medicago truncatula HOM05D004632 ORTHO05D005556 2.9e-179 632.9 670 77.2
TPR.G1835 Trifolium pratense HOM05D004632 ORTHO05D005556 2.9e-179 632.9 670 77.2
Ca_15774_v3 Cicer arietinum L. HOM05D004632 ORTHO05D005556 3.7e-179 632.5 670 77.2
ATR0739G094 Amborella trichopoda HOM05D004632 ORTHO05D005556 1.1e-178 630.9 667 77.8
Atru.chr7.2537 Acer truncatum HOM05D004632 ORTHO05D005556 1.4e-178 630.6 678 76.7
DCAR_015265 Daucus carota HOM05D004632 ORTHO05D005556 3.2e-178 629.4 672 77.5
Glyma.04G061600 Glycine max HOM05D004632 ORTHO05D005556 9.2e-178 627.9 669 77.9
Cpa.g.sc127.22 Carica papaya HOM05D004632 ORTHO05D005556 1.2e-177 627.5 459 69.5
TWI32G0830 Tripterygium wilfordii HOM05D004632 ORTHO05D005556 1.2e-177 627.5 674 75.7
arahy.Tifrunner.gnm1.ann1.8PBG0P Arachis hypogaea HOM05D004632 ORTHO05D005556 3.5e-177 625.9 666 77.5
MSTRG.9370 Avicennia marina HOM05D004632 ORTHO05D005556 3.5e-177 625.9 670 77.2
arahy.Tifrunner.gnm1.ann1.21LKMJ Arachis hypogaea HOM05D004632 ORTHO05D005556 1.7e-176 623.6 455 69.9
Solyc06g065700.3 Solanum lycopersicum HOM05D004632 ORTHO05D005556 5.0e-176 622.1 679 75.0
Lj1g0022186 Lotus japonicus HOM05D004632 ORTHO05D005556 8.6e-176 621.3 666 76.9
Sopen06g024220 Solanum pennellii HOM05D004632 ORTHO05D005556 1.5e-175 620.5 678 75.1
EL10Ac1g00704 Beta vulgaris HOM05D004632 ORTHO05D005556 3.3e-175 619.4 678 74.6
Gohir.A05G058900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 7.3e-175 618.2 661 77.8
Migut.N00603 Erythranthe guttata HOM05D004632 ORTHO05D005556 2.8e-174 616.3 670 76.7
Lsat_1_v5_gn_6_77900 Lactuca sativa HOM05D004632 ORTHO05D005556 1.0e-173 614.4 676 75.9
HPP92_014401 Vanilla planifolia HOM05D004632 ORTHO05D005556 1.8e-173 613.6 666 76.9
Lsat_1_v5_gn_7_4261 Lactuca sativa HOM05D004632 ORTHO05D005556 5.2e-173 612.1 462 68.6
PGR042G1415 Punica granatum HOM05D004632 ORTHO05D005556 2.6e-172 609.8 674 76.3
Lj7A732T26 Lonicera japonica HOM05D004632 ORTHO05D005556 8.3e-171 604.7 661 72.6
BcaB04g19812 Brassica carinata HOM05D004632 ORTHO05D005556 7.0e-170 601.7 674 74.2
Gorai.001G037500 Gossypium raimondii HOM05D004632 ORTHO05D005556 2.7e-169 599.7 661 77.2
Os06g0649500 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 3.9e-168 595.9 456 67.5
Gohir.A07G031900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 8.6e-168 594.7 661 76.7
Gohir.D07G035600 Gossypium hirsutum HOM05D004632 ORTHO05D005556 8.6e-168 594.7 661 76.7
A09p06280 Brassica napus HOM05D004632 ORTHO05D005556 1.1e-167 594.3 672 74.9
Eucgr.C02661 Eucalyptus grandis HOM05D004632 ORTHO05D005556 1.1e-167 594.3 689 74.0
BolC9t53613H Brassica oleracea HOM05D004632 ORTHO05D005556 1.9e-167 593.6 672 74.3
BraA09t36273Z Brassica rapa HOM05D004632 ORTHO05D005556 3.3e-167 592.8 672 74.7
Ah.05g177560 Amaranthus hybridus HOM05D004632 ORTHO05D005556 7.3e-167 591.7 475 66.9
CDE05G3472 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 3.1e-165 586.3 668 64.8
C09p06950 Brassica napus HOM05D004632 ORTHO05D005556 5.2e-165 585.5 672 74.0
BcaC04g23574 Brassica carinata HOM05D004632 ORTHO05D005556 6.8e-165 585.1 672 73.8
THA.LOC104814991 Tarenaya hassleriana HOM05D004632 ORTHO05D005556 4.4e-164 582.4 679 73.6
SGA_v2.0_scaffold40G15680 Striga asiatica HOM05D004632 ORTHO05D005556 4.9e-163 578.9 705 71.2
