Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 1.0e-286 989.6 568 100.0
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 1.5e-269 932.6 568 94.5
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 9.8e-181 637.5 459 69.3
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 5.6e-176 621.7 459 67.5
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.4e-174 617.1 461 66.6
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 4.0e-174 615.5 457 66.5
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 8.9e-174 614.4 462 66.7
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 7.5e-173 611.3 464 65.5
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 2.2e-172 609.8 458 65.1
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 1.9e-171 606.7 456 65.1
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 3.2e-171 605.9 458 65.1
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 1.6e-170 603.6 453 64.5
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 2.1e-170 603.2 459 66.0
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 3.5e-170 602.4 455 64.6
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 7.8e-170 601.3 459 64.3
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.7e-169 600.1 459 64.3
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 3.0e-169 599.4 459 64.5
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 1.9e-168 596.7 406 71.9
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 2.8e-167 592.8 458 64.0
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 3.6e-167 592.4 449 65.0
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 4.7e-167 592.0 458 64.6
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 6.2e-167 591.7 460 63.7
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 6.2e-167 591.7 474 62.4
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.8e-166 590.1 460 63.5
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 4.0e-166 589.0 459 63.0
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 4.0e-166 589.0 458 64.6
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 2.6e-165 586.3 469 61.6
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.9e-163 580.1 450 64.7
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 5.4e-163 578.6 462 61.5
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 8.6e-161 571.2 466 59.9
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 8.6e-161 571.2 413 69.7
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 8.6e-161 571.2 460 61.1
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 2.5e-160 569.7 458 62.4
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 3.3e-160 569.3 461 61.4
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 4.3e-160 568.9 461 61.2
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 7.3e-160 568.2 462 61.7
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 1.2e-159 567.4 459 61.7
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 1.6e-159 567.0 452 63.7
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 2.1e-159 566.6 455 62.6
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 2.8e-159 566.2 459 61.4
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 4.7e-159 565.5 448 63.2
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 1.1e-158 564.3 456 63.8
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 1.8e-158 563.5 452 62.6
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 4.0e-158 562.4 400 68.0
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.5e-157 560.5 416 66.1
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.0e-157 560.1 454 60.1
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 2.0e-157 560.1 454 61.0
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 2.6e-157 559.7 454 60.4
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.7e-156 557.0 401 68.8
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 8.4e-156 554.7 463 60.3
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 3.2e-155 552.7 459 61.2
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 5.4e-155 552.0 461 59.9
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 5.4e-155 552.0 463 59.6
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 5.4e-155 552.0 463 59.6
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 7.1e-155 551.6 454 59.9
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 1.6e-154 550.4 526 55.1
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 2.7e-154 549.7 457 58.6
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 7.8e-154 548.1 462 58.7
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 2.3e-153 546.6 436 61.7
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.8e-151 539.7 472 58.5
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 2.8e-151 539.7 453 58.5
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 6.2e-151 538.5 449 60.4
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 1.4e-150 537.3 406 64.3
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 1.8e-150 537.0 452 59.7
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 1.8e-150 537.0 458 59.8
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 6.9e-150 535.0 462 58.0
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 6.9e-150 535.0 457 60.2
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 6.9e-150 535.0 462 58.7
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 6.9e-150 535.0 460 59.1
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 9.0e-150 534.6 405 65.7
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 1.2e-149 534.3 460 57.8
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 4.4e-149 532.3 400 65.0
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 2.2e-148 530.0 451 59.0
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 2.9e-148 529.6 408 63.0
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 3.8e-148 529.3 454 59.3
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 7.8e-146 521.5 469 56.9
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 1.7e-145 520.4 461 57.0
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 3.9e-145 519.2 425 60.2
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 8.7e-145 518.1 464 57.8
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 5.6e-144 515.4 462 57.8
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 7.3e-144 515.0 426 59.6
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 7.3e-144 515.0 455 57.1
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.3e-143 514.2 408 63.5
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 2.8e-143 513.1 446 58.3
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 8.1e-143 511.5 498 53.6
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 1.1e-142 511.1 401 62.3
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 6.9e-142 508.4 459 58.4
