Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 0.0e+00 1629.8 915 100.0
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 0.0e+00 1568.5 918 95.3
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 3.1e-311 1071.6 761 78.7
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 7.1e-274 947.6 935 57.2
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.7e-273 945.7 936 60.0
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 2.8e-262 909.1 916 58.3
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 2.2e-259 899.4 942 56.6
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 2.1e-257 892.9 893 58.7
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 6.7e-256 887.9 873 60.1
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 8.8e-256 887.5 940 57.7
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 1.5e-255 886.7 928 57.3
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 1.3e-251 873.6 883 58.4
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 2.2e-251 872.8 921 56.5
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 4.2e-250 868.6 932 54.8
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.6e-249 866.7 916 56.1
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 3.9e-248 862.1 877 56.2
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 5.2e-248 861.7 865 58.3
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 7.4e-247 857.8 918 54.6
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 3.1e-245 852.4 873 58.3
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 4.1e-245 852.0 875 57.9
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 6.5e-243 844.7 885 56.0
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 4.2e-242 842.0 918 55.2
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 7.2e-242 841.3 878 57.3
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 1.8e-240 836.6 932 53.0
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 5.2e-240 835.1 913 56.1
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 2.0e-239 833.2 877 55.1
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 9.7e-239 830.9 878 55.1
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 1.7e-238 830.1 877 55.8
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 2.8e-238 829.3 878 56.4
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 8.2e-238 827.8 872 57.6
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 4.1e-237 825.5 910 53.3
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 1.7e-235 820.1 932 55.2
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 6.5e-235 818.1 919 53.8
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 9.4e-234 814.3 929 56.0
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 4.7e-233 812.0 915 52.8
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 1.8e-232 810.1 922 54.1
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.3e-232 809.7 887 54.6
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 5.2e-232 808.5 893 53.3
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.2e-231 807.4 884 56.3
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 1.5e-231 807.0 936 55.6
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 2.6e-231 806.2 920 54.9
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 2.6e-231 806.2 910 52.9
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 5.7e-231 805.1 884 56.4
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 1.3e-230 803.9 928 52.9
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 2.2e-230 803.1 913 51.7
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 3.7e-230 802.4 883 55.2
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 8.3e-230 801.2 890 54.2
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 1.4e-229 800.4 828 57.0
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 1.6e-228 797.0 872 55.2
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 1.3e-227 793.9 835 55.4
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 3.8e-227 792.3 925 53.4
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 5.0e-227 792.0 916 54.8
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 8.6e-227 791.2 916 54.5
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 1.5e-226 790.4 884 53.7
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 4.2e-226 788.9 920 53.8
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 7.2e-226 788.1 909 51.4
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 4.7e-225 785.4 916 52.5
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 8.0e-225 784.6 902 53.2
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 2.8e-222 776.2 941 52.8
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 8.3e-222 774.6 880 54.1
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 1.6e-220 770.4 919 51.6
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 5.9e-220 768.5 868 55.0
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 1.5e-218 763.8 926 52.9
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 9.5e-218 761.1 884 52.5
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 6.1e-217 758.4 884 53.2
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 3.4e-215 752.7 883 51.4
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 1.3e-214 750.7 907 51.5
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 1.3e-214 750.7 878 53.2
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 1.7e-214 750.4 886 51.8
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 4.9e-214 748.8 871 52.2
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 1.1e-213 747.7 871 53.6
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 2.0e-212 743.4 882 53.7
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 2.7e-212 743.0 891 53.5
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 7.8e-212 741.5 822 55.8
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 3.9e-211 739.2 922 50.2
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 5.6e-210 735.3 907 50.4
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 7.3e-210 734.9 927 49.3
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 3.6e-209 732.6 916 49.7
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 4.7e-209 732.3 921 50.5
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 6.2e-209 731.9 891 51.2
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 6.2e-209 731.9 455 89.5
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 1.5e-207 727.2 883 51.1
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 1.5e-207 727.2 925 48.6
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 3.7e-206 722.6 907 49.8
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 6.4e-206 721.8 893 53.3
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 1.4e-205 720.7 887 51.4
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 3.5e-204 716.1 892 49.9
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 3.9e-203 712.6 756 56.0
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 3.9e-203 712.6 884 49.2
