Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G1729 Papaver somniferum HOM05D005002 ORTHO05D006016 3.9e-70 268.1 142 100.0
PSO478G2205 Papaver somniferum HOM05D005002 ORTHO05D006016 6.2e-68 260.8 140 98.6
Gohir.A07G034400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 2.7e-55 218.8 136 86.0
Gohir.D07G038000 Gossypium hirsutum HOM05D005002 ORTHO05D006016 2.7e-55 218.8 136 86.0
Gorai.001G039800 Gossypium raimondii HOM05D005002 ORTHO05D006016 2.7e-55 218.8 136 86.0
Duzib168G1293 Durio zibethinus HOM05D005002 ORTHO05D006016 4.6e-55 218.0 136 85.3
Rhsim07G0172200 Rhododendron simsii HOM05D001416 ORTHO05D005885 4.6e-55 218.0 138 83.3
CAN.G566.59 Capsicum annuum HOM05D005002 ORTHO05D006016 6.1e-55 217.6 144 83.3
TAR622G0454 Trochodendron aralioides HOM05D005002 ORTHO05D006016 1.3e-54 216.5 138 84.8
Solyc12g096470.2 Solanum lycopersicum HOM05D005002 ORTHO05D006016 3.0e-54 215.3 138 82.6
Sopen12g032300 Solanum pennellii HOM05D005002 ORTHO05D006016 3.0e-54 215.3 138 82.6
PGSC0003DMG400029278 Solanum tuberosum HOM05D005002 ORTHO05D006016 3.0e-54 215.3 138 82.6
Nitab4.5_0001110g0170 Nicotiana tabacum HOM05D005002 ORTHO05D006016 3.9e-54 214.9 144 81.2
Dinv03972 Davidia involucrata HOM05D005002 ORTHO05D006016 8.7e-54 213.8 136 86.0
Gohir.A05G062833 Gossypium hirsutum HOM05D005002 ORTHO05D006016 8.7e-54 213.8 136 83.8
Gohir.A05G062900 Gossypium hirsutum HOM05D005002 ORTHO05D006016 8.7e-54 213.8 136 83.8
Gohir.D05G065400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 8.7e-54 213.8 136 83.8
Gorai.009G066200 Gossypium raimondii HOM05D005002 ORTHO05D006016 8.7e-54 213.8 136 83.8
ClCG08G013890 Citrullus lanatus HOM05D005002 ORTHO05D006016 1.1e-53 213.4 136 83.1
QL01p029339 Quercus lobata HOM05D005002 ORTHO05D006016 1.1e-53 213.4 139 82.0
Peaxi162Scf00459g00833 Petunia axillaris HOM05D005002 ORTHO05D006016 2.5e-53 212.2 140 81.4
Actinidia03570 Actinidia chinensis HOM05D005002 ORTHO05D006016 7.4e-53 210.7 136 82.4
Thecc.09G010700 Theobroma cacao HOM05D005002 ORTHO05D006016 9.7e-53 210.3 136 81.6
CSS0035568 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.6e-52 209.5 136 83.1
Dinv03977 Davidia involucrata HOM05D005002 ORTHO05D006016 2.2e-52 209.1 136 83.1
BcaNung05179 Brassica carinata HOM05D005002 ORTHO05D006016 2.8e-52 208.8 134 79.9
A01p06560 Brassica napus HOM05D005002 ORTHO05D006016 2.8e-52 208.8 134 79.9
BraA01t00615Z Brassica rapa HOM05D005002 ORTHO05D006016 2.8e-52 208.8 134 79.9
CSS0022428 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 2.8e-52 208.8 136 82.4
Carub.0007s0884 Capsella rubella HOM05D005002 ORTHO05D006016 2.8e-52 208.8 134 79.9
Sed0020410 Sechium edule HOM05D005002 ORTHO05D006016 2.8e-52 208.8 136 79.4
EL10Ac2g02432 Beta vulgaris HOM05D005002 ORTHO05D006016 3.7e-52 208.4 132 81.8
RcHm_v2.0_Chr6g0269591 Rosa chinensis HOM05D005002 ORTHO05D006016 3.7e-52 208.4 141 81.6
Sed0003546 Sechium edule HOM05D005002 ORTHO05D006016 3.7e-52 208.4 135 78.5
AT4G31720 Arabidopsis thaliana HOM05D005002 ORTHO05D006016 6.3e-52 207.6 134 79.1
C01p07220 Brassica napus HOM05D005002 ORTHO05D006016 6.3e-52 207.6 136 77.9
BolC1t00713H Brassica oleracea HOM05D005002 ORTHO05D006016 6.3e-52 207.6 136 77.9
THA.LOC104803866 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 6.3e-52 207.6 134 79.1
