Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 2.6e-121 438.7 224 100.0
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 1.3e-115 419.9 224 96.0
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 8.5e-112 407.1 224 93.3
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 4.1e-90 335.1 224 75.9
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 1.3e-88 330.1 225 76.0
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 2.2e-83 312.8 224 71.0
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 4.9e-83 311.6 230 70.0
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 6.4e-83 311.2 221 73.8
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 1.5e-79 300.1 225 70.2
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 3.5e-73 278.9 201 71.1
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 2.5e-71 272.7 229 65.1
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 5.6e-71 271.6 225 64.0
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 5.6e-71 271.6 204 67.6
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 6.8e-69 264.6 227 63.9
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 6.8e-69 264.6 201 64.7
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 6.8e-69 264.6 226 63.3
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 2.0e-68 263.1 226 63.3
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 2.0e-68 263.1 226 63.3
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 3.4e-68 262.3 223 64.1
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 5.8e-68 261.5 222 63.5
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 7.5e-68 261.2 213 64.8
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 2.9e-67 259.2 222 63.1
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 4.9e-67 258.5 227 60.8
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 4.9e-67 258.5 222 62.6
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 1.9e-66 256.5 222 62.2
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 3.2e-66 255.8 234 59.4
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 4.1e-66 255.4 242 58.7
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 5.4e-66 255.0 222 62.6
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 9.2e-66 254.2 234 61.1
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 4.6e-65 251.9 221 63.3
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 4.6e-65 251.9 218 61.9
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 8.6e-64 247.7 223 60.5
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 7.3e-63 244.6 215 60.0
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 7.3e-63 244.6 203 65.0
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 2.1e-62 243.0 215 59.5
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 4.7e-62 241.9 228 59.2
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 1.1e-61 240.7 230 59.1
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 1.5e-60 236.9 222 56.8
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 3.4e-60 235.7 226 60.2
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 2.2e-59 233.0 234 56.8
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 1.1e-58 230.7 217 58.1
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 1.1e-58 230.7 229 56.8
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 2.4e-58 229.6 189 63.5
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 9.2e-58 227.6 223 56.5
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 9.2e-58 227.6 190 62.1
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.2e-57 227.3 221 57.5
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 2.7e-57 226.1 226 56.6
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 4.6e-57 225.3 237 53.6
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 5.1e-56 221.9 208 57.2
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 1.5e-55 220.3 208 56.7
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 3.3e-55 219.2 228 55.3
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 5.6e-55 218.4 221 56.1
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 7.3e-55 218.0 227 54.6
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 1.6e-54 216.9 227 53.7
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 1.6e-54 216.9 219 53.4
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 1.6e-54 216.9 213 55.9
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 2.1e-54 216.5 226 52.2
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 2.1e-54 216.5 224 53.1
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 2.1e-54 216.5 223 54.7
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 2.8e-54 216.1 227 53.7
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 4.7e-54 215.3 226 52.2
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 4.7e-54 215.3 223 51.6
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 8.1e-54 214.5 224 54.0
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 1.1e-53 214.2 208 56.2
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 1.4e-53 213.8 226 51.8
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 1.4e-53 213.8 226 51.8
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 1.4e-53 213.8 234 52.1
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.8e-53 213.4 212 55.7
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 2.4e-53 213.0 213 54.0
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 2.4e-53 213.0 187 59.4
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 3.1e-53 212.6 209 54.1
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 3.1e-53 212.6 272 47.8
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 3.1e-53 212.6 217 55.3
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 3.1e-53 212.6 227 54.6
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 4.0e-53 212.2 227 52.9
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 6.8e-53 211.5 227 52.9
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 8.9e-53 211.1 203 55.7
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 1.2e-52 210.7 226 50.0
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 1.2e-52 210.7 225 54.2
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 1.5e-52 210.3 222 53.6
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 2.0e-52 209.9 227 52.9
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 2.6e-52 209.5 234 51.7
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 2.6e-52 209.5 233 51.5
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 5.8e-52 208.4 232 51.3
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 2.9e-51 206.1 233 50.6
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 4.9e-51 205.3 243 49.4
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 1.4e-50 203.8 194 57.7
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 1.9e-50 203.4 233 49.8
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 2.4e-50 203.0 203 51.2
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 7.1e-50 201.4 190 57.4
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 2.7e-49 199.5 215 52.6
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 7.8e-49 198.0 225 48.9
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 1.7e-48 196.8 200 57.0
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 3.0e-48 196.1 209 47.8
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 3.9e-48 195.7 181 58.6
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 8.7e-48 194.5 214 54.2
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 1.5e-47 193.7 223 50.2
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 3.3e-47 192.6 292 43.2
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 2.1e-46 189.9 226 46.9
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 3.6e-46 189.1 221 49.8
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 6.2e-46 188.3 166 62.7
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 6.2e-46 188.3 225 48.4
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 9.0e-45 184.5 153 64.7
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 2.4e-42 176.4 357 36.4
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 4.2e-42 175.6 118 69.5
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 1.6e-41 173.7 250 43.2
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 2.1e-41 173.3 270 44.1
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 6.0e-41 171.8 198 51.0
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 3.0e-40 169.5 201 44.3
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 3.3e-39 166.0 162 59.3
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.1e-38 163.3 245 44.5
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.1e-37 161.0 188 47.9
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 2.4e-37 159.8 152 59.2
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 5.3e-37 158.7 131 63.4
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 1.2e-36 157.5 159 56.0
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 1.1e-31 141.0 131 62.6
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 1.9e-31 140.2 164 53.0
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 1.9e-31 140.2 124 60.5
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 3.7e-30 136.0 171 49.1
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.0e-27 127.9 143 52.4
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 9.3e-26 121.3 162 47.5
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 1.2e-25 120.9 217 39.2
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 2.7e-25 119.8 216 36.1
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.8e-24 117.1 172 44.2
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 5.7e-23 112.1 213 37.1
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 5.9e-20 102.1 204 30.9
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 8.5e-19 98.2 92 59.8
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 1.1e-18 97.8 156 41.7
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 7.2e-18 95.1 104 51.0
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 1.3e-16 90.9 100 51.0
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 1.5e-15 87.4 99 49.5
PRCOL_00004769 Prasinoderma coloniale HOM05D004725 ORTHO05D005683 5.7e-15 85.5 224 28.1
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 1.6e-14 84.0 58 75.9
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 4.8e-14 82.4 156 39.7
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 2.4e-13 80.1 84 57.1
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 1.2e-12 77.8 200 31.0
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 6.5e-11 72.0 88 46.6
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 6.5e-11 72.0 88 46.6
Zm00001eb417800 Zea mays HOM05D004725 ORTHO05D005683 1.4e-10 70.9 45 73.3
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 3.0e-08 63.2 53 62.3
GSVIVG01034926001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.1e-07 61.2 61 57.4
Zm00001eb228430 Zea mays HOM05D004725 ORTHO05D005683 2.6e-07 60.1 83 43.4
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.7e-06 57.4 75 40.0
Lalb_Chr20g0110431 Lupinus albus HOM05D004725 ORTHO05D005683 8.2e-06 55.1 64 50.0


User provided reference genes

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