Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G8871 Papaver somniferum HOM05D004653 ORTHO05D006221 0.0e+00 1127.1 547 100.0
PSO541G1602 Papaver somniferum HOM05D004653 ORTHO05D006221 0.0e+00 1100.5 548 98.0
TAR376G1013 Trochodendron aralioides HOM05D004653 ORTHO05D006221 9.9e-247 856.7 552 73.7
Nn1g05497 Nelumbo nucifera HOM05D004653 ORTHO05D006221 4.2e-245 851.3 528 76.7
Atru.chr13.1058 Acer truncatum HOM05D004653 ORTHO05D006221 2.1e-241 839.0 544 74.1
GSVIVG01009125001 Vitis vinifera HOM05D004653 ORTHO05D006221 1.4e-240 836.3 500 77.2
MBI06_g18790_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 2.0e-239 832.4 563 71.8
TWI56G0982 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 2.6e-239 832.0 550 72.4
Aqoxy6G01474 Aquilegia oxysepala HOM05D004653 ORTHO05D006221 6.4e-238 827.4 568 72.7
COL.COLO4_11961 Corchorus olitorius HOM05D004653 ORTHO05D006221 1.4e-237 826.2 520 75.8
CSS0037453 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 3.2e-237 825.1 549 72.1
Thecc.08G066400 Theobroma cacao HOM05D004653 ORTHO05D006221 7.4e-234 813.9 466 81.1
Ciclev10000790m.g Citrus clementina HOM05D004653 ORTHO05D006221 3.7e-233 811.6 545 71.9
Manes.18G062000 Manihot esculenta HOM05D004653 ORTHO05D006221 9.0e-232 807.0 548 71.7
MD15G1380600 Malus domestica HOM05D004653 ORTHO05D006221 1.2e-231 806.6 514 74.5
QL09p016947 Quercus lobata HOM05D004653 ORTHO05D006221 1.2e-231 806.6 579 69.1
THA.LOC104799811 Tarenaya hassleriana HOM05D004653 ORTHO05D006221 1.2e-231 806.6 515 74.8
Actinidia30803 Actinidia chinensis HOM05D004653 ORTHO05D006221 5.8e-231 804.3 545 70.6
Gorai.009G279800 Gossypium raimondii HOM05D004653 ORTHO05D006221 5.8e-231 804.3 547 70.9
Cfa013708 Carpinus fangiana HOM05D004653 ORTHO05D006221 1.3e-230 803.1 479 78.7
Lj1g0013887 Lotus japonicus HOM05D004653 ORTHO05D006221 1.3e-230 803.1 535 72.1
Potri.002G102600 Populus trichocarpa HOM05D004653 ORTHO05D006221 3.8e-230 801.6 465 79.4
Migut.I00061 Erythranthe guttata HOM05D004653 ORTHO05D006221 8.4e-230 800.4 549 71.4
FAN08G1395 Fragaria x ananassa HOM05D004653 ORTHO05D006221 3.2e-229 798.5 504 74.2
Hma1.2p1_0961F.1_g241730 Hydrangea macrophylla HOM05D004653 ORTHO05D006221 3.2e-229 798.5 478 77.4
CiPaw.07G169200 Carya illinoinensis HOM05D004653 ORTHO05D006221 7.1e-229 797.3 465 79.4
Prupe.1G526800 Prunus persica HOM05D004653 ORTHO05D006221 1.2e-228 796.6 461 80.0
FAN04G0673 Fragaria x ananassa HOM05D004653 ORTHO05D006221 1.6e-228 796.2 539 71.2
TAR628G1442 Trochodendron aralioides HOM05D004653 ORTHO05D006221 1.6e-228 796.2 474 77.8
Ciclev10001057m.g Citrus clementina HOM05D004653 ORTHO05D006221 4.6e-228 794.7 468 78.8