AL7G20310 Arabidopsis lyrata HOM05D005002 ORTHO05D006016 8.2e-52 207.2 134 79.1
Eucgr.B03202 Eucalyptus grandis HOM05D005002 ORTHO05D006016 8.2e-52 207.2 132 79.5
Oeu008768.2 Olea europaea HOM05D005002 ORTHO05D006016 8.2e-52 207.2 136 80.1
PGR044G1228 Punica granatum HOM05D005002 ORTHO05D006016 8.2e-52 207.2 129 82.2
Sp7g29520 Schrenkiella parvula HOM05D005002 ORTHO05D006016 8.2e-52 207.2 134 79.1
GSVIVG01023467001 Vitis vinifera HOM05D005002 ORTHO05D006016 8.2e-52 207.2 140 80.7
Prupe.1G399400 Prunus persica HOM05D005002 ORTHO05D006016 1.1e-51 206.8 143 79.7
VMungo1383G2539 Vigna mungo HOM05D005002 ORTHO05D006016 1.1e-51 206.8 143 78.3
BcaC09g51961 Brassica carinata HOM05D005002 ORTHO05D006016 1.4e-51 206.5 134 78.4
BraA08t33811Z Brassica rapa HOM05D005002 ORTHO05D006016 1.4e-51 206.5 134 79.1
Glyma.18G054400 Glycine max HOM05D005002 ORTHO05D006016 1.4e-51 206.5 140 80.0
GSVIVG01023464001 Vitis vinifera HOM05D005002 ORTHO05D006016 1.8e-51 206.1 140 79.3
THA.LOC104819944 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 2.4e-51 205.7 139 77.7
vmacro05092 Vaccinium macrocarpon HOM05D005002 ORTHO05D006016 2.4e-51 205.7 136 80.1
Lj1g0025268 Lotus japonicus HOM05D005002 ORTHO05D006016 3.1e-51 205.3 135 80.0
Phvul.008G002400 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 3.1e-51 205.3 140 80.0
MSTRG.25811 Avicennia marina HOM05D005002 ORTHO05D006016 6.9e-51 204.1 137 77.4
Glyma.11G160400 Glycine max HOM05D005002 ORTHO05D006016 6.9e-51 204.1 140 78.6
Aa31LG2G18620 Aethionema arabicum HOM05D005002 ORTHO05D006016 1.2e-50 203.4 130 76.9
MD08G1049200 Malus domestica HOM05D005002 ORTHO05D006016 1.2e-50 203.4 143 77.6
Lalb_Chr08g0234011 Lupinus albus HOM05D005002 ORTHO05D006016 2.0e-50 202.6 136 79.4
VMungo1383G3578 Vigna mungo HOM05D005002 ORTHO05D006016 2.0e-50 202.6 140 78.6
A08p18490 Brassica napus HOM05D005002 ORTHO05D006016 2.6e-50 202.2 134 76.9
Thhalv10026546m.g Eutrema salsugineum HOM05D005002 ORTHO05D006016 2.6e-50 202.2 134 76.1
FvH4_2g11240 Fragaria vesca HOM05D005002 ORTHO05D006016 2.6e-50 202.2 145 77.2
Migut.A00405 Erythranthe guttata HOM05D005002 ORTHO05D006016 3.4e-50 201.8 137 76.6
HanXRQChr07g0195931 Helianthus annuus HOM05D005002 ORTHO05D006016 3.4e-50 201.8 136 77.2
Manes.03G005700 Manihot esculenta HOM05D005002 ORTHO05D006016 5.9e-50 201.1 144 75.0
BcaB03g12714 Brassica carinata HOM05D005002 ORTHO05D006016 7.7e-50 200.7 134 77.6
CSS0010222 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 7.7e-50 200.7 136 80.9
CANSAT25G2804 Cannabis sativa HOM05D005002 ORTHO05D006016 1.3e-49 199.9 140 75.7
Ciclev10009813m.g Citrus clementina HOM05D005002 ORTHO05D006016 1.3e-49 199.9 152 74.3
HanXRQChr14g0453401 Helianthus annuus HOM05D005002 ORTHO05D006016 1.3e-49 199.9 138 74.6
Medtr7g080740 Medicago truncatula HOM05D005002 ORTHO05D006016 2.2e-49 199.1 142 76.1
Nn3g17630 Nelumbo nucifera HOM05D005002 ORTHO05D006016 2.2e-49 199.1 145 76.6
TWI34G0825 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 2.2e-49 199.1 138 77.5
Cc00_g22050 Coffea canephora HOM05D005002 ORTHO05D006016 5.0e-49 198.0 149 74.5
ECA238G2697 Erigeron canadensis HOM05D005002 ORTHO05D006016 5.0e-49 198.0 142 73.2