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 6.9e-142 508.4 405 61.5
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 9.0e-142 508.1 405 61.5
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 9.0e-142 508.1 409 62.6
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.2e-141 507.7 409 62.6
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 2.0e-141 506.9 473 57.1
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 2.0e-141 506.9 402 61.7
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 3.4e-141 506.1 405 62.2
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 9.9e-141 504.6 487 54.4
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 1.3e-140 504.2 446 58.1
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 1.3e-140 504.2 488 54.3
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 2.9e-140 503.1 446 58.1
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 2.9e-140 503.1 446 58.1
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 4.9e-140 502.3 370 64.3
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 4.9e-140 502.3 485 54.6
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 4.9e-140 502.3 485 54.6
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 6.4e-140 501.9 396 61.9
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 8.4e-140 501.5 714 41.7
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 1.1e-139 501.1 407 61.4
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 5.4e-139 498.8 464 57.1
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 5.4e-139 498.8 531 50.5
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 9.3e-139 498.0 386 63.5
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 2.1e-138 496.9 512 53.5
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 4.6e-138 495.7 450 56.2
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 7.9e-138 495.0 463 55.9
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 1.8e-137 493.8 416 60.1
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 3.0e-137 493.0 411 61.1
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 5.1e-137 492.3 433 57.3
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 5.1e-137 492.3 433 57.3
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 5.1e-137 492.3 433 57.3
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 5.1e-137 492.3 411 62.5
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 8.7e-137 491.5 468 56.6
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 1.9e-136 490.3 415 61.2
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 1.6e-135 487.3 450 55.8
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 2.8e-135 486.5 456 55.5
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.8e-135 486.5 415 60.5
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 3.7e-135 486.1 416 59.6
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 3.7e-135 486.1 456 55.5
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 4.8e-135 485.7 405 61.0
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.4e-134 484.2 434 57.1
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.4e-134 483.4 405 60.2
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 3.1e-134 483.0 415 60.0
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 4.0e-134 482.6 415 60.2
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 6.9e-134 481.9 446 57.2
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 1.5e-133 480.7 452 56.2
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.0e-133 480.3 394 61.9
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 2.6e-133 479.9 441 56.7
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 3.4e-133 479.6 401 58.1
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 4.5e-133 479.2 387 60.5
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 1.4e-131 474.2 404 59.7
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 3.7e-127 459.5 320 70.6
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 7.6e-125 451.8 336 67.0
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 1.7e-124 450.7 597 44.7
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.7e-124 450.7 401 54.6
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 2.5e-123 446.8 343 64.4
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 6.0e-122 442.2 414 52.9
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 1.9e-120 437.2 345 62.3
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 7.4e-120 435.3 397 55.7
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 5.0e-116 422.5 301 67.1
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 1.2e-109 401.4 377 55.2
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 3.2e-83 313.5 259 61.0
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 2.1e-82 310.8 202 72.3
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.7e-79 301.2 219 63.9
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 1.5e-72 278.1 219 62.1
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 7.5e-72 275.8 235 59.6
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.1e-70 271.9 250 56.0
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 9.2e-70 268.9 242 56.2
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.9e-68 263.8 217 59.4
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 1.8e-65 254.6 313 44.7
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.2e-50 205.3 420 36.9
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 1.2e-50 205.3 472 32.2
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 3.6e-50 203.8 312 38.8
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 1.4e-38 165.2 267 42.3
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 1.2e-32 145.6 174 48.9
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.2e-32 145.6 185 45.4
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 2.1e-29 134.8 288 31.9
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 3.5e-29 134.0 657 23.6
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 6.2e-26 123.2 117 50.4
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 6.9e-25 119.8 118 51.7
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.5e-24 118.6 79 67.1
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 7.1e-22 109.8 126 50.0
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.1e-17 95.9 109 45.9
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.2e-16 92.4 105 51.4
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 3.0e-12 77.8 53 60.4
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 3.9e-12 77.4 408 24.8
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 6.9e-09 66.6 47 59.6
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 1.0e-07 62.8 204 28.9
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 6.5e-07 60.1 66 48.5


User provided reference genes

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