Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 0.0e+00 1902.9 964 100.0
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 0.0e+00 1728.8 988 90.7
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 2.8e-297 1025.4 931 59.0
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 1.1e-288 996.9 952 57.6
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 4.3e-285 984.9 987 55.5
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 4.0e-283 978.4 946 56.3
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 5.2e-283 978.0 1016 53.7
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 3.0e-278 962.2 978 55.2
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 4.4e-274 948.3 991 53.8
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 9.8e-274 947.2 995 53.8
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 2.9e-273 945.7 959 55.6
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 6.2e-268 927.9 936 56.2
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 2.6e-266 922.5 997 52.1
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 1.3e-265 920.2 959 53.5
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 3.7e-265 918.7 977 53.3
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 9.2e-264 914.1 983 53.4
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 1.2e-263 913.7 961 52.8
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 7.8e-263 911.0 976 53.6
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 2.1e-260 902.9 956 53.7
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 1.4e-259 900.2 1000 51.9
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 5.2e-259 898.3 889 54.2
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 6.8e-259 897.9 997 51.2
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 3.4e-258 895.6 953 53.1
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 3.4e-258 895.6 945 52.9
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 4.4e-258 895.2 971 51.9
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 9.9e-258 894.0 990 51.1
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 1.7e-257 893.3 960 51.8
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 8.4e-257 891.0 971 51.7
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.1e-256 890.6 997 51.6
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 4.1e-256 888.6 976 51.7
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 5.4e-256 888.3 995 51.0
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 3.5e-255 885.6 972 53.4
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 2.3e-254 882.9 995 51.1
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 3.0e-254 882.5 986 51.6
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 6.2e-252 874.8 952 51.5
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 1.8e-251 873.2 987 51.1
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 3.1e-251 872.5 996 50.8
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 4.0e-251 872.1 1004 50.8
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 4.4e-250 868.6 966 52.1
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 1.3e-249 867.1 975 51.3
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 1.3e-249 867.1 954 52.1
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 3.8e-249 865.5 940 51.7
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 1.1e-248 864.0 984 50.9
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 2.4e-248 862.8 955 52.7
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 5.4e-248 861.7 1001 50.8
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 2.3e-246 856.3 999 51.1
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 5.1e-246 855.1 955 53.0
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 6.6e-246 854.7 999 50.3
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 1.1e-245 854.0 976 51.5
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 5.6e-245 851.7 884 53.8
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 9.6e-245 850.9 989 50.5
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 2.8e-244 849.4 966 50.3
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 1.1e-243 847.4 961 50.4
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 1.8e-243 846.7 1004 50.3
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 3.1e-243 845.9 982 50.2
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 4.0e-243 845.5 930 52.5
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 2.6e-242 842.8 989 50.3
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 2.6e-242 842.8 989 50.3
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 5.8e-242 841.6 1004 49.5
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 1.3e-241 840.5 982 50.2
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 1.7e-241 840.1 993 50.4
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 1.7e-241 840.1 987 50.5
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 1.6e-239 833.6 946 51.5
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 2.7e-239 832.8 970 49.6
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 3.5e-239 832.4 965 49.8
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.3e-238 829.7 970 49.8
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 3.9e-238 828.9 963 51.2
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 4.3e-237 825.5 914 51.2
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 5.6e-237 825.1 967 49.9
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 9.6e-237 824.3 682 62.5
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 4.8e-236 822.0 1028 47.9
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 2.4e-235 819.7 967 49.8
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 2.4e-235 819.7 971 49.9
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 9.0e-235 817.8 955 49.1
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 3.4e-234 815.8 958 49.3
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 3.4e-234 815.8 969 48.4
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 4.5e-234 815.5 838 54.5
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 1.7e-233 813.5 970 50.3
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 3.8e-233 812.4 951 49.3
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 4.9e-233 812.0 988 48.8
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 6.4e-233 811.6 971 48.8
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 8.4e-233 811.2 1008 49.1
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 7.1e-232 808.1 694 61.0
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 7.9e-231 804.7 959 48.4
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 1.5e-229 800.4 949 49.7
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 4.3e-229 798.9 848 53.4
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 4.8e-228 795.4 952 48.1
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 4.8e-228 795.4 964 48.1
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 3.1e-227 792.7 664 60.5
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 4.5e-226 788.9 963 48.0
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 1.9e-224 783.5 966 49.3
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 9.3e-224 781.2 958 47.7
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 1.6e-223 780.4 936 49.0
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 4.6e-223 778.9 982 47.1
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 5.1e-222 775.4 990 47.1
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 9.0e-219 764.6 682 58.2
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 1.5e-218 763.8 978 46.8
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 6.7e-214 748.4 940 47.6
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 2.2e-212 743.4 978 46.5
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 8.2e-212 741.5 704 57.1
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 2.9e-209 733.0 798 52.1
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 8.8e-206 721.5 957 44.6
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 6.9e-203 711.8 602 62.6
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 1.4e-200 704.1 958 44.4
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 1.9e-200 703.7 700 52.3
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 7.2e-200 701.8 928 47.3
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 3.6e-199 699.5 751 51.4
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 2.3e-182 643.7 733 49.1
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.4e-179 633.6 739 51.0
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 2.0e-178 630.6 761 46.8
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 6.8e-174 615.5 424 73.1
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 1.4e-171 607.8 828 45.9
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 2.7e-170 603.6 465 67.3
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 1.2e-157 561.6 854 42.3
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 5.6e-152 542.7 616 46.1
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 9.5e-152 542.0 1002 37.5
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 2.3e-150 537.3 964 37.2
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.4e-141 506.9 708 45.1
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 2.1e-138 497.7 533 50.5
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 2.3e-137 494.2 711 43.3
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 1.7e-129 468.0 542 51.7
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 2.3e-129 467.6 741 40.8
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 4.5e-125 453.4 692 40.3
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 1.5e-117 428.3 685 37.7
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 9.7e-104 382.5 575 40.9
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 5.0e-100 370.2 515 43.5
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 2.9e-92 344.4 284 62.3
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 3.8e-92 344.0 275 66.5
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 1.4e-83 315.5 434 44.0
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.8e-78 298.5 192 74.5
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 3.7e-71 274.2 224 62.5
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 3.8e-68 264.2 234 58.5
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.7e-66 258.1 181 69.6
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 2.7e-61 241.5 245 56.3
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 2.5e-59 235.0 230 52.6
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 1.9e-51 208.8 133 71.4
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 3.3e-51 208.0 173 63.6
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.2e-50 206.1 132 75.0
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 3.5e-45 188.0 280 43.2
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 1.3e-44 186.0 181 53.6
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 3.1e-41 174.9 114 68.4
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 8.3e-39 166.8 318 37.1
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 3.6e-34 151.4 537 27.0
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 3.5e-29 134.8 78 83.3
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 2.9e-23 115.2 200 40.5
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 6.2e-18 97.4 543 22.3
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 8.4e-15 87.0 344 27.9
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 5.4e-14 84.3 314 29.9
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 6.6e-12 77.4 47 76.6
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 1.3e-10 73.2 80 45.0
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 3.8e-07 61.6 47 53.2
PSO832G3940 Papaver somniferum HOM05D003912 ORTHO05D004409 3.2e-06 58.5 74 48.6


User provided reference genes

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