FvH4_5g35940 Fragaria vesca HOM05D004653 ORTHO05D006221 4.6e-228 794.7 540 71.5
Gohir.D05G267700 Gossypium hirsutum HOM05D004653 ORTHO05D006221 4.6e-228 794.7 547 70.2
ClCG11G014410 Citrullus lanatus HOM05D004653 ORTHO05D006221 7.9e-228 793.9 534 72.1
FAN18G1441 Fragaria x ananassa HOM05D004653 ORTHO05D006221 7.9e-228 793.9 540 71.5
Manes.02G147500 Manihot esculenta HOM05D004653 ORTHO05D006221 1.3e-227 793.1 468 78.6
RcHm_v2.0_Chr7g0237681 Rosa chinensis HOM05D004653 ORTHO05D006221 1.3e-227 793.1 471 77.7
arahy.Tifrunner.gnm1.ann1.QAT0QL Arachis hypogaea HOM05D004653 ORTHO05D006221 3.9e-227 791.6 466 79.4
AT5G49970 Arabidopsis thaliana HOM05D004653 ORTHO05D006221 6.7e-227 790.8 519 72.8
MD08G1191800 Malus domestica HOM05D004653 ORTHO05D006221 6.7e-227 790.8 531 71.2
VMungo1309G1466 Vigna mungo HOM05D004653 ORTHO05D006221 1.1e-226 790.0 463 78.8
Lj4C92G16 Lonicera japonica HOM05D004653 ORTHO05D006221 1.5e-226 789.6 473 76.5
Phvul.009G037700 Phaseolus vulgaris HOM05D004653 ORTHO05D006221 1.5e-226 789.6 544 70.6
PGR031G0949 Punica granatum HOM05D004653 ORTHO05D006221 1.9e-226 789.3 544 71.1
Sp6g11760 Schrenkiella parvula HOM05D004653 ORTHO05D006221 9.6e-226 786.9 516 72.3
PGSC0003DMG401024581 Solanum tuberosum HOM05D004653 ORTHO05D006221 4.8e-225 784.6 538 68.6
CANSAT11G2183 Cannabis sativa HOM05D004653 ORTHO05D006221 8.2e-225 783.9 521 72.4
CDE05G0914 Ceratophyllum demersum HOM05D004653 ORTHO05D006221 8.2e-225 783.9 474 77.2
Cpa.g.sc36.204 Carica papaya HOM05D004653 ORTHO05D006221 1.8e-224 782.7 460 79.1
Solyc03g113780.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 2.4e-224 782.3 542 68.1
Carub.0008s0987 Capsella rubella HOM05D004653 ORTHO05D006221 5.3e-224 781.2 460 77.6
MELO3C003541.2 Cucumis melo HOM05D004653 ORTHO05D006221 1.2e-223 780.0 536 70.5
MSTRG.23086 Avicennia marina HOM05D004653 ORTHO05D006221 1.5e-223 779.6 547 68.9
CsaV3_3G047810 Cucumis sativus L. HOM05D004653 ORTHO05D006221 1.5e-223 779.6 465 77.8
AL8G23940 Arabidopsis lyrata HOM05D004653 ORTHO05D006221 2.0e-223 779.2 473 76.3
Thhalv10013217m.g Eutrema salsugineum HOM05D004653 ORTHO05D006221 3.4e-223 778.5 465 77.2
Medtr3g100890 Medicago truncatula HOM05D004653 ORTHO05D006221 3.4e-223 778.5 475 76.2
TWI36G0595 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 3.4e-223 778.5 466 77.0
Haze_22352 Corylus avellana HOM05D004653 ORTHO05D006221 4.5e-223 778.1 611 64.2
SalBow5G1317 Salvia bowleyana HOM05D004653 ORTHO05D006221 1.0e-222 776.9 547 68.9
Sopen03g032830 Solanum pennellii HOM05D004653 ORTHO05D006221 2.2e-222 775.8 538 67.8
TPR.G26053 Trifolium pratense HOM05D004653 ORTHO05D006221 2.2e-222 775.8 462 77.7
