Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G3325 Papaver somniferum HOM05D016375 ORTHO05D011376 5.3e-91 338.2 243 100.0
PSO017G1665 Papaver somniferum HOM05D015807 ORTHO05D011376 9.5e-16 88.2 158 37.3
PSO210G3738 Papaver somniferum HOM05D010315 ORTHO05D011376 3.6e-15 86.3 88 50.0
PSO478G3101 Papaver somniferum HOM05D015516 ORTHO05D011376 4.0e-14 82.8 64 64.1
PSO210G7725 Papaver somniferum HOM05D010315 ORTHO05D011376 8.9e-14 81.6 88 47.7
PSO732G0411 Papaver somniferum HOM05D016375 ORTHO05D011376 2.6e-13 80.1 38 94.7
PSO729G0202 Papaver somniferum HOM05D016375 ORTHO05D010954 2.2e-12 77.0 38 92.1
PSO732G0362 Papaver somniferum HOM05D010315 ORTHO05D016663 6.4e-12 75.5 81 46.9
CsaV3_3G035530 Cucumis sativus L. HOM05D000855 ORTHO05D008530 2.7e-10 70.1 104 34.6
Psat6g067680 Pisum sativum HOM05D000855 ORTHO05D008530 3.5e-10 69.7 104 36.5
MELO3C009312.2 Cucumis melo HOM05D000855 ORTHO05D008530 1.0e-09 68.2 104 33.7
PSO017G0246 Papaver somniferum HOM05D015516 ORTHO05D020960 1.0e-09 68.2 74 44.6
PSO585G0048 Papaver somniferum HOM05D020193 ORTHO05D011376 1.0e-09 68.2 62 48.4
Ca_11448_v3 Cicer arietinum L. HOM05D000855 ORTHO05D008530 1.7e-09 67.4 104 34.6
Sabra02G0034700 Salix brachista HOM05D017826 ORTHO05D003288 1.7e-09 67.4 236 22.5
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 3.0e-09 66.6 105 31.4
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 3.0e-09 66.6 103 35.0
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 3.0e-09 66.6 104 33.7
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 3.0e-09 66.6 48 66.7
QL07p045308 Quercus lobata HOM05D000855 ORTHO05D008530 3.0e-09 66.6 103 35.0
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 3.9e-09 66.2 103 34.0
Cc05_g07730 Coffea canephora HOM05D006999 ORTHO05D008936 3.9e-09 66.2 102 31.4
MBI12_g09300_MAGBIO Magnolia biondii HOM05D000855 ORTHO05D008530 3.9e-09 66.2 103 35.0
PSO063G0011 Papaver somniferum HOM05D010315 ORTHO05D011376 5.0e-09 65.9 207 27.1
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 6.6e-09 65.5 103 34.0
C04p29550 Brassica napus HOM05D027743 ORTHO05D011376 8.6e-09 65.1 120 32.5
Hma1.2p1_0111F.1_g053850 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 8.6e-09 65.1 103 35.0
Hma1.2p1_0111F.1_g053860 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 8.6e-09 65.1 103 35.0
PSO675G6037 Papaver somniferum HOM05D010315 ORTHO05D011532 8.6e-09 65.1 101 35.6
Thecc.05G053600 Theobroma cacao HOM05D000855 ORTHO05D008530 1.1e-08 64.7 103 34.0
AT3G09650 Arabidopsis thaliana HOM05D000855 ORTHO05D008530 1.5e-08 64.3 103 34.0
CDE07G1585 Ceratophyllum demersum HOM05D003168 ORTHO05D003590 1.5e-08 64.3 88 38.6
AUR62040505 Chenopodium quinoa HOM05D000855 ORTHO05D008530 1.5e-08 64.3 103 34.0
Oeu049309.1 Olea europaea HOM05D006999 ORTHO05D008936 1.5e-08 64.3 102 29.4
PSO339G3775 Papaver somniferum HOM05D000855 ORTHO05D008530 1.5e-08 64.3 101 33.7
PSO349G0054 Papaver somniferum HOM05D016375 ORTHO05D011376 1.5e-08 64.3 41 63.4
PGR142G0989 Punica granatum HOM05D000855 ORTHO05D008530 1.5e-08 64.3 103 32.0
TPR.G30250 Trifolium pratense HOM05D000855 ORTHO05D008530 1.5e-08 64.3 104 33.7
