Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G9104 Papaver somniferum HOM05D003586 ORTHO05D004036 0.0e+00 4075.8 2154 100.0
PSO732G0142 Papaver somniferum HOM05D003586 ORTHO05D004036 0.0e+00 3875.9 2154 95.0
TAR375G0563 Trochodendron aralioides HOM05D003586 ORTHO05D004036 0.0e+00 2463.7 2176 60.1
Nn1g00886 Nelumbo nucifera HOM05D003586 ORTHO05D004036 0.0e+00 2308.9 2185 57.3
Aqoxy7G00839 Aquilegia oxysepala HOM05D003586 ORTHO05D004036 0.0e+00 2266.1 2175 56.6
Dinv06595 Davidia involucrata HOM05D003586 ORTHO05D004036 0.0e+00 2179.1 2184 54.5
Cfa013573 Carpinus fangiana HOM05D003586 ORTHO05D004036 0.0e+00 2166.7 2180 54.2
GSVIVG01013976001 Vitis vinifera HOM05D003586 ORTHO05D004036 0.0e+00 2149.4 2201 53.2
CSS0040773 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 0.0e+00 2143.2 2186 53.7
QL09p028029 Quercus lobata HOM05D003586 ORTHO05D004036 0.0e+00 2123.2 2225 52.2
Ciclev10004122m.g Citrus clementina HOM05D003586 ORTHO05D004036 0.0e+00 2110.5 2181 53.0
vmacro06834 Vaccinium macrocarpon HOM05D003586 ORTHO05D004036 0.0e+00 2103.2 2203 52.1
CSS0004894 Camellia sinensis var. sinensis HOM05D003586 ORTHO05D004036 0.0e+00 2079.7 2186 52.8
Prupe.2G273000 Prunus persica HOM05D003586 ORTHO05D004036 0.0e+00 2079.3 2182 52.6
Potri.003G151500 Populus trichocarpa HOM05D003586 ORTHO05D004036 0.0e+00 2073.9 2173 51.3
Thecc.03G149300 Theobroma cacao HOM05D003586 ORTHO05D004036 0.0e+00 2056.6 2197 51.8
Haze_22192 Corylus avellana HOM05D003586 ORTHO05D004036 0.0e+00 2050.0 2219 51.9
MD07G1249300 Malus domestica HOM05D003586 ORTHO05D004036 0.0e+00 2043.9 2182 52.1
Manes.14G038400 Manihot esculenta HOM05D003586 ORTHO05D004036 0.0e+00 2041.9 2171 51.4
Rhsim03G0161600 Rhododendron simsii HOM05D003586 ORTHO05D004036 0.0e+00 2028.8 2276 50.0
TWI23G0434 Tripterygium wilfordii HOM05D003586 ORTHO05D004036 0.0e+00 2024.6 2179 50.1
DCAR_027698 Daucus carota HOM05D003586 ORTHO05D004036 0.0e+00 2008.4 2193 50.5
Gorai.001G050900 Gossypium raimondii HOM05D003586 ORTHO05D004036 0.0e+00 1996.1 2196 49.8
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 0.0e+00 1993.8 2225 50.0
Gohir.D07G047701 Gossypium hirsutum HOM05D003586 ORTHO05D004036 0.0e+00 1989.5 2196 49.7
Lsat_1_v5_gn_8_9561 Lactuca sativa HOM05D003586 ORTHO05D004036 0.0e+00 1958.3 2173 49.5
Sabra03G0109700 Salix brachista HOM05D003586 ORTHO05D004036 0.0e+00 1954.5 2301 47.6
FvH4_7g26990 Fragaria vesca HOM05D003586 ORTHO05D004036 0.0e+00 1949.1 2167 50.2
LjContig00272g0012466 Lotus japonicus HOM05D003586 ORTHO05D004036 0.0e+00 1928.3 2179 49.3
FAN03G1177 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1927.1 2185 49.4
Gohir.A07G043301 Gossypium hirsutum HOM05D003586 ORTHO05D004036 0.0e+00 1924.8 2196 49.1
Oeu060859.1 Olea europaea HOM05D003586 ORTHO05D004036 0.0e+00 1923.7 2179 48.1
Lalb_Chr04g0248471 Lupinus albus HOM05D003586 ORTHO05D004036 0.0e+00 1922.1 2176 49.1
FAN06G2502 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1920.2 2198 49.5
FAN10G2285 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1919.8 2199 49.1
PGR042G0622 Punica granatum HOM05D003586 ORTHO05D004036 0.0e+00 1906.0 2184 48.5