Sc23g0006270 Simmondsia chinensis HOM05D005002 ORTHO05D006016 6.5e-49 197.6 127 81.1
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 8.5e-49 197.2 123 82.9
DCAR_020712 Daucus carota HOM05D005002 ORTHO05D006016 8.5e-49 197.2 123 82.9
Aqoxy7G00066 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 4.2e-48 194.9 123 82.9
TPR.G12644 Trifolium pratense HOM05D005002 ORTHO05D006016 4.2e-48 194.9 141 74.5
BcaC01g01070 Brassica carinata HOM05D005002 ORTHO05D006016 5.5e-48 194.5 122 80.3
C03p87650 Brassica napus HOM05D005002 ORTHO05D006016 5.5e-48 194.5 122 80.3
FAN24G1669 Fragaria x ananassa HOM05D005002 ORTHO05D006016 7.2e-48 194.1 169 68.0
Lsat_1_v5_gn_6_32161 Lactuca sativa HOM05D005002 ORTHO05D006016 9.4e-48 193.7 139 71.9
QL02p017669 Quercus lobata HOM05D005002 ORTHO05D006016 9.4e-48 193.7 136 76.5
TPR.G15628 Trifolium pratense HOM05D005002 ORTHO05D006016 1.2e-47 193.4 144 70.8
TWI63G0754 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 1.6e-47 193.0 163 68.1
Sabra18G0017200 Salix brachista HOM05D005002 ORTHO05D006016 2.7e-47 192.2 123 81.3
Psat0s2083g0280 Pisum sativum HOM05D005002 ORTHO05D006016 6.1e-47 191.0 142 71.8
arahy.Tifrunner.gnm1.ann1.1V29TX Arachis hypogaea HOM05D005002 ORTHO05D006016 7.9e-47 190.7 137 74.5
Potri.018G013300 Populus trichocarpa HOM05D005002 ORTHO05D006016 7.9e-47 190.7 123 80.5
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 7.9e-47 190.7 144 72.9
ATR0691G047 Amborella trichopoda HOM05D005002 ORTHO05D006016 1.0e-46 190.3 131 75.6
CDE04G1191 Ceratophyllum demersum HOM05D005002 ORTHO05D006016 1.0e-46 190.3 133 72.9
Lalb_Chr10g0091021 Lupinus albus HOM05D005002 ORTHO05D006016 1.0e-46 190.3 136 74.3
RcHm_v2.0_Chr2g0161651 Rosa chinensis HOM05D005002 ORTHO05D006016 3.9e-46 188.3 124 81.5
HPP92_000490 Vanilla planifolia HOM05D005002 ORTHO05D006016 3.9e-46 188.3 132 72.7
MD15G1045700 Malus domestica HOM05D005002 ORTHO05D006016 6.7e-46 187.6 141 72.3
arahy.Tifrunner.gnm1.ann1.JDP7FN Arachis hypogaea HOM05D005002 ORTHO05D006016 3.3e-45 185.3 144 71.5
Os09g0431500 Oryza sativa ssp. japonica HOM05D005002 ORTHO05D006016 5.3e-43 177.9 127 70.1
Zm00001eb313590 Zea mays HOM05D005002 ORTHO05D006016 7.7e-42 174.1 124 70.2
Cfa017847 Carpinus fangiana HOM05D005002 ORTHO05D006016 1.0e-41 173.7 134 70.9
Actinidia14152 Actinidia chinensis HOM05D005002 ORTHO05D006016 1.7e-41 172.9 109 85.3
AUR62037698 Chenopodium quinoa HOM05D005002 ORTHO05D006016 2.2e-41 172.6 113 82.3
BcaC09g51955 Brassica carinata HOM05D005002 ORTHO05D006016 3.8e-41 171.8 124 71.8
CSS0031521 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 3.8e-41 171.8 109 86.2
Hma1.2p1_0192F.1_g083460 Hydrangea macrophylla HOM05D005002 ORTHO05D006016 6.5e-41 171.0 105 88.6
AUR62020301 Chenopodium quinoa HOM05D005002 ORTHO05D006016 1.4e-40 169.9 111 82.0
MELO3C011321.2 Cucumis melo HOM05D005002 ORTHO05D006016 7.2e-40 167.5 114 79.8
Haze_18362 Corylus avellana HOM05D005002 ORTHO05D006016 1.6e-39 166.4 109 83.5
FAN15G1411 Fragaria x ananassa HOM05D000348 ORTHO05D000244 6.1e-39 164.5 106 83.0
BolC3t21083H Brassica oleracea HOM05D000888 ORTHO05D000740 1.4e-38 163.3 107 78.5
Ca_06528_v3 Cicer arietinum L. HOM05D005002 ORTHO05D006016 3.0e-38 162.2 115 78.3
Ah.09g224730 Amaranthus hybridus HOM05D005002 ORTHO05D006016 1.7e-36 156.4 144 64.6