MSTRG.19138 Avicennia marina HOM05D000855 ORTHO05D008530 1.9e-08 63.9 98 31.6
EL10Ac7g17347 Beta vulgaris HOM05D000855 ORTHO05D008530 1.9e-08 63.9 103 34.0
Oeu049321.1 Olea europaea HOM05D006999 ORTHO05D008936 1.9e-08 63.9 102 29.4
AUR62042604 Chenopodium quinoa HOM05D000855 ORTHO05D008530 2.5e-08 63.5 103 34.0
THA.LOC104820394 Tarenaya hassleriana HOM05D000175 ORTHO05D010751 2.5e-08 63.5 100 30.0
GSVIVG01025536001 Vitis vinifera HOM05D000855 ORTHO05D008530 2.5e-08 63.5 103 34.0
BcaC04g22583 Brassica carinata HOM05D000162 ORTHO05D024264 3.3e-08 63.2 103 33.0
SalBow3G1200 Salvia bowleyana HOM05D000855 ORTHO05D008530 3.3e-08 63.2 103 31.1
SalBow3G1712 Salvia bowleyana HOM05D000855 ORTHO05D008530 3.3e-08 63.2 103 31.1
Ah.03g139350 Amaranthus hybridus HOM05D000891 ORTHO05D000761 4.3e-08 62.8 97 34.0
Cfa017505 Carpinus fangiana HOM05D000855 ORTHO05D008530 4.3e-08 62.8 103 33.0
Haze_20657 Corylus avellana HOM05D000855 ORTHO05D008530 4.3e-08 62.8 103 33.0
Actinidia04698 Actinidia chinensis HOM05D000855 ORTHO05D008530 5.6e-08 62.4 103 34.0
CAN.G930.13 Capsicum annuum HOM05D007173 ORTHO05D009151 5.6e-08 62.4 101 35.6
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 5.6e-08 62.4 104 33.7
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 5.6e-08 62.4 106 27.4
Nn2g12986 Nelumbo nucifera HOM05D000855 ORTHO05D008530 7.3e-08 62.0 103 33.0
Ah.08g211930 Amaranthus hybridus HOM05D000855 ORTHO05D008530 9.5e-08 61.6 103 32.0
ATR0208G029 Amborella trichopoda HOM05D007937 ORTHO05D010000 9.5e-08 61.6 103 33.0
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 9.5e-08 61.6 106 27.4
Sed0002743 Sechium edule HOM05D000104 ORTHO05D009920 9.5e-08 61.6 104 31.7
Sc20g0004090 Simmondsia chinensis HOM05D000855 ORTHO05D008530 9.5e-08 61.6 103 33.0
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 1.6e-07 60.8 104 34.6
Gohir.A12G066700 Gossypium hirsutum HOM05D006999 ORTHO05D008936 1.6e-07 60.8 102 29.4
PSO675G4287 Papaver somniferum HOM05D008994 ORTHO05D010954 1.6e-07 60.8 51 58.8
Zm00001eb230400 Zea mays HOM05D000104 ORTHO05D009920 1.6e-07 60.8 101 35.6
Dinv35708 Davidia involucrata HOM05D000855 ORTHO05D008530 2.1e-07 60.5 103 34.0
PSO017G3094 Papaver somniferum HOM05D010315 ORTHO05D011376 2.1e-07 60.5 45 64.4
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 2.1e-07 60.5 113 31.0
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 2.1e-07 60.5 113 31.0
Ca_24822_v3 Cicer arietinum L. HOM05D006999 ORTHO05D008936 2.8e-07 60.1 102 29.4
Gohir.D12G067100 Gossypium hirsutum HOM05D006999 ORTHO05D008936 2.8e-07 60.1 102 29.4
Gorai.008G070500 Gossypium raimondii HOM05D006999 ORTHO05D008936 2.8e-07 60.1 102 29.4
Lj4P134T41 Lonicera japonica HOM05D006999 ORTHO05D008936 2.8e-07 60.1 102 27.5
Dinv26815 Davidia involucrata HOM05D000891 ORTHO05D000761 4.7e-07 59.3 103 30.1
Duzib093G1875 Durio zibethinus HOM05D000855 ORTHO05D008530 4.7e-07 59.3 103 33.0
Thecc.01G043300 Theobroma cacao HOM05D006999 ORTHO05D008936 4.7e-07 59.3 102 27.5
CDE06G1092 Ceratophyllum demersum HOM05D007570 ORTHO05D008530 6.2e-07 58.9 94 30.9