FAN01G1639 Fragaria x ananassa HOM05D003586 ORTHO05D004036 0.0e+00 1905.6 2199 48.9
Ca_26483_v3 Cicer arietinum L. HOM05D003586 ORTHO05D004036 0.0e+00 1902.1 2170 48.5
Psat2g013320 Pisum sativum HOM05D003586 ORTHO05D004036 0.0e+00 1901.7 2171 48.3
Glyma.02G290200 Glycine max HOM05D003586 ORTHO05D004036 0.0e+00 1895.9 2182 48.5
CsaV3_4G004170 Cucumis sativus L. HOM05D003586 ORTHO05D004036 0.0e+00 1889.0 2177 48.1
HanXRQChr05g0139491 Helianthus annuus HOM05D003586 ORTHO05D004036 0.0e+00 1887.1 2177 48.5
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 0.0e+00 1875.1 2159 48.5
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 0.0e+00 1873.6 2181 48.3
Phvul.008G266400 Phaseolus vulgaris HOM05D003586 ORTHO05D004036 0.0e+00 1873.6 2180 47.2
Glyma.14G024600 Glycine max HOM05D003586 ORTHO05D004036 0.0e+00 1868.6 2180 48.1
AUR62025663 Chenopodium quinoa HOM05D003586 ORTHO05D004036 0.0e+00 1867.8 2175 46.7
EL10Ac7g18161 Beta vulgaris HOM05D003586 ORTHO05D004036 0.0e+00 1865.5 2174 47.7
Hund18595 Selenicereus undatus HOM05D003586 ORTHO05D004036 0.0e+00 1864.7 2174 47.5
Sed0010855 Sechium edule HOM05D003586 ORTHO05D004036 0.0e+00 1860.9 2174 47.6
arahy.Tifrunner.gnm1.ann1.DI5547 Arachis hypogaea HOM05D003586 ORTHO05D004036 0.0e+00 1859.3 2179 48.2
AUR62001342 Chenopodium quinoa HOM05D003586 ORTHO05D004036 0.0e+00 1856.6 2175 46.5
arahy.Tifrunner.gnm1.ann1.1899LM Arachis hypogaea HOM05D003586 ORTHO05D004036 0.0e+00 1855.1 2179 48.1
CiPaw.07G185400 Carya illinoinensis HOM05D003586 ORTHO05D004036 0.0e+00 1853.2 1973 51.6
Duzib205G0263 Durio zibethinus HOM05D003586 ORTHO05D004036 0.0e+00 1850.5 2191 48.7
Lj8C46T11 Lonicera japonica HOM05D003586 ORTHO05D004036 0.0e+00 1833.2 2165 48.8
ATR0057G101 Amborella trichopoda HOM05D003586 ORTHO05D004036 0.0e+00 1832.0 2196 48.3
MSTRG.139 Avicennia marina HOM05D003586 ORTHO05D004036 0.0e+00 1819.7 2179 47.2
Solyc03g093480.3 Solanum lycopersicum HOM05D003586 ORTHO05D004036 0.0e+00 1808.1 2186 47.1
Sopen03g024310 Solanum pennellii HOM05D003586 ORTHO05D004036 0.0e+00 1803.5 2186 47.1
Nitab4.5_0003173g0040 Nicotiana tabacum HOM05D003586 ORTHO05D004036 0.0e+00 1801.9 2185 47.2
Peaxi162Scf00271g00727 Petunia axillaris HOM05D003586 ORTHO05D004036 0.0e+00 1790.4 2185 46.5
Cc02_g04680 Coffea canephora HOM05D003586 ORTHO05D004036 0.0e+00 1785.8 2187 47.2
THA.LOC104811536 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 0.0e+00 1785.4 2238 45.3
Thhalv10019871m.g Eutrema salsugineum HOM05D003586 ORTHO05D004036 0.0e+00 1749.6 2240 45.2
AT3G06530 Arabidopsis thaliana HOM05D003586 ORTHO05D004036 0.0e+00 1726.5 2248 45.1
BraA05t22871Z Brassica rapa HOM05D003586 ORTHO05D004036 0.0e+00 1718.0 2245 44.4
Carub.0003s0599 Capsella rubella HOM05D003586 ORTHO05D004036 0.0e+00 1715.3 2248 44.9
AL3G17560 Arabidopsis lyrata HOM05D003586 ORTHO05D004036 0.0e+00 1710.7 2254 44.7
C05p60700 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1706.8 2241 44.4
BolC5t34730H Brassica oleracea HOM05D003586 ORTHO05D004036 0.0e+00 1695.2 2249 43.9
Migut.O00372 Erythranthe guttata HOM05D003586 ORTHO05D004036 0.0e+00 1692.2 2187 44.8
Aa31LG5G17060 Aethionema arabicum HOM05D003586 ORTHO05D004036 0.0e+00 1689.9 2246 44.7