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 4.8e-36 154.8 108 73.1
SalBow4G2991 Salvia bowleyana HOM05D005002 ORTHO05D006016 4.8e-36 154.8 110 77.3
Pp3c6_16040 Physcomitrium patens HOM05D005002 ORTHO05D006016 8.2e-36 154.1 116 64.7
Mapoly0011s0105 Marchantia polymorpha HOM05D005002 ORTHO05D006016 3.1e-35 152.1 126 62.7
COL.COLO4_21113 Corchorus olitorius HOM05D005002 ORTHO05D006016 1.3e-33 146.7 98 79.6
BcaC09g51957 Brassica carinata HOM05D005002 ORTHO05D006016 8.0e-31 137.5 120 66.7
unitig_93.g30701 Utricularia gibba HOM05D005002 ORTHO05D006016 8.8e-30 134.0 144 58.3
Lju41A41T35 Lonicera japonica HOM05D005002 ORTHO05D006016 2.0e-29 132.9 182 48.4
Aqoxy7G00833 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 2.2e-28 129.4 73 89.0
Duzib168G1591 Durio zibethinus HOM05D005002 ORTHO05D006016 2.2e-28 129.4 84 84.5
COL.COLO4_19003 Corchorus olitorius HOM05D005002 ORTHO05D006016 3.7e-28 128.6 85 82.4
SMO141G0065 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 9.1e-27 124.0 120 56.7
Duzib150G1286 Durio zibethinus HOM05D005002 ORTHO05D006016 3.5e-26 122.1 74 82.4
CARHR239610 Cardamine hirsuta HOM05D005002 ORTHO05D006016 1.3e-25 120.2 82 75.6
RcHm_v2.0_Chr2g0161711 Rosa chinensis HOM05D005002 ORTHO05D006016 6.5e-25 117.9 84 78.6
MSTRG.9875 Avicennia marina HOM05D005002 ORTHO05D006016 1.5e-24 116.7 84 77.4
Duzib187G1493 Durio zibethinus HOM05D005002 ORTHO05D006016 1.5e-24 116.7 86 76.7
CBR_g30254 Chara braunii HOM05D005002 ORTHO05D006016 1.9e-24 116.3 104 54.8
SMO356G0735 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 7.2e-24 114.4 112 50.0
MBI15_g18374_MAGBIO Magnolia biondii HOM05D005002 ORTHO05D006016 1.6e-23 113.2 134 53.7
SGA_v2.0_scaffold193G40677 Striga asiatica HOM05D005002 ORTHO05D006016 2.1e-23 112.8 114 57.0
Lalb_Chr08g0233961 Lupinus albus HOM05D005002 ORTHO05D006016 1.2e-18 97.1 52 92.3
Nitab4.5_0000668g0030 Nicotiana tabacum HOM05D005002 ORTHO05D006016 2.0e-18 96.3 64 81.2
CiPaw.15G092700 Carya illinoinensis HOM05D005002 ORTHO05D006016 1.1e-16 90.5 52 84.6
FAN27G2219 Fragaria x ananassa HOM05D005002 ORTHO05D006016 1.5e-16 90.1 61 77.0
COL.COLO4_27723 Corchorus olitorius HOM05D005002 ORTHO05D006016 4.2e-16 88.6 56 78.6
PRCOL_00006189 Prasinoderma coloniale HOM05D005002 ORTHO05D006016 1.6e-15 86.7 125 34.4
FAN20G1660 Fragaria x ananassa HOM05D005002 ORTHO05D006016 6.1e-15 84.7 61 72.1
Lalb_Chr08g0233981 Lupinus albus HOM05D005002 ORTHO05D006016 6.1e-15 84.7 65 67.7
SEGI_02469 Sequoiadendron giganteum HOM05D005002 ORTHO05D006016 8.9e-14 80.9 61 73.8
EL10Ac5g10893 Beta vulgaris HOM05D005002 ORTHO05D006016 3.4e-13 79.0 43 83.7
MCO01G145 Micromonas commoda HOM05D005002 ORTHO05D006016 5.7e-13 78.2 107 40.2
Phvul.009G222000 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 7.5e-13 77.8 80 58.8
QL12p013723 Quercus lobata HOM05D005002 ORTHO05D006016 4.9e-12 75.1 60 73.3
Actinidia25736 Actinidia chinensis HOM05D005002 ORTHO05D006016 2.9e-09 65.9 86 51.2
Cre16.g657000 Chlamydomonas reinhardtii HOM05D005002 ORTHO05D006016 3.3e-08 62.4 126 34.1
HanXRQChr14g0435251 Helianthus annuus HOM05D005002 ORTHO05D006016 4.7e-07 58.5 56 57.1


User provided reference genes

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