COL.COLO4_19503 Corchorus olitorius HOM05D002825 ORTHO05D003824 6.2e-07 58.9 96 31.2
Lj2g0003627 Lotus japonicus HOM05D006999 ORTHO05D008936 6.2e-07 58.9 102 28.4
PSO732G0225 Papaver somniferum HOM05D000162 ORTHO05D000090 6.2e-07 58.9 43 65.1
PSO732G0549 Papaver somniferum HOM05D016375 ORTHO05D011376 6.2e-07 58.9 43 65.1
QL02p059847 Quercus lobata HOM05D000001 ORTHO05D010426 6.2e-07 58.9 98 34.7
Eucgr.I02485 Eucalyptus grandis HOM05D006999 ORTHO05D008936 8.0e-07 58.5 102 29.4
EL10Ac9g22193 Beta vulgaris HOM05D025815 ORTHO05D018419 1.1e-06 58.2 79 35.4
Thhalv10011454m.g Eutrema salsugineum HOM05D002453 ORTHO05D008746 1.1e-06 58.2 95 36.8
MBI06_g36048_MAGBIO Magnolia biondii HOM05D061321 ORTHO05D035148 1.1e-06 58.2 99 29.3
Psat5g012240 Pisum sativum HOM05D000424 ORTHO05D000355 1.1e-06 58.2 103 32.0
GSVIVG01019040001 Vitis vinifera HOM05D006999 ORTHO05D008936 1.1e-06 58.2 98 30.6
Actinidia36538 Actinidia chinensis HOM05D006999 ORTHO05D008936 1.4e-06 57.8 102 28.4
CSS0013853 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D008530 1.4e-06 57.8 103 32.0
CSS0023086 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D008530 1.4e-06 57.8 103 32.0
Duzib128G0132 Durio zibethinus HOM05D002825 ORTHO05D003824 1.4e-06 57.8 96 30.2
HanXRQChr04g0104281 Helianthus annuus HOM05D016049 ORTHO05D019812 1.4e-06 57.8 64 45.3
MSTRG.23543 Avicennia marina HOM05D000891 ORTHO05D000761 1.8e-06 57.4 104 27.9
BcaB03g11740 Brassica carinata HOM05D000162 ORTHO05D003288 1.8e-06 57.4 100 35.0
Glyma.06G020900 Glycine max HOM05D000424 ORTHO05D000355 1.8e-06 57.4 103 31.1
Manes.13G134700 Manihot esculenta HOM05D006999 ORTHO05D008936 1.8e-06 57.4 102 27.5
Potri.019G062332 Populus trichocarpa HOM05D024593 ORTHO05D010307 1.8e-06 57.4 90 32.2
PGR031G1904 Punica granatum HOM05D007570 ORTHO05D009365 1.8e-06 57.4 89 33.7
SGA_v2.0_scaffold63G21630 Striga asiatica HOM05D005622 ORTHO05D002854 1.8e-06 57.4 131 26.0
EL10Ac6g14123 Beta vulgaris HOM05D005949 ORTHO05D006945 2.3e-06 57.0 100 34.0
PSO675G6846 Papaver somniferum HOM05D040718 ORTHO05D011376 2.3e-06 57.0 37 67.6
PSO675G7582 Papaver somniferum HOM05D000162 ORTHO05D000090 2.3e-06 57.0 41 68.3
Solyc02g085650.4 Solanum lycopersicum HOM05D001985 ORTHO05D000761 2.3e-06 57.0 98 31.6
Thecc.10G188300 Theobroma cacao HOM05D002825 ORTHO05D003824 2.3e-06 57.0 96 30.2
Aqoxy4G03187 Aquilegia oxysepala HOM05D000855 ORTHO05D008530 3.1e-06 56.6 99 30.3
AUR62000678 Chenopodium quinoa HOM05D000162 ORTHO05D003288 3.1e-06 56.6 70 38.6
Gohir.A05G405100 Gossypium hirsutum HOM05D002825 ORTHO05D003824 3.1e-06 56.6 96 30.2
PSO017G1775 Papaver somniferum HOM05D000162 ORTHO05D000090 3.1e-06 56.6 45 66.7
TAR362G0788 Trochodendron aralioides HOM05D000162 ORTHO05D003288 3.1e-06 56.6 66 36.4
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 3.1e-06 56.6 97 33.0
Dinv44640 Davidia involucrata HOM05D010002 ORTHO05D016273 4.0e-06 56.2 97 34.0
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 4.0e-06 56.2 103 31.1
MD01G1097600 Malus domestica HOM05D006232 ORTHO05D007746 4.0e-06 56.2 96 31.2
PSO675G4157 Papaver somniferum HOM05D008994 ORTHO05D010954 4.0e-06 56.2 43 69.8