Sabra02G0080400 Salix brachista HOM05D004653 ORTHO05D006221 1.1e-221 773.5 616 62.7
Lalb_Chr23g0270281 Lupinus albus HOM05D004653 ORTHO05D006221 1.4e-221 773.1 461 77.2
BcaC01g04840 Brassica carinata HOM05D004653 ORTHO05D006221 1.9e-221 772.7 469 77.8
Eucgr.F02123 Eucalyptus grandis HOM05D004653 ORTHO05D006221 2.5e-221 772.3 463 77.5
Sed0021217 Sechium edule HOM05D004653 ORTHO05D006221 2.5e-221 772.3 543 70.2
CAN.G853.18 Capsicum annuum HOM05D004653 ORTHO05D006221 3.2e-221 771.9 462 75.8
CARHR258740 Cardamine hirsuta HOM05D004653 ORTHO05D006221 4.2e-221 771.5 474 75.5
AUR62027845 Chenopodium quinoa HOM05D004653 ORTHO05D006221 4.2e-221 771.5 545 69.7
A03p27590 Brassica napus HOM05D004653 ORTHO05D006221 7.2e-221 770.8 469 77.4
CSS0025013 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 7.2e-221 770.8 471 75.2
Psat5g045400 Pisum sativum HOM05D004653 ORTHO05D006221 1.6e-220 769.6 546 68.3
Aa31sc34G110 Aethionema arabicum HOM05D004653 ORTHO05D006221 3.5e-220 768.5 487 73.5
BolC3t15652H Brassica oleracea HOM05D004653 ORTHO05D006221 7.9e-220 767.3 469 77.2
BraA03t11972Z Brassica rapa HOM05D004653 ORTHO05D006221 7.9e-220 767.3 469 77.0
C03p33300 Brassica napus HOM05D004653 ORTHO05D006221 1.3e-219 766.5 469 77.2
SGA_v2.0_scaffold25G10868 Striga asiatica HOM05D004653 ORTHO05D006221 1.8e-219 766.1 554 67.5
AUR62019003 Chenopodium quinoa HOM05D004653 ORTHO05D006221 6.7e-219 764.2 545 69.0
Hund26999 Selenicereus undatus HOM05D004653 ORTHO05D006221 8.7e-219 763.8 565 67.4
Lalb_Chr11g0065151 Lupinus albus HOM05D004653 ORTHO05D006221 1.1e-218 763.5 460 76.7
HanXRQChr02g0047071 Helianthus annuus HOM05D004653 ORTHO05D006221 1.5e-218 763.1 549 67.2
Ca_15984_v3 Cicer arietinum L. HOM05D004653 ORTHO05D006221 2.5e-218 762.3 461 76.1
ATR0022G001 Amborella trichopoda HOM05D004653 ORTHO05D006221 4.3e-218 761.5 525 69.5
BcaB01g02929 Brassica carinata HOM05D004653 ORTHO05D006221 4.3e-218 761.5 517 71.6
FAN13G0646 Fragaria x ananassa HOM05D004653 ORTHO05D006221 2.8e-217 758.8 520 70.8
arahy.Tifrunner.gnm1.ann1.Y1WP0G Arachis hypogaea HOM05D004653 ORTHO05D006221 1.5e-215 753.1 466 76.4
Os10g0377800 Oryza sativa ssp. japonica HOM05D004653 ORTHO05D006221 3.4e-215 751.9 461 75.7
DCAR_012873 Daucus carota HOM05D004653 ORTHO05D006221 5.0e-214 748.0 517 68.7
Rhsim06G0074900 Rhododendron simsii HOM05D004653 ORTHO05D006221 3.6e-212 741.9 491 71.9
vmacro22331 Vaccinium macrocarpon HOM05D004653 ORTHO05D006221 2.3e-211 739.2 660 57.4
EL10Ac1g01097 Beta vulgaris HOM05D004653 ORTHO05D006221 2.5e-210 735.7 532 69.0
Gohir.A05G265600 Gossypium hirsutum HOM05D004653 ORTHO05D006221 7.4e-210 734.2 547 66.4
