Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO754G0010 Papaver somniferum HOM05D005949 ORTHO05D006945 3.6e-255 884.4 448 100.0
PSO063G1157 Papaver somniferum HOM05D005949 ORTHO05D006945 3.9e-249 864.4 448 97.5
Aqoxy5G03678 Aquilegia oxysepala HOM05D005949 ORTHO05D006945 3.3e-171 605.5 446 67.3
TAR374G0398 Trochodendron aralioides HOM05D005949 ORTHO05D006945 2.0e-165 586.3 437 68.0
RhsimUnG0006400 Rhododendron simsii HOM05D005949 ORTHO05D006945 7.5e-160 567.8 447 65.3
RhsimUnG0087200 Rhododendron simsii HOM05D005949 ORTHO05D006945 7.5e-160 567.8 447 65.3
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 2.9e-159 565.8 436 65.4
Nitab4.5_0006683g0100 Nicotiana tabacum HOM05D005949 ORTHO05D006945 1.1e-158 563.9 426 66.7
Nitab4.5_0001562g0070 Nicotiana tabacum HOM05D005949 ORTHO05D006945 4.6e-157 558.5 438 64.8
Ciclev10015245m.g Citrus clementina HOM05D005949 ORTHO05D006945 1.9e-155 553.1 437 63.8
MSTRG.15541 Avicennia marina HOM05D005949 ORTHO05D006945 4.3e-155 552.0 449 62.6
Duzib264G1167 Durio zibethinus HOM05D005949 ORTHO05D006945 1.6e-154 550.1 430 64.4
CSS0029670 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 6.8e-153 544.7 434 63.4
CAN.G1235.24 Capsicum annuum HOM05D005949 ORTHO05D006945 2.6e-152 542.7 441 62.6
HanXRQChr15g0486811 Helianthus annuus HOM05D005949 ORTHO05D006945 2.9e-151 539.3 449 60.8
Nn2g12389 Nelumbo nucifera HOM05D005949 ORTHO05D006945 2.7e-149 532.7 438 61.9
PGSC0003DMG400018653 Solanum tuberosum HOM05D005949 ORTHO05D006945 2.7e-149 532.7 437 63.2
Sopen01g054070 Solanum pennellii HOM05D005949 ORTHO05D006945 3.5e-149 532.3 437 62.9
Solyc01g112020.3 Solanum lycopersicum HOM05D005949 ORTHO05D006945 6.6e-148 528.1 437 62.7
SGA_v2.0_scaffold47G17523 Striga asiatica HOM05D005949 ORTHO05D006945 1.5e-147 526.9 446 59.6
Lsat_1_v5_gn_4_184520 Lactuca sativa HOM05D005949 ORTHO05D006945 3.6e-146 522.3 433 61.0
ECA232G4961 Erigeron canadensis HOM05D005949 ORTHO05D006945 5.8e-144 515.0 452 58.2
Peaxi162Scf00420g00016 Petunia axillaris HOM05D005949 ORTHO05D006945 1.6e-141 506.9 439 61.5
Haze_14768 Corylus avellana HOM05D005949 ORTHO05D006945 4.6e-141 505.4 455 58.5
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 6.0e-141 505.0 446 58.7
Lj7C602T3 Lonicera japonica HOM05D005949 ORTHO05D006945 1.0e-140 504.2 460 59.1
FAN09G2334 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.3e-140 503.8 441 59.0
HPP92_016937 Vanilla planifolia HOM05D005949 ORTHO05D006945 5.1e-140 501.9 425 60.5
GSVIVG01032367001 Vitis vinifera HOM05D005949 ORTHO05D006945 1.5e-139 500.4 447 58.6
Cfa007328 Carpinus fangiana HOM05D005949 ORTHO05D006945 3.6e-138 495.7 439 58.3
QL02p073821 Quercus lobata HOM05D005949 ORTHO05D006945 1.2e-136 490.7 447 56.6
EL10Ac6g14123 Beta vulgaris HOM05D005949 ORTHO05D006945 5.8e-136 488.4 499 52.9