Prupe.6G195700 Prunus persica HOM05D009709 ORTHO05D003288 4.0e-06 56.2 69 42.0
SalBow6G6399 Salvia bowleyana HOM05D000001 ORTHO05D009373 4.0e-06 56.2 96 35.4
Thecc.02G097300 Theobroma cacao HOM05D006858 ORTHO05D008767 4.0e-06 56.2 84 29.8
VMungo1383G3318 Vigna mungo HOM05D000855 ORTHO05D019456 4.0e-06 56.2 117 27.4
Atru.chr1.3911 Acer truncatum HOM05D000001 ORTHO05D011283 5.2e-06 55.8 86 39.5
arahy.Tifrunner.gnm1.ann1.73FGCJ Arachis hypogaea HOM05D000001 ORTHO05D000003 5.2e-06 55.8 96 34.4
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 5.2e-06 55.8 105 27.6
Ciclev10005379m.g Citrus clementina HOM05D000424 ORTHO05D000355 5.2e-06 55.8 88 31.8
FvH4_3g42430 Fragaria vesca HOM05D000162 ORTHO05D000090 5.2e-06 55.8 90 34.4
PSO675G1784 Papaver somniferum HOM05D016375 ORTHO05D011376 5.2e-06 55.8 44 65.9
Phvul.009G019800 Phaseolus vulgaris HOM05D000424 ORTHO05D000355 5.2e-06 55.8 103 30.1
Sc03g0004000 Simmondsia chinensis HOM05D006556 ORTHO05D008146 5.2e-06 55.8 100 34.0
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 5.2e-06 55.8 98 31.6
SGA_v2.0_scaffold62G21537 Striga asiatica HOM05D006999 ORTHO05D008936 5.2e-06 55.8 98 27.6
CSS0006454 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 6.8e-06 55.5 84 29.8
CSS0039062 Camellia sinensis var. sinensis HOM05D006556 ORTHO05D008146 6.8e-06 55.5 85 36.5
CSS0049463 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 6.8e-06 55.5 84 29.8
Ciclev10000271m.g Citrus clementina HOM05D002825 ORTHO05D003824 6.8e-06 55.5 97 30.9
Duzib147G0594 Durio zibethinus HOM05D006999 ORTHO05D008936 6.8e-06 55.5 102 26.5
Hma1.2p1_0052F.1_g029920 Hydrangea macrophylla HOM05D002825 ORTHO05D003824 6.8e-06 55.5 96 32.3
Medtr3g114700 Medicago truncatula HOM05D000424 ORTHO05D000355 6.8e-06 55.5 103 32.0
Os01g0908800 Oryza sativa ssp. japonica HOM05D006980 ORTHO05D008704 6.8e-06 55.5 89 31.5
Os03g0635000 Oryza sativa ssp. japonica HOM05D000001 ORTHO05D006238 6.8e-06 55.5 102 34.3
PSO063G5753 Papaver somniferum HOM05D010315 ORTHO05D011376 6.8e-06 55.5 40 70.0
SMO353G0384 Selaginella moellendorffii HOM05D017046 ORTHO05D020998 6.8e-06 55.5 94 33.0
TPR.G38108 Trifolium pratense HOM05D000424 ORTHO05D000355 6.8e-06 55.5 103 32.0
VMungo1309G1540 Vigna mungo HOM05D000424 ORTHO05D000355 6.8e-06 55.5 103 30.1
CiPaw.01G035200 Carya illinoinensis HOM05D000891 ORTHO05D000761 8.9e-06 55.1 103 29.1
ClCG10G020580 Citrullus lanatus HOM05D001673 ORTHO05D002312 8.9e-06 55.1 94 33.0
Haze_14074 Corylus avellana HOM05D002460 ORTHO05D002716 8.9e-06 55.1 100 35.0
DCAR_003849 Daucus carota HOM05D000855 ORTHO05D008530 8.9e-06 55.1 94 30.9
PSO210G3135 Papaver somniferum HOM05D008994 ORTHO05D010954 8.9e-06 55.1 28 82.1
RhsimUnG0118600 Rhododendron simsii HOM05D000855 ORTHO05D008530 8.9e-06 55.1 94 33.0
SMO364G0438 Selaginella moellendorffii HOM05D000855 ORTHO05D008530 8.9e-06 55.1 98 34.7
SGA_v2.0_scaffold32G13356 Striga asiatica HOM05D005622 ORTHO05D002854 8.9e-06 55.1 131 25.2
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 8.9e-06 55.1 100 33.0


User provided reference genes

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