BolC2t12041H Brassica oleracea HOM05D004632 ORTHO05D005556 5.4e-162 575.5 671 73.2
AT5G25150 Arabidopsis thaliana HOM05D004632 ORTHO05D005556 2.5e-159 566.6 675 73.8
Sp2g22380 Schrenkiella parvula HOM05D004632 ORTHO05D005556 2.5e-159 566.6 672 73.2
CSS0046974 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 2.8e-158 563.1 616 77.1
MSTRG.4644 Avicennia marina HOM05D004632 ORTHO05D005556 3.6e-158 562.8 671 73.3
Phvul.001G042300 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 3.6e-158 562.8 666 72.7
Nitab4.5_0007182g0050 Nicotiana tabacum HOM05D004632 ORTHO05D005556 4.7e-158 562.4 454 66.1
C02p59830 Brassica napus HOM05D004632 ORTHO05D005556 1.8e-157 560.5 671 72.1
Thhalv10003767m.g Eutrema salsugineum HOM05D004632 ORTHO05D005556 6.8e-157 558.5 673 73.1
Carub.0006s2297 Capsella rubella HOM05D004632 ORTHO05D005556 1.5e-156 557.4 672 72.6
TAR626G1191 Trochodendron aralioides HOM05D004632 ORTHO05D005556 2.0e-156 557.0 565 84.8
Glyma.17G222200 Glycine max HOM05D004632 ORTHO05D005556 5.8e-156 555.4 666 72.1
VMungo0647G2075 Vigna mungo HOM05D004632 ORTHO05D005556 1.7e-155 553.9 666 71.8
A02p39940 Brassica napus HOM05D004632 ORTHO05D005556 1.9e-154 550.4 671 72.1
vmacro11252 Vaccinium macrocarpon HOM05D004632 ORTHO05D005556 2.4e-154 550.1 601 62.7
Nitab4.5_0003976g0020 Nicotiana tabacum HOM05D004632 ORTHO05D005556 4.1e-154 549.3 725 65.0
BraA02t08956Z Brassica rapa HOM05D004632 ORTHO05D005556 5.4e-154 548.9 671 71.8
Aa31LG11G4400 Aethionema arabicum HOM05D004632 ORTHO05D005556 1.6e-153 547.4 463 62.6
Thecc.09G016800 Theobroma cacao HOM05D004632 ORTHO05D005556 1.3e-152 544.3 570 82.1
CARHR188340 Cardamine hirsuta HOM05D004632 ORTHO05D005556 1.2e-150 537.7 459 62.1
Haze_21427 Corylus avellana HOM05D004632 ORTHO05D005556 6.8e-149 531.9 463 64.8
AUR62023356 Chenopodium quinoa HOM05D004632 ORTHO05D005556 1.1e-146 524.6 670 67.6
AUR62013801 Chenopodium quinoa HOM05D004632 ORTHO05D005556 2.4e-146 523.5 612 71.4
SalBow1G2567 Salvia bowleyana HOM05D004632 ORTHO05D005556 1.6e-145 520.8 386 69.7
Hund27424 Selenicereus undatus HOM05D004632 ORTHO05D005556 4.6e-145 519.2 579 53.9
BcaB07g29936 Brassica carinata HOM05D004632 ORTHO05D005556 1.1e-143 514.6 456 59.2
AL6G36810 Arabidopsis lyrata HOM05D004632 ORTHO05D005556 3.6e-142 509.6 442 62.4
Zm00001eb388650 Zea mays HOM05D004632 ORTHO05D005556 3.1e-141 506.5 569 79.3
TAR625G0176 Trochodendron aralioides HOM05D004632 ORTHO05D005556 1.2e-129 468.0 356 70.8
Oeu061252.3 Olea europaea HOM05D004632 ORTHO05D005556 1.6e-129 467.6 703 64.6
BcaC03g17924 Brassica carinata HOM05D004632 ORTHO05D005556 1.1e-127 461.5 671 67.1
Mapoly0009s0169 Marchantia polymorpha HOM05D004632 ORTHO05D005556 6.5e-123 445.7 683 64.6
Gohir.D05G060932 Gossypium hirsutum HOM05D004632 ORTHO05D005556 6.0e-121 439.1 631 57.7
Pp3c12_23330 Physcomitrium patens HOM05D004632 ORTHO05D005556 1.3e-120 438.0 466 53.0
MD15G1039100 Malus domestica HOM05D004632 ORTHO05D005556 2.6e-108 397.1 318 67.0
Oeu013659.1 Olea europaea HOM05D004632 ORTHO05D005556 6.5e-107 392.5 279 71.7
CSS0042581 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 1.9e-106 391.0 293 72.4
SMO118G0104 Selaginella moellendorffii HOM05D004632 ORTHO05D005556 1.4e-104 384.8 404 52.2
Actinidia13189 Actinidia chinensis HOM05D004632 ORTHO05D005556 7.5e-87 325.9 668 58.8