ATR0199G040 Amborella trichopoda HOM05D005949 ORTHO05D006945 1.7e-135 486.9 419 58.5
PGR083G1217 Punica granatum HOM05D005949 ORTHO05D006945 2.9e-135 486.1 440 57.5
Phvul.004G060400 Phaseolus vulgaris HOM05D005949 ORTHO05D006945 3.2e-134 482.6 449 55.5
Eucgr.J02262 Eucalyptus grandis HOM05D005949 ORTHO05D006945 2.7e-133 479.6 423 58.4
Ca_04380_v3 Cicer arietinum L. HOM05D005949 ORTHO05D006945 3.5e-133 479.2 448 56.2
CANSAT64G2213 Cannabis sativa HOM05D005949 ORTHO05D006945 7.8e-133 478.0 442 57.0
ClCG10G013730 Citrullus lanatus HOM05D005949 ORTHO05D006945 1.7e-132 476.9 438 57.1
Thecc.04G021200 Theobroma cacao HOM05D005949 ORTHO05D006945 2.3e-132 476.5 444 56.1
Gorai.011G094000 Gossypium raimondii HOM05D005949 ORTHO05D006945 3.0e-132 476.1 438 56.4
BcaNung00787 Brassica carinata HOM05D005949 ORTHO05D006945 3.9e-132 475.7 439 56.7
Gohir.D10G085800 Gossypium hirsutum HOM05D005949 ORTHO05D006945 1.5e-131 473.8 424 57.8
Glyma.05G115200 Glycine max HOM05D005949 ORTHO05D006945 2.5e-131 473.0 441 54.9
Medtr6g021740 Medicago truncatula HOM05D005949 ORTHO05D006945 4.3e-131 472.2 445 55.1
Ah.02g128260 Amaranthus hybridus HOM05D005949 ORTHO05D006945 7.3e-131 471.5 452 55.1
Gohir.A10G101600 Gossypium hirsutum HOM05D005949 ORTHO05D006945 3.6e-130 469.2 438 55.7
Sed0011104 Sechium edule HOM05D005949 ORTHO05D006945 2.0e-128 463.4 439 56.0
Glyma.19G052100 Glycine max HOM05D005949 ORTHO05D006945 5.8e-128 461.8 442 54.8
AUR62043287 Chenopodium quinoa HOM05D005949 ORTHO05D006945 1.3e-127 460.7 416 59.1
TWI12G1469 Tripterygium wilfordii HOM05D005949 ORTHO05D006945 1.3e-127 460.7 440 55.5
Lalb_Chr06g0174481 Lupinus albus HOM05D005949 ORTHO05D006945 3.2e-126 456.1 441 54.0
Migut.K01417 Erythranthe guttata HOM05D005949 ORTHO05D006945 5.4e-126 455.3 438 54.1
TPR.G8694 Trifolium pratense HOM05D005949 ORTHO05D006945 7.1e-126 454.9 439 54.0
TPR.G16864 Trifolium pratense HOM05D005949 ORTHO05D006945 3.5e-125 452.6 445 53.9
CiPaw.03G046600 Carya illinoinensis HOM05D005949 ORTHO05D006945 3.9e-124 449.1 445 53.9
RcHm_v2.0_Chr2g0173461 Rosa chinensis HOM05D005949 ORTHO05D006945 3.1e-121 439.5 444 52.9
DCAR_021740 Daucus carota HOM05D005949 ORTHO05D006945 1.2e-120 437.6 443 53.0
AUR62028447 Chenopodium quinoa HOM05D005949 ORTHO05D006945 2.6e-120 436.4 351 62.1
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 3.4e-120 436.0 427 52.0
arahy.Tifrunner.gnm1.ann1.4A4JE9 Arachis hypogaea HOM05D005949 ORTHO05D006945 4.5e-120 435.6 438 53.0
Atru.chr6.2442 Acer truncatum HOM05D005949 ORTHO05D006945 9.9e-120 434.5 350 63.4
Os05g0145600 Oryza sativa ssp. japonica HOM05D005949 ORTHO05D006945 1.3e-119 434.1 427 51.1
THA.LOC104819734 Tarenaya hassleriana HOM05D005949 ORTHO05D006945 2.2e-119 433.3 435 52.6
Lj2g0004695 Lotus japonicus HOM05D005949 ORTHO05D006945 4.2e-118 429.1 450 52.0
