Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 1.8e-227 792.3 432 100.0
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 2.7e-223 778.5 432 98.1
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 3.2e-176 622.1 434 73.5
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.6e-167 593.2 464 67.0
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 1.0e-161 573.9 434 67.1
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.5e-157 560.1 430 65.3
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 4.4e-157 558.5 437 68.0
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 2.2e-156 556.2 435 66.7
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.9e-155 553.1 434 66.1
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 4.1e-155 552.0 434 65.9
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 5.4e-155 551.6 435 66.2
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 1.6e-154 550.1 440 65.5
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 2.7e-154 549.3 434 64.7
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 3.0e-153 545.8 432 64.8
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 3.9e-153 545.4 434 65.0
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 5.0e-153 545.0 435 66.4
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 1.1e-152 543.9 433 64.4
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 1.1e-152 543.9 434 63.6
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 5.2e-150 535.0 382 79.1
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 2.4e-147 526.2 462 62.3
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 2.1e-146 523.1 408 66.7
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 4.6e-146 521.9 436 62.8
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 7.8e-146 521.2 436 64.0
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.3e-145 520.4 436 62.6
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.7e-145 520.0 433 62.6
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 3.0e-145 519.2 430 62.8
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 3.9e-145 518.8 437 63.4
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 5.1e-145 518.5 432 63.4
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 5.1e-145 518.5 435 61.4
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 6.6e-145 518.1 435 62.8
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 8.6e-145 517.7 430 62.6
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 1.5e-144 516.9 436 62.4
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 1.5e-144 516.9 436 62.6
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 1.9e-144 516.5 436 60.8
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 2.5e-144 516.2 435 63.0
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 3.3e-144 515.8 441 61.7
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 4.3e-144 515.4 430 62.6
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 5.6e-144 515.0 436 62.4
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 7.3e-144 514.6 436 61.7
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 7.3e-144 514.6 436 62.2
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 1.5e-141 506.9 437 60.0
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 1.5e-141 506.9 430 61.2
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 3.4e-141 505.8 435 61.6
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 3.4e-141 505.8 434 62.0
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 4.4e-141 505.4 437 60.0
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 4.4e-141 505.4 430 62.3
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 4.4e-141 505.4 436 60.8
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.7e-140 503.4 433 61.7
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 4.9e-140 501.9 445 60.4
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 1.1e-139 500.7 430 60.0
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 1.4e-139 500.4 436 60.8
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 1.4e-139 500.4 436 60.8
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 3.2e-139 499.2 437 61.3
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 3.2e-139 499.2 430 60.2
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 5.4e-139 498.4 436 60.6
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 9.2e-139 497.7 430 60.2
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 6.0e-138 495.0 430 60.5
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 7.8e-138 494.6 435 60.2
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 1.0e-137 494.2 433 58.9
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 3.3e-136 489.2 437 58.6
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 6.2e-135 485.0 436 58.7
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 8.9e-134 481.1 391 65.2
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 3.4e-133 479.2 391 65.2
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 2.9e-132 476.1 435 57.5
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 1.1e-131 474.2 438 58.7
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 7.1e-131 471.5 367 64.9
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 6.0e-130 468.4 433 58.0
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 6.0e-130 468.4 433 58.0
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 2.3e-129 466.5 447 55.7
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 5.1e-129 465.3 433 55.0
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 5.1e-129 465.3 453 55.8
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 2.5e-128 463.0 452 54.9
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 4.8e-127 458.8 438 57.1
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 5.3e-126 455.3 432 54.6
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.0e-125 453.4 351 66.7
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 2.6e-125 453.0 400 58.0
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 5.8e-125 451.8 417 60.2
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 1.7e-124 450.3 435 57.2
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 1.7e-124 450.3 432 54.2
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 6.4e-124 448.4 440 56.1
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 2.4e-123 446.4 434 53.9
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 9.3e-123 444.5 401 58.9
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 2.1e-122 443.4 388 58.8
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 2.7e-122 443.0 448 52.7