Zm00001eb259920 Zea mays HOM05D004632 ORTHO05D005556 1.5e-71 275.0 199 71.4
COL.COLO4_18941 Corchorus olitorius HOM05D004632 ORTHO05D005556 2.3e-67 261.2 383 44.4
SEGI_13945 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 3.3e-58 230.7 163 68.7
MD15G1039000 Malus domestica HOM05D004632 ORTHO05D005556 3.6e-57 227.3 141 80.1
PRCOL_00000651 Prasinoderma coloniale HOM05D004632 ORTHO05D005556 3.7e-54 217.2 470 32.1
Sed0017212 Sechium edule HOM05D004632 ORTHO05D005556 4.9e-54 216.9 578 46.5
Dinv40981 Davidia involucrata HOM05D004632 ORTHO05D005556 1.0e-51 209.1 279 49.8
MCO11G306 Micromonas commoda HOM05D004632 ORTHO05D005556 8.6e-51 206.1 481 31.8
VMungo1309G1582 Vigna mungo HOM05D004632 ORTHO05D005556 1.5e-50 205.3 166 65.7
CBR_g41144 Chara braunii HOM05D004632 ORTHO05D005556 2.8e-49 201.1 193 49.7
PSO541G0014 Papaver somniferum HOM05D004632 ORTHO05D005556 1.3e-46 192.2 116 87.1
MCO11G293 Micromonas commoda HOM05D004632 ORTHO05D005556 6.4e-46 189.9 527 29.6
SEGI_28232 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 6.4e-46 189.9 157 64.3
Manes.03G009801 Manihot esculenta HOM05D004632 ORTHO05D005556 2.4e-45 188.0 390 40.3
CDE05G1210 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 2.7e-44 184.5 143 66.4
CDE05G3588 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 1.6e-41 175.3 130 66.2
AagrBONN_evm.TU.Sc2ySwM_228.3176 Anthoceros agrestis HOM05D003428 ORTHO05D004131 3.2e-37 161.0 147 54.4
CBR_g39739 Chara braunii HOM05D004632 ORTHO05D005556 3.5e-36 157.5 290 37.2
Actinidia10511 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.0e-35 156.0 143 58.0
Hma1.2p1_0059F.1_g032640 Hydrangea macrophylla HOM05D004632 ORTHO05D005556 8.9e-32 142.9 293 88.1
Actinidia10512 Actinidia chinensis HOM05D004632 ORTHO05D005556 5.4e-21 107.1 82 67.1
Sabra18G0022500 Salix brachista HOM05D004632 ORTHO05D005556 2.1e-20 105.1 285 34.4
Glyma.14G103500 Glycine max HOM05D004632 ORTHO05D005556 1.9e-18 98.6 107 50.5
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 9.6e-18 96.3 527 23.9
Actinidia09762 Actinidia chinensis HOM05D004632 ORTHO05D005556 4.8e-17 94.0 66 66.7
SEGI_29407 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 8.1e-17 93.2 63 66.7
SEGI_30848 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.7e-14 85.5 77 53.2
MD15G1038900 Malus domestica HOM05D004632 ORTHO05D005556 4.9e-14 84.0 52 82.7
FAN15G3250 Fragaria x ananassa HOM05D004632 ORTHO05D005556 2.1e-12 78.6 50 78.0
Cfa022837 Carpinus fangiana HOM05D004632 ORTHO05D005556 3.9e-11 74.3 498 23.1
Haze_26425 Corylus avellana HOM05D004632 ORTHO05D005556 2.5e-10 71.6 179 29.6
Os07g0205200 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 2.5e-10 71.6 84 48.8
Glyma.14G103600 Glycine max HOM05D004632 ORTHO05D005556 4.8e-09 67.4 48 72.9
Zm00001eb086350 Zea mays HOM05D008576 ORTHO05D000385 3.4e-07 61.2 51 66.7
Dinv40325 Davidia involucrata HOM05D004632 ORTHO05D005556 7.6e-07 60.1 37 75.7
SEGI_21073 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.3e-06 59.3 50 66.0
Actinidia36729 Actinidia chinensis HOM05D004632 ORTHO05D005556 2.2e-06 58.5 135 30.4
Zm00001eb239900 Zea mays HOM05D004632 ORTHO05D005556 4.9e-06 57.4 49 65.3


User provided reference genes

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