A01p02870 Brassica napus HOM05D005949 ORTHO05D006945 9.3e-118 427.9 434 51.6
BolC1t00304H Brassica oleracea HOM05D005949 ORTHO05D006945 9.3e-118 427.9 439 52.2
BraA01t00268Z Brassica rapa HOM05D005949 ORTHO05D006945 1.6e-117 427.2 439 52.2
AL7G15220 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 2.7e-117 426.4 445 52.1
C01p03190 Brassica napus HOM05D005949 ORTHO05D006945 6.0e-117 425.2 440 50.7
Carub.0007s0438 Capsella rubella HOM05D005949 ORTHO05D006945 3.9e-116 422.5 445 51.5
AT4G35850 Arabidopsis thaliana HOM05D005949 ORTHO05D006945 6.7e-116 421.8 446 50.9
FAN05G2654 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.5e-115 420.6 441 51.2
arahy.Tifrunner.gnm1.ann1.BK7H4N Arachis hypogaea HOM05D005949 ORTHO05D006945 3.3e-115 419.5 457 50.3
Thhalv10025194m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 7.4e-115 418.3 446 51.3
Sc09g0007150 Simmondsia chinensis HOM05D005949 ORTHO05D006945 9.6e-115 417.9 372 59.9
FvH4_6g51990 Fragaria vesca HOM05D005949 ORTHO05D006945 1.6e-114 417.2 442 50.5
Prupe.3G295200 Prunus persica HOM05D005949 ORTHO05D006945 2.1e-114 416.8 447 50.6
MD09G1021300 Malus domestica HOM05D005949 ORTHO05D006945 1.1e-113 414.5 441 49.9
CARHR244220 Cardamine hirsuta HOM05D005949 ORTHO05D006945 3.1e-113 412.9 445 51.0
Aa31LG6G12800 Aethionema arabicum HOM05D005949 ORTHO05D006945 4.0e-113 412.5 446 51.3
FAN14G1023 Fragaria x ananassa HOM05D005949 ORTHO05D006945 4.0e-113 412.5 441 50.6
Zm00001eb354320 Zea mays HOM05D005949 ORTHO05D006945 9.0e-113 411.4 413 51.3
MD17G1021300 Malus domestica HOM05D005949 ORTHO05D006945 2.0e-112 410.2 445 49.7
BcaNung04881 Brassica carinata HOM05D005949 ORTHO05D006945 1.3e-111 407.5 440 49.3
FAN02G3213 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.1e-110 404.4 441 49.7
Cc09_g05780 Coffea canephora HOM05D005949 ORTHO05D006945 5.1e-108 395.6 445 49.7
Potri.001G341400 Populus trichocarpa HOM05D005949 ORTHO05D006945 1.1e-107 394.4 431 49.0
Sabra16G0221400 Salix brachista HOM05D005949 ORTHO05D006945 3.3e-107 392.9 427 49.2
SEGI_30195 Sequoiadendron giganteum HOM05D005949 ORTHO05D006945 2.2e-106 390.2 413 49.4
MELO3C026595.2 Cucumis melo HOM05D005949 ORTHO05D006945 3.7e-106 389.4 371 55.3
CsaV3_3G042930 Cucumis sativus L. HOM05D000631 ORTHO05D000524 3.4e-104 382.9 415 50.6
vmacro05885 Vaccinium macrocarpon HOM05D005949 ORTHO05D006945 1.4e-102 377.5 324 63.3
Psat5g064960 Pisum sativum HOM05D005949 ORTHO05D006945 3.6e-101 372.9 326 59.2
Dinv25719 Davidia involucrata HOM05D005949 ORTHO05D006945 5.1e-100 369.0 334 59.3
Thhalv10023015m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 1.5e-96 357.5 435 45.7
unitig_88.g27782 Utricularia gibba HOM05D005949 ORTHO05D006945 7.7e-96 355.1 311 59.2
Duzib147G0933 Durio zibethinus HOM05D005949 ORTHO05D006945 1.6e-85 320.9 326 52.8
Actinidia36133 Actinidia chinensis HOM05D005949 ORTHO05D006945 7.2e-78 295.4 307 53.4