CARHR081080 Cardamine hirsuta HOM05D003586 ORTHO05D004036 0.0e+00 1688.7 2242 44.8
Ah.08g217720 Amaranthus hybridus HOM05D003586 ORTHO05D004036 0.0e+00 1667.1 2163 44.3
Zm00001eb123540 Zea mays HOM05D003586 ORTHO05D004036 0.0e+00 1667.1 2180 44.0
Sp3g05470 Schrenkiella parvula HOM05D003586 ORTHO05D004036 0.0e+00 1665.2 2241 43.6
SGA_v2.0_scaffold56G19917 Striga asiatica HOM05D003586 ORTHO05D004036 0.0e+00 1662.5 2301 42.5
Medtr5g092370 Medicago truncatula HOM05D003586 ORTHO05D004036 0.0e+00 1649.4 2172 45.5
CDE04G1406 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 0.0e+00 1625.5 2174 45.0
RcHm_v2.0_Chr1g0373721 Rosa chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1603.2 1815 50.4
Sc20g0000680 Simmondsia chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1599.3 1960 45.8
SHI14045 Sapria himalayana HOM05D003586 ORTHO05D004036 0.0e+00 1541.6 2330 41.5
Nitab4.5_0005495g0020 Nicotiana tabacum HOM05D003586 ORTHO05D004036 0.0e+00 1451.0 1916 44.4
Eucgr.A02921 Eucalyptus grandis HOM05D003586 ORTHO05D004036 0.0e+00 1441.8 1776 47.0
CANSAT56G2655 Cannabis sativa HOM05D003586 ORTHO05D004036 0.0e+00 1441.0 1861 46.6
Actinidia13607 Actinidia chinensis HOM05D003586 ORTHO05D004036 0.0e+00 1328.2 1432 51.3
A05p41500 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1323.9 1844 43.0
BraA03t12653Z Brassica rapa HOM05D003586 ORTHO05D004036 0.0e+00 1309.3 1848 42.7
C03p42210 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1302.7 1838 42.6
BolC3t16501H Brassica oleracea HOM05D003586 ORTHO05D004036 0.0e+00 1302.0 1848 42.6
A03p34730 Brassica napus HOM05D003586 ORTHO05D004036 0.0e+00 1299.6 1847 42.4
ClCG07G016940 Citrullus lanatus HOM05D003586 ORTHO05D004036 0.0e+00 1295.8 1703 44.5
SalBow2G0990 Salvia bowleyana HOM05D003586 ORTHO05D004036 0.0e+00 1256.5 1528 46.4
Atru.chr1.904 Acer truncatum HOM05D003586 ORTHO05D004036 0.0e+00 1228.4 1385 49.5
CAN.G485.20 Capsicum annuum HOM05D003586 ORTHO05D004036 0.0e+00 1179.5 1483 45.8
unitig_62.g23920 Utricularia gibba HOM05D003586 ORTHO05D004036 0.0e+00 1119.0 2207 35.1
Hma1.2p1_1404F.1_g281290 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 2.2e-310 1070.1 1056 54.5
MBI05_g26488_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 5.2e-307 1058.9 1415 45.2
Mapoly0043s0008 Marchantia polymorpha HOM05D003586 ORTHO05D004036 2.4e-288 996.9 2217 32.1
MELO3C017650.2 Cucumis melo HOM05D003586 ORTHO05D004036 2.1e-284 983.8 1194 45.6
Cpa.g.sc13.262 Carica papaya HOM05D003586 ORTHO05D004036 3.1e-283 979.9 980 53.6
HPP92_014934 Vanilla planifolia HOM05D003586 ORTHO05D004036 3.4e-282 976.5 1204 47.2
Pp3c3_10580 Physcomitrium patens HOM05D003586 ORTHO05D004036 3.3e-269 933.3 2213 31.9
MBI05_g28033_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 7.8e-263 912.1 804 59.6
SMO358G0582 Selaginella moellendorffii HOM05D003586 ORTHO05D004036 1.2e-247 861.7 2175 30.7
AagrBONN_evm.TU.Sc2ySwM_344.3595 Anthoceros agrestis HOM05D003586 ORTHO05D004036 4.3e-245 853.2 2094 29.5
HPP92_014907 Vanilla planifolia HOM05D003586 ORTHO05D004036 5.5e-240 836.3 1159 41.8