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 6.0e-122 441.8 433 53.8
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 7.8e-122 441.4 450 52.2
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 1.0e-121 441.0 431 53.4
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 3.9e-121 439.1 454 51.8
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 3.9e-121 439.1 443 54.2
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 5.1e-121 438.7 455 51.6
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 8.7e-121 438.0 457 50.5
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 8.7e-121 438.0 431 52.9
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 1.1e-120 437.6 358 65.4
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.4e-118 430.6 432 56.0
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.5e-117 427.2 432 52.1
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 1.3e-116 424.1 453 51.2
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 1.3e-116 424.1 341 62.2
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 2.9e-116 422.9 426 53.8
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 4.9e-116 422.2 432 51.9
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 8.4e-116 421.4 453 50.6
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 1.4e-115 420.6 436 51.8
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 2.4e-115 419.9 438 54.8
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 7.9e-114 414.8 436 51.8
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 1.1e-112 411.0 395 56.2
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 1.1e-112 411.0 395 56.2
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 5.6e-112 408.7 468 51.9
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 5.6e-112 408.7 436 55.0
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 5.6e-112 408.7 342 60.8
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 9.6e-112 407.9 384 56.0
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 5.8e-109 398.7 320 64.7
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.5e-107 393.3 332 60.5
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 5.5e-107 392.1 436 50.7
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 6.0e-106 388.7 345 60.3
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 1.8e-105 387.1 430 50.0
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 4.3e-104 382.5 385 54.8
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 9.6e-104 381.3 349 56.7
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.6e-103 380.6 308 63.3
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 6.5e-100 368.6 422 48.1
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 4.6e-98 362.5 297 63.0
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 3.8e-92 342.8 280 62.1
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 6.1e-90 335.5 280 60.7
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 6.7e-89 332.0 280 61.4
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 1.3e-87 327.8 325 49.5
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 3.7e-87 326.2 280 60.4
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 2.1e-82 310.5 293 54.9
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 6.1e-82 308.9 279 57.7
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 4.8e-79 299.3 278 57.2
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 1.1e-78 298.1 289 57.1
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 1.5e-77 294.3 231 63.6
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 6.7e-73 278.9 293 52.6
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 2.6e-69 266.9 199 66.3
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 3.5e-69 266.5 270 52.2
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 1.9e-67 260.8 439 41.5
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.4e-65 254.6 232 57.8
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 4.4e-64 249.6 344 44.8
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 3.2e-59 233.4 162 67.3
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 6.3e-55 219.2 508 34.6
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 4.2e-51 206.5 305 42.6
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 1.0e-49 201.8 157 70.1
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 4.0e-49 199.9 156 67.9
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.6e-48 197.2 177 60.5
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 2.6e-48 197.2 157 66.9
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 3.4e-48 196.8 156 66.7
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 4.9e-47 193.0 155 66.5
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 7.3e-43 179.1 145 66.9
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 6.8e-41 172.6 141 57.4
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 7.5e-40 169.1 141 64.5
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 1.1e-38 165.2 184 52.2
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 3.9e-36 156.8 133 63.9
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 4.7e-34 149.8 182 47.8
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 3.7e-31 140.2 122 61.5
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 2.7e-29 134.0 132 61.4
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 7.8e-29 132.5 481 26.4
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 1.6e-26 124.8 115 57.4
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 8.4e-23 112.5 63 92.1
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 5.1e-20 103.2 57 93.0
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 1.5e-19 101.7 62 79.0
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 3.3e-19 100.5 56 92.9
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 4.3e-19 100.1 178 39.3
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 3.6e-18 97.1 99 54.5
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 1.4e-17 95.1 57 84.2
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 8.9e-17 92.4 140 40.7
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 3.4e-16 90.5 146 40.4
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 4.8e-10 70.1 215 28.8
Actinidia20627 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.1e-09 68.9 74 51.4
Cc07_g20530 Coffea canephora HOM05D004012 ORTHO05D004752 6.4e-07 59.7 74 47.3
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 3.2e-06 57.4 257 25.7
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 4.2e-06 57.0 69 40.6


User provided reference genes

Program Settings