CDE04G3569 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 1.5e-75 287.7 336 46.4
SHI03792 Sapria himalayana HOM05D005949 ORTHO05D006945 5.7e-75 285.8 253 58.1
CSS0002019 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 6.5e-71 272.3 278 52.9
Mapoly0062s0069 Marchantia polymorpha HOM05D005949 ORTHO05D006945 7.5e-67 258.8 394 36.3
Cpa.g.sc130.71 Carica papaya HOM05D005949 ORTHO05D006945 1.3e-66 258.1 260 53.1
Pp3c1_21850 Physcomitrium patens HOM05D005949 ORTHO05D006945 6.8e-60 235.7 450 33.8
Psat1g081720 Pisum sativum HOM05D005949 ORTHO05D006945 2.0e-56 224.2 258 48.1
MBI10_g15883_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 6.6e-55 219.2 206 61.2
SMO201G0168 Selaginella moellendorffii HOM05D005949 ORTHO05D006945 7.3e-54 215.7 396 31.6
Pp3c14_7210 Physcomitrium patens HOM05D005949 ORTHO05D006945 3.6e-53 213.4 430 31.9
AagrBONN_evm.TU.Sc2ySwM_117.2156 Anthoceros agrestis HOM05D005949 ORTHO05D006945 4.0e-52 209.9 401 32.2
MBI10_g37260_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 1.3e-50 204.9 212 54.2
CBR_g20410 Chara braunii HOM05D005949 ORTHO05D006945 1.9e-49 201.1 421 29.9
CBR_g20407 Chara braunii HOM05D005949 ORTHO05D006945 3.5e-48 196.8 398 29.4
SHI03793 Sapria himalayana HOM05D005949 ORTHO05D006945 7.3e-46 189.1 145 62.1
CSS0020931 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 1.7e-42 177.9 161 57.1
AL7G15200 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 1.1e-41 175.3 229 44.5
Actinidia36134 Actinidia chinensis HOM05D005949 ORTHO05D006945 9.5e-38 162.2 109 68.8
Sc07g0004380 Simmondsia chinensis HOM05D005949 ORTHO05D006945 1.2e-37 161.8 158 56.3
CAN.G479.6 Capsicum annuum HOM05D005949 ORTHO05D006945 1.1e-33 148.7 222 41.0
Psat1g081680 Pisum sativum HOM05D005949 ORTHO05D006945 1.1e-30 138.7 98 65.3
Zm00001eb120940 Zea mays HOM05D005949 ORTHO05D006945 1.9e-30 137.9 130 53.1
MD09G1021100 Malus domestica HOM05D005949 ORTHO05D006945 5.6e-30 136.3 114 56.1
Hma1.2p1_0818F.1_g223360 Hydrangea macrophylla HOM05D005949 ORTHO05D006945 3.1e-28 130.6 98 62.2
CAN.G370.99 Capsicum annuum HOM05D000140 ORTHO05D000087 1.6e-24 118.2 128 53.1
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 1.3e-23 115.2 191 39.8
CAN.G1258.5 Capsicum annuum HOM05D005949 ORTHO05D006945 3.3e-22 110.5 94 57.4
Sp7g33630 Schrenkiella parvula HOM05D005949 ORTHO05D006945 2.2e-18 97.8 110 53.6
Cpa.g.sc130.69 Carica papaya HOM05D005949 ORTHO05D006945 1.9e-14 84.7 58 69.0
CDE04G3731 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 1.9e-14 84.7 65 61.5
CAN.G153.13 Capsicum annuum HOM05D001265 ORTHO05D006945 4.5e-11 73.6 55 60.0
Sc07g0004370 Simmondsia chinensis HOM05D005949 ORTHO05D006945 2.2e-10 71.2 64 56.2
Thecc.07G052500 Theobroma cacao HOM05D003177 ORTHO05D003481 4.9e-10 70.1 133 27.1