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 6.6e-203 711.8 882 50.5
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 1.1e-202 711.1 853 53.9
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 2.5e-202 709.9 870 50.7
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 1.1e-200 704.5 807 52.5
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 3.1e-200 703.0 847 51.2
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 5.2e-200 702.2 916 48.7
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 5.2e-200 702.2 913 51.6
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 7.5e-199 698.4 890 50.8
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 3.2e-197 693.0 898 48.8
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 1.0e-195 688.0 882 48.0
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 1.7e-195 687.2 875 48.2
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 3.6e-193 679.5 882 50.2
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 1.4e-192 677.6 915 49.2
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 1.2e-191 674.5 903 49.5
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 5.8e-191 672.2 786 53.6
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 1.7e-190 670.6 892 49.6
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 8.7e-187 658.3 894 49.1
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 1.6e-180 637.5 920 47.4
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 4.0e-176 622.9 879 44.6
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 2.4e-173 613.6 879 45.8
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 2.3e-171 607.1 847 46.2
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 4.3e-170 602.8 909 43.7
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 2.1e-169 600.5 888 44.1
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.1e-168 598.2 609 56.7
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 3.4e-167 593.2 850 45.2
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 3.4e-159 566.6 577 57.7
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 5.8e-159 565.8 674 53.7
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 2.5e-157 560.5 887 43.7
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 2.4e-152 543.9 893 42.6
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.9e-150 537.0 1054 39.2
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 2.5e-146 523.9 637 52.4
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 3.3e-130 470.3 312 83.7
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 2.6e-122 444.1 410 62.7
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 9.1e-120 435.6 836 38.3
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 2.5e-117 427.6 925 38.8
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 4.2e-117 426.8 1061 35.4
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 2.3e-115 421.0 425 53.9
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 2.8e-108 397.5 762 38.6
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 1.5e-101 375.2 1002 35.3
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 3.7e-97 360.5 926 36.2
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 2.3e-91 341.3 340 55.3
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 5.1e-86 323.6 286 59.1
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.5e-85 321.2 280 61.1
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 4.9e-81 307.0 937 31.2
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 4.1e-80 303.9 895 31.1
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 4.1e-80 303.9 895 31.1
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 9.2e-80 302.8 351 51.0
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 6.9e-67 260.0 204 63.7
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 3.4e-66 257.7 241 57.7
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 3.0e-62 244.6 777 30.8
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 8.1e-60 236.5 409 41.8
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 9.0e-59 233.0 409 41.6
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 9.0e-59 233.0 423 42.3
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 7.6e-58 229.9 415 42.7
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 2.1e-52 211.8 368 42.1
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 5.8e-50 203.8 406 40.9
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 1.1e-48 199.5 461 36.2
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 6.2e-44 183.7 873 26.0
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 1.0e-41 176.4 176 61.4
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 2.9e-41 174.9 317 42.0
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 5.0e-41 174.1 154 59.7
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 1.9e-40 172.2 369 37.4
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 9.3e-40 169.9 179 53.1
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.7e-39 168.3 333 37.8
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 1.3e-38 166.0 311 41.5
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 6.7e-38 163.7 468 30.1
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 6.3e-36 157.1 214 41.6
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 5.3e-35 154.1 193 50.3
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 1.1e-32 146.4 693 26.7
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 4.2e-32 144.4 957 25.0
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 7.2e-32 143.7 166 53.6
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 1.0e-30 139.8 177 44.1
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 1.0e-30 139.8 230 40.0
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 9.7e-29 133.3 314 36.0
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 4.8e-28 131.0 314 34.7
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 1.4e-27 129.4 132 51.5
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 5.9e-26 124.0 281 36.7
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 2.9e-25 121.7 281 36.3
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 7.2e-24 117.1 129 51.2
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 3.6e-23 114.8 122 63.9
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 1.6e-10 72.8 60 60.0
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 4.5e-10 71.2 210 30.5
Rhsim01G0285700 Rhododendron simsii HOM05D000203 ORTHO05D000135 4.5e-10 71.2 293 29.4
MBI19_g43566_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D244402 2.2e-09 68.9 83 48.2
CAN.G619.12 Capsicum annuum HOM05D000880 ORTHO05D004760 6.5e-09 67.4 81 49.4
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 1.1e-08 66.6 175 27.4
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 4.2e-08 64.7 79 45.6
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 3.0e-06 58.5 60 56.7


User provided reference genes

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