Hma1.2p1_1404F.1_g281300 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 1.1e-235 822.0 723 59.3
MBI13_g48198_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 4.0e-235 820.1 845 53.4
MBI01_g47166_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 4.2e-232 810.1 846 53.4
CBR_g19186 Chara braunii HOM05D003586 ORTHO05D004036 2.0e-210 738.0 2343 28.2
MBI13_g42134_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 8.5e-201 706.1 801 50.9
CANSAT56G4028 Cannabis sativa HOM05D003586 ORTHO05D004036 3.4e-165 587.8 841 41.3
MBI01_g47186_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 8.3e-164 583.2 696 48.6
Hma1.2p1_1580F.1_g291890 Hydrangea macrophylla HOM05D003586 ORTHO05D004036 1.0e-153 549.7 632 48.6
CAN.G485.19 Capsicum annuum HOM05D003586 ORTHO05D004036 1.5e-149 535.8 639 46.2
SalBow2G2772 Salvia bowleyana HOM05D003586 ORTHO05D004036 2.1e-146 525.4 633 46.1
ClCG07G016950 Citrullus lanatus HOM05D003586 ORTHO05D004036 4.9e-140 504.2 500 50.8
Cpa.g.sc13.258 Carica papaya HOM05D003586 ORTHO05D004036 1.8e-134 485.7 557 49.0
FAN06G4468 Fragaria x ananassa HOM05D003586 ORTHO05D004036 4.9e-132 477.6 647 44.4
MBI13_g19469_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 3.2e-131 474.9 763 39.4
MBI01_g30817_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 9.3e-131 473.4 605 46.1
SEGI_04827 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 9.3e-131 473.4 654 41.6
MBI05_g26487_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.2e-125 456.4 412 58.3
MBI01_g18557_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 7.4e-112 410.6 404 56.4
SHI14048 Sapria himalayana HOM05D003586 ORTHO05D004036 5.7e-104 384.4 874 34.6
MBI01_g47337_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 9.1e-102 377.1 479 45.9
RcHm_v2.0_Chr1g0373711 Rosa chinensis HOM05D003586 ORTHO05D004036 3.6e-98 365.2 360 51.4
PSO782G1165 Papaver somniferum HOM05D003586 ORTHO05D004036 7.4e-96 357.5 358 57.8
Oeu055354.1 Olea europaea HOM05D003586 ORTHO05D004036 4.8e-95 354.8 397 46.6
MBI01_g24305_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 2.0e-88 332.8 383 49.3
Nitab4.5_0005495g0030 Nicotiana tabacum HOM05D003586 ORTHO05D004036 7.0e-86 324.3 311 54.3
Oeu013973.1 Olea europaea HOM05D003586 ORTHO05D004036 3.5e-85 322.0 305 53.1
MCO07G739 Micromonas commoda HOM05D003586 ORTHO05D004036 1.9e-83 316.2 2478 22.6
TPR.G35189 Trifolium pratense HOM05D003586 ORTHO05D004036 4.2e-83 315.1 386 43.8
THA.LOC104802945 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 3.0e-81 308.9 262 60.7
MBI01_g18556_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 4.1e-78 298.5 342 48.8
Os04g0548300 Oryza sativa ssp. japonica HOM05D003586 ORTHO05D004036 2.5e-75 289.3 229 61.1
Migut.F01200 Erythranthe guttata HOM05D003586 ORTHO05D004036 9.1e-70 270.8 217 63.1
Glyma.03G109700 Glycine max HOM05D003586 ORTHO05D004036 1.7e-68 266.5 393 41.2
Cpa.g.sc13.260 Carica papaya HOM05D003586 ORTHO05D004036 3.0e-65 255.8 608 33.1
Atru.chr1.903 Acer truncatum HOM05D003586 ORTHO05D004036 5.2e-65 255.0 300 48.0
PSO782G1733 Papaver somniferum HOM05D003586 ORTHO05D004036 4.3e-59 235.3 239 53.1
Lsat_1_v5_gn_1_161 Lactuca sativa HOM05D003586 ORTHO05D004036 3.6e-58 232.3 481 35.6