CAN.G15.16 Capsicum annuum HOM05D005949 ORTHO05D006945 1.2e-08 65.5 56 64.3
Aqoxy7G03087 Aquilegia oxysepala HOM05D007251 ORTHO05D009266 4.6e-08 63.5 144 31.9
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 4.6e-08 63.5 159 22.6
BcaNung04765 Brassica carinata HOM05D007322 ORTHO05D009029 1.0e-07 62.4 116 31.0
SMO144G0203 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 1.3e-07 62.0 129 27.1
SMO229G0016 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 1.3e-07 62.0 160 26.2
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 1.8e-07 61.6 116 30.2
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 2.3e-07 61.2 116 29.3
BcaC07g39395 Brassica carinata HOM05D006156 ORTHO05D007699 3.0e-07 60.8 154 26.0
CiPaw.05G196700 Carya illinoinensis HOM05D006156 ORTHO05D007699 3.9e-07 60.5 129 27.9
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 5.1e-07 60.1 116 30.2
Sc14g0005840 Simmondsia chinensis HOM05D005973 ORTHO05D007285 5.1e-07 60.1 139 24.5
Ciclev10010464m.g Citrus clementina HOM05D006740 ORTHO05D008571 6.7e-07 59.7 198 24.7
FvH4_3g21820 Fragaria vesca HOM05D003177 ORTHO05D003481 6.7e-07 59.7 405 22.2
Cpa.g.sc97.68 Carica papaya HOM05D003177 ORTHO05D003481 8.7e-07 59.3 224 23.7
PGR102G0298 Punica granatum HOM05D000001 ORTHO05D009485 1.1e-06 58.9 163 23.3
Sed0022984 Sechium edule HOM05D000001 ORTHO05D000003 1.5e-06 58.5 127 29.1
SMO340G0285 Selaginella moellendorffii HOM05D002785 ORTHO05D000003 1.9e-06 58.2 116 32.8
HPP92_004136 Vanilla planifolia HOM05D003177 ORTHO05D003481 1.9e-06 58.2 155 22.6
SalBow2G0039 Salvia bowleyana HOM05D000001 ORTHO05D000003 2.5e-06 57.8 125 24.8
Carub.0007s1949 Capsella rubella HOM05D003177 ORTHO05D003481 3.3e-06 57.4 152 25.7
Aa31LG10G8340 Aethionema arabicum HOM05D001779 ORTHO05D001753 4.3e-06 57.0 141 25.5
MD00G1221000 Malus domestica HOM05D002244 ORTHO05D002269 4.3e-06 57.0 110 30.0
Nn8g39664 Nelumbo nucifera HOM05D000001 ORTHO05D000003 4.3e-06 57.0 127 26.8
Thhalv10011131m.g Eutrema salsugineum HOM05D001779 ORTHO05D001753 5.6e-06 56.6 111 30.6
FAN11G2546 Fragaria x ananassa HOM05D003177 ORTHO05D003481 5.6e-06 56.6 128 25.8
FAN25G3665 Fragaria x ananassa HOM05D003177 ORTHO05D003481 5.6e-06 56.6 387 20.7
Pp3c17_2130 Physcomitrium patens HOM05D004127 ORTHO05D023528 5.6e-06 56.6 123 23.6
Pp3c17_23250 Physcomitrium patens HOM05D000001 ORTHO05D000003 5.6e-06 56.6 168 22.0
vmacro08004 Vaccinium macrocarpon HOM05D001779 ORTHO05D001753 5.6e-06 56.6 110 27.3
AagrBONN_evm.TU.Sc2ySwM_228.1594 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.4e-06 56.2 251 26.3
MBI07_g20478_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001968 7.4e-06 56.2 52 65.4
TAR623G1644 Trochodendron aralioides HOM05D005973 ORTHO05D007285 9.6e-06 55.8 140 25.7


User provided reference genes

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