ECA247G2604 Erigeron canadensis HOM05D004653 ORTHO05D006221 2.8e-209 732.3 461 73.1
Lsat_1_v5_gn_1_2401 Lactuca sativa HOM05D004653 ORTHO05D006221 3.7e-209 731.9 496 68.5
Glyma.04G093600 Glycine max HOM05D004653 ORTHO05D006221 1.2e-207 726.9 541 66.9
Sc01g0000970 Simmondsia chinensis HOM05D004653 ORTHO05D006221 1.4e-205 719.9 421 78.1
MBI02_g18292_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 5.5e-205 718.0 472 71.4
Sc01g0000980 Simmondsia chinensis HOM05D004653 ORTHO05D006221 7.9e-204 714.1 421 77.7
Cc04_g13590 Coffea canephora HOM05D004653 ORTHO05D006221 5.1e-203 711.4 436 75.0
Nitab4.5_0000642g0300 Nicotiana tabacum HOM05D004653 ORTHO05D006221 5.1e-203 711.4 539 64.9
HPP92_004087 Vanilla planifolia HOM05D004653 ORTHO05D006221 5.1e-203 711.4 554 63.4
HPP92_004102 Vanilla planifolia HOM05D004653 ORTHO05D006221 5.7e-202 708.0 530 64.9
unitig_26.g9628 Utricularia gibba HOM05D004653 ORTHO05D006221 1.1e-200 703.7 458 70.5
Dinv44830 Davidia involucrata HOM05D004653 ORTHO05D006221 3.0e-195 685.6 476 71.2
Mapoly0107s0030 Marchantia polymorpha HOM05D004653 ORTHO05D006221 4.5e-191 671.8 465 66.9
Cc07_g19270 Coffea canephora HOM05D004653 ORTHO05D006221 1.2e-186 657.1 462 65.2
Oeu042971.1 Olea europaea HOM05D004653 ORTHO05D006221 1.2e-186 657.1 442 69.0
CAN.G853.20 Capsicum annuum HOM05D004653 ORTHO05D006221 9.4e-181 637.5 464 62.5
Oeu042973.1 Olea europaea HOM05D004653 ORTHO05D006221 1.0e-179 634.0 421 70.1
SMO356G0546 Selaginella moellendorffii HOM05D004653 ORTHO05D006221 5.2e-179 631.7 451 64.3
Pp3c2_19610 Physcomitrium patens HOM05D004653 ORTHO05D006221 1.3e-177 627.1 512 58.2
Sopen03g032820 Solanum pennellii HOM05D004653 ORTHO05D006221 3.1e-176 622.5 464 61.6
Solyc03g113770.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 1.5e-173 613.6 464 60.8
Oeu018527.2 Olea europaea HOM05D004653 ORTHO05D006221 1.2e-172 610.5 470 64.0
SGA_v2.0_scaffold467G52033 Striga asiatica HOM05D004653 ORTHO05D006221 4.0e-171 605.5 462 62.8
Migut.I00062 Erythranthe guttata HOM05D004653 ORTHO05D006221 7.5e-170 601.3 459 61.7
CSS0007986 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 5.4e-168 595.1 358 76.3
Nitab4.5_0007586g0050 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.6e-167 593.6 463 60.9
SalBow5G2478 Salvia bowleyana HOM05D004653 ORTHO05D006221 2.3e-166 589.7 454 60.8
Peaxi162Scf00017g00233 Petunia axillaris HOM05D004653 ORTHO05D006221 5.4e-160 568.5 447 62.6
AagrBONN_evm.TU.Sc2ySwM_368.1227 Anthoceros agrestis HOM05D004653 ORTHO05D006221 1.1e-157 560.8 472 57.2
Nitab4.5_0024258g0010 Nicotiana tabacum HOM05D004653 ORTHO05D006221 4.1e-144 515.8 398 64.6
MSTRG.23084 Avicennia marina HOM05D004653 ORTHO05D006221 1.5e-141 507.3 355 67.9
