Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 0.0e+00 1167.1 602 100.0
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 0.0e+00 1090.5 603 94.5
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 4.3e-158 562.4 593 55.0
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 3.3e-150 536.2 589 52.6
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 8.1e-141 505.0 479 56.6
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 1.8e-140 503.8 530 52.8
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 4.4e-139 499.2 522 52.1
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 2.1e-136 490.3 542 51.8
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 2.1e-136 490.3 555 50.8
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.3e-135 487.6 547 50.3
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 2.3e-135 486.9 555 50.6
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 3.9e-135 486.1 546 49.5
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 5.1e-135 485.7 545 49.5
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 8.6e-135 485.0 582 48.8
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 1.5e-134 484.2 534 50.4
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 1.5e-134 484.2 520 50.6
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 1.2e-133 481.1 487 52.4
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 1.1e-132 478.0 543 51.4
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 1.4e-132 477.6 492 52.4
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 2.3e-132 476.9 525 51.4
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 3.4e-131 473.0 564 48.0
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 7.1e-129 465.3 535 48.8
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 9.2e-129 464.9 498 51.6
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 9.2e-129 464.9 498 51.6
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 9.2e-129 464.9 569 48.7
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 1.6e-128 464.2 508 50.4
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 2.1e-128 463.8 551 49.5
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 3.3e-126 456.4 592 47.6
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 2.1e-125 453.8 548 48.0
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 4.0e-124 449.5 521 48.6
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 5.2e-124 449.1 587 46.0
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 2.6e-123 446.8 549 50.1
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 3.4e-123 446.4 431 56.6
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 9.9e-123 444.9 525 48.2
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 1.4e-121 441.0 530 47.5
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 9.3e-121 438.3 511 47.9
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 4.6e-120 436.0 479 50.5
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 1.7e-119 434.1 605 44.6
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 2.3e-119 433.7 471 51.8
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 1.5e-118 431.0 512 49.6
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.3e-117 427.9 453 51.9
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 2.1e-117 427.2 565 46.2
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 2.1e-117 427.2 542 47.2
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 2.8e-117 426.8 507 47.3
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 3.6e-117 426.4 430 52.6
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 4.8e-117 426.0 548 44.9
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 8.1e-117 425.2 532 45.7
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 1.4e-116 424.5 555 46.7
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 2.4e-116 423.7 556 44.1
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 3.1e-116 423.3 532 45.5
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 3.1e-116 423.3 659 41.0
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 3.1e-116 423.3 564 45.7
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 4.0e-116 422.9 480 47.5
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 9.0e-116 421.8 602 44.2
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 1.2e-115 421.4 508 47.0
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.5e-115 421.0 533 45.6
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 1.5e-115 421.0 552 47.3
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 1.3e-114 417.9 518 46.5
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 2.9e-114 416.8 528 47.0
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 3.2e-113 413.3 558 43.4
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 1.6e-112 411.0 619 42.2
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 2.1e-112 410.6 547 43.7
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 2.1e-112 410.6 421 53.4
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 2.1e-112 410.6 537 43.8
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 6.0e-112 409.1 421 52.0
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 1.8e-111 407.5 551 43.9
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 5.1e-111 406.0 607 41.8
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 8.7e-111 405.2 446 50.4
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 3.3e-110 403.3 540 43.9
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 2.1e-109 400.6 568 42.3
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.1e-108 398.3 559 42.9
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 3.1e-108 396.7 595 42.9
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 4.0e-108 396.4 500 46.0
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 1.1e-105 388.3 435 49.4
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 1.2e-104 384.8 538 42.8
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.1e-104 384.0 556 42.1
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 1.1e-102 378.3 554 42.1
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 1.9e-102 377.5 481 46.2
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 2.5e-102 377.1 546 42.5
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 9.6e-102 375.2 615 39.8
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 8.1e-101 372.1 542 42.4
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 1.1e-100 371.7 565 41.4
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 2.4e-100 370.5 528 43.6
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 1.5e-99 367.9 474 44.9
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 5.8e-99 365.9 480 44.2
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 6.5e-98 362.5 473 42.9
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 8.4e-98 362.1 471 42.9
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.1e-97 361.7 533 42.6
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 1.9e-97 360.9 471 45.2
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 3.2e-97 360.1 475 43.8
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 3.2e-97 360.1 467 44.1
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 4.2e-97 359.8 475 44.0
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 5.5e-97 359.4 478 44.6
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 7.1e-97 359.0 467 44.1
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 7.1e-97 359.0 467 44.1
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 9.3e-97 358.6 510 43.3
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 1.6e-96 357.8 396 53.3
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 1.1e-94 351.7 331 54.4
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 5.7e-94 349.4 559 38.5
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 2.6e-91 340.5 517 42.7
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 4.5e-91 339.7 493 41.0
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 1.3e-90 338.2 456 45.4
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 2.1e-88 330.9 504 41.7
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 2.4e-84 317.4 507 40.0
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 1.6e-80 304.7 476 39.1
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 4.6e-80 303.1 535 37.6
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 4.4e-78 296.6 239 59.4
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 1.3e-77 295.0 573 36.6
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 9.1e-68 262.3 397 45.6
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 5.5e-65 253.1 314 49.0
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.1e-64 251.1 546 35.0
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 1.3e-61 241.9 306 47.1
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 3.7e-61 240.4 294 49.3
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 8.2e-61 239.2 365 42.5
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 1.8e-60 238.0 307 47.2
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.0e-58 232.3 165 67.9
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 3.2e-57 227.3 171 61.4
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 9.8e-54 215.7 262 45.4
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 7.2e-49 199.5 342 37.7
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 1.8e-44 184.9 428 34.3
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 5.9e-43 179.9 409 36.7
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 1.0e-39 169.1 340 34.1
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 4.4e-38 163.7 138 57.2
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 8.3e-37 159.5 305 36.4
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 5.4e-36 156.8 294 35.7
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.6e-35 155.2 372 33.3
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 9.5e-33 146.0 236 37.7
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 2.1e-32 144.8 227 37.9
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 7.0e-28 129.8 290 32.8
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 6.0e-27 126.7 90 61.1
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 6.0e-27 126.7 90 61.1
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.7e-26 125.2 192 42.7
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 1.5e-22 112.1 130 43.8
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.3e-21 109.0 75 72.0
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.9e-20 105.1 165 45.5
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 9.2e-20 102.8 255 31.0
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 6.0e-19 100.1 332 24.7
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 8.6e-18 96.3 254 29.5
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 8.6e-18 96.3 254 29.5
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 8.6e-18 96.3 254 29.5
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 3.3e-17 94.4 254 28.7
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 3.3e-17 94.4 254 28.7
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 7.3e-17 93.2 380 25.0


User provided reference genes

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