FAN06G2869 Fragaria x ananassa HOM05D003586 ORTHO05D004036 6.2e-58 231.5 197 56.9
Cre12.g548000 Chlamydomonas reinhardtii HOM05D003586 ORTHO05D004036 2.2e-55 223.0 2603 20.4
Rhsim03G0111100 Rhododendron simsii HOM05D003586 ORTHO05D004036 1.4e-54 220.3 359 37.9
Glyma.08G286950 Glycine max HOM05D003586 ORTHO05D004036 3.2e-54 219.2 313 41.2
Psat0s4851g0040 Pisum sativum HOM05D003586 ORTHO05D004036 6.6e-52 211.5 224 48.2
Psat0s7016g0120 Pisum sativum HOM05D003586 ORTHO05D004036 6.6e-52 211.5 224 48.2
Dinv06589 Davidia involucrata HOM05D003586 ORTHO05D004036 4.0e-49 202.2 127 76.4
PGSC0003DMG400010751 Solanum tuberosum HOM05D003586 ORTHO05D004036 9.2e-46 191.0 115 80.9
Psat1g100680 Pisum sativum HOM05D003266 ORTHO05D003718 5.1e-44 185.3 226 45.6
SHI14050 Sapria himalayana HOM05D003586 ORTHO05D004036 4.7e-42 178.7 144 61.1
Gorai.003G117300 Gossypium raimondii HOM05D003586 ORTHO05D004036 7.8e-37 161.4 181 44.2
Gohir.D03G110801 Gossypium hirsutum HOM05D003586 ORTHO05D004036 3.9e-36 159.1 181 44.2
MBI13_g17200_MAGBIO Magnolia biondii HOM05D003586 ORTHO05D004036 1.9e-35 156.8 94 85.1
SEGI_01219 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 5.8e-32 145.2 226 38.5
THA.LOC104803128 Tarenaya hassleriana HOM05D003586 ORTHO05D004036 7.8e-29 134.8 223 39.5
Cfa023294 Carpinus fangiana HOM05D003586 ORTHO05D004036 1.3e-28 134.0 1085 22.9
Psat5g116160 Pisum sativum HOM05D003586 ORTHO05D004036 4.8e-26 125.6 146 48.6
HPP92_014933 Vanilla planifolia HOM05D003586 ORTHO05D004036 7.6e-24 118.2 202 37.6
Psat1g036520 Pisum sativum HOM05D003586 ORTHO05D004036 1.6e-21 110.5 131 46.6
VMungo0251G1425 Vigna mungo HOM05D003586 ORTHO05D004036 1.6e-18 100.5 150 37.3
C05p54660 Brassica napus HOM05D000558 ORTHO05D004036 6.4e-15 88.6 306 28.4
SEGI_38341 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 6.4e-15 88.6 180 35.6
CDE12G0325 Ceratophyllum demersum HOM05D003586 ORTHO05D004036 1.4e-14 87.4 94 48.9
PRCOL_00000377 Prasinoderma coloniale HOM05D003586 ORTHO05D004036 1.4e-14 87.4 918 19.8
Ah.05g175250 Amaranthus hybridus HOM05D003586 ORTHO05D004036 2.4e-14 86.7 125 35.2
SHI14054 Sapria himalayana HOM05D003586 ORTHO05D004036 2.7e-13 83.2 56 71.4
arahy.Tifrunner.gnm1.ann1.KSY044 Arachis hypogaea HOM05D000218 ORTHO05D000125 7.9e-13 81.6 82 51.2
BolC5t34134H Brassica oleracea HOM05D003586 ORTHO05D004036 3.9e-12 79.3 82 46.3
Actinidia09313 Actinidia chinensis HOM05D003586 ORTHO05D004036 3.1e-09 69.7 402 25.1
Aa31LG5G17080 Aethionema arabicum HOM05D003586 ORTHO05D004036 1.2e-08 67.8 47 72.3
SEGI_27748 Sequoiadendron giganteum HOM05D003586 ORTHO05D004036 1.2e-08 67.8 139 36.0
Psat0s4928g0040 Pisum sativum HOM05D000188 ORTHO05D003976 7.6e-08 65.1 122 33.6
Psat5g053280 Pisum sativum HOM05D003586 ORTHO05D004036 1.0e-07 64.7 55 58.2
SMO358G0141 Selaginella moellendorffii HOM05D003586 ORTHO05D377094 3.8e-07 62.8 116 31.9
arahy.Tifrunner.gnm1.ann1.EJWE4G Arachis hypogaea HOM05D003586 ORTHO05D004036 3.2e-06 59.7 40 62.5
arahy.Tifrunner.gnm1.ann1.AGWW40 Arachis hypogaea HOM05D000072 ORTHO05D000026 5.5e-06 58.9 40 62.5


User provided reference genes

Program Settings