Cre08.g378200 Chlamydomonas reinhardtii HOM05D004653 ORTHO05D006221 1.3e-126 457.6 502 49.2
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 9.9e-122 441.4 316 67.7
Lalb_Chr23g0270171 Lupinus albus HOM05D004653 ORTHO05D006221 3.0e-118 429.9 254 76.8
PGSC0003DMG400024580 Solanum tuberosum HOM05D004653 ORTHO05D006221 5.1e-118 429.1 421 49.9
Zm00001eb027880 Zea mays HOM05D004653 ORTHO05D006221 1.5e-117 427.6 348 63.8
CSS0017284 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 4.3e-101 372.9 261 65.9
Actinidia10360 Actinidia chinensis HOM05D004653 ORTHO05D006221 1.9e-96 357.5 333 56.5
Glyma.06G095500 Glycine max HOM05D004653 ORTHO05D006221 5.9e-90 335.9 197 80.7
CBR_g24311 Chara braunii HOM05D000019 ORTHO05D000353 1.1e-88 331.6 255 59.6
SEGI_17033 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 5.5e-88 329.3 214 68.7
MCO02G367 Micromonas commoda HOM05D004653 ORTHO05D006221 8.8e-78 295.4 240 58.8
Duzib116G0761 Durio zibethinus HOM05D004653 ORTHO05D006221 1.2e-66 258.5 192 68.8
CBR_g24313 Chara braunii HOM05D004653 ORTHO05D006221 4.7e-55 219.9 176 60.8
Lalb_Chr23g0270161 Lupinus albus HOM05D004653 ORTHO05D006221 6.4e-52 209.5 144 68.8
Dinv42645 Davidia involucrata HOM05D004653 ORTHO05D006221 3.2e-43 180.6 156 59.6
Nitab4.5_0005655g0030 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.6e-42 178.3 113 67.3
Glyma.06G095451 Glycine max HOM05D004653 ORTHO05D006221 8.6e-41 172.6 178 52.8
Cc06_g21090 Coffea canephora HOM05D004653 ORTHO05D006221 9.5e-40 169.1 101 81.2
SEGI_12419 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 1.8e-38 164.9 117 66.7
Potri.005G159500 Populus trichocarpa HOM05D004653 ORTHO05D006221 1.4e-35 155.2 115 64.3
CSS0010132 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 2.1e-31 141.4 129 55.0
Dinv42644 Davidia involucrata HOM05D004653 ORTHO05D006221 2.4e-19 101.3 113 51.3
PRCOL_00006962 Prasinoderma coloniale HOM05D004653 ORTHO05D006221 1.3e-15 89.0 60 60.0
Gohir.A06G032660 Gossypium hirsutum HOM05D004653 ORTHO05D019566 2.0e-13 81.6 49 79.6
Gorai.010G036500 Gossypium raimondii HOM05D004653 ORTHO05D019566 2.0e-13 81.6 49 79.6
BcaB08g35370 Brassica carinata HOM05D004653 ORTHO05D006221 1.1e-11 75.9 57 64.9
Lalb_Chr23g0270181 Lupinus albus HOM05D004653 ORTHO05D019566 5.4e-11 73.6 58 67.2
ATR1171G001 Amborella trichopoda HOM05D004653 ORTHO05D019566 7.9e-10 69.7 96 46.9
MBI04_g21513_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D019566 5.1e-09 67.0 116 39.7
CSS0005277 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D019566 1.5e-08 65.5 60 56.7


User provided reference genes

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