Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 6.9e-182 640.6 340 100.0
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 3.7e-175 618.2 345 96.8
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 8.3e-127 457.6 322 76.1
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 8.3e-127 457.6 322 76.1
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 2.1e-125 453.0 330 74.8
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 7.8e-125 451.1 321 73.2
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 3.3e-123 445.7 318 73.3
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 4.7e-122 441.8 332 69.9
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 1.4e-121 440.3 322 76.4
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 2.2e-119 433.0 322 69.3
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 2.2e-119 433.0 313 70.0
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 2.9e-119 432.6 318 73.0
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 2.9e-119 432.6 317 71.6
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 3.7e-119 432.2 321 69.5
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 3.7e-119 432.2 323 71.8
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 6.4e-119 431.4 322 73.0
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 6.4e-119 431.4 317 71.6
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 2.4e-118 429.5 317 71.9
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 9.2e-118 427.6 345 67.0
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 1.2e-117 427.2 329 68.7
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 1.6e-117 426.8 344 64.2
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 2.1e-117 426.4 328 70.4
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 3.5e-117 425.6 327 68.2
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 3.5e-117 425.6 347 70.9
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 4.6e-117 425.2 336 67.3
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 4.6e-117 425.2 312 69.9
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 6.0e-117 424.9 328 71.3
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 6.0e-117 424.9 327 71.9
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 1.0e-116 424.1 316 68.7
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 1.3e-116 423.7 313 73.8
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 1.7e-116 423.3 312 72.4
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.3e-116 422.9 349 65.3
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 6.6e-116 421.4 318 72.6
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 8.6e-116 421.0 340 68.2
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 8.6e-116 421.0 342 69.0
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.5e-115 420.2 342 68.4
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 1.5e-115 420.2 340 67.1
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 1.5e-115 420.2 316 67.4
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 2.5e-115 419.5 339 64.0
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 2.5e-115 419.5 343 69.7
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 3.3e-115 419.1 335 67.2
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 3.3e-115 419.1 312 73.1
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 4.3e-115 418.7 316 73.7
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 7.3e-115 417.9 314 71.3
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 1.2e-114 417.2 343 68.8
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 1.6e-114 416.8 316 68.0
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 1.6e-114 416.8 343 66.8
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 2.1e-114 416.4 336 71.4
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 2.8e-114 416.0 344 68.6
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 2.8e-114 416.0 319 68.7
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 3.6e-114 415.6 348 64.1
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 3.6e-114 415.6 311 70.7
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 4.7e-114 415.2 344 68.0
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 6.2e-114 414.8 335 66.3
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.1e-113 414.1 311 71.1
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.1e-113 414.1 309 68.0
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 2.4e-113 412.9 322 66.1
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 5.2e-113 411.8 318 69.8
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 8.9e-113 411.0 312 71.5
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 2.0e-112 409.8 320 70.3
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 2.6e-112 409.5 311 70.1
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 2.6e-112 409.5 311 70.1
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 7.6e-112 407.9 355 67.0
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 7.6e-112 407.9 339 69.3
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 1.3e-111 407.1 325 69.2
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 2.2e-111 406.4 315 66.0
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.9e-111 406.0 309 69.6
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 3.8e-111 405.6 355 61.4
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 3.8e-111 405.6 309 69.6
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 6.4e-111 404.8 319 68.0
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 6.4e-111 404.8 341 68.6
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 8.4e-111 404.4 330 64.2
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 1.1e-110 404.1 341 64.5
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 2.4e-110 402.9 340 64.4
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 2.4e-110 402.9 333 68.5
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 4.2e-110 402.1 330 64.8
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 1.6e-109 400.2 344 65.1
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 2.7e-109 399.4 338 63.3
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 2.7e-109 399.4 316 63.9
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 2.7e-109 399.4 335 63.3
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 6.0e-109 398.3 330 64.8
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 6.0e-109 398.3 318 65.4
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 1.0e-108 397.5 245 79.2
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 5.1e-108 395.2 315 66.3
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 7.3e-107 391.3 329 69.0
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 9.6e-107 391.0 318 64.2
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 1.6e-106 390.2 314 69.4
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 2.1e-106 389.8 317 69.7
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 4.0e-105 385.6 296 69.9
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 5.3e-105 385.2 317 65.9
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 2.6e-104 382.9 345 60.0
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 5.8e-104 381.7 342 65.8
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 2.2e-103 379.8 291 66.7
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 1.1e-102 377.5 329 67.5
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 1.4e-102 377.1 311 63.0
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 1.3e-98 364.0 284 71.8
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 1.6e-98 363.6 315 61.6
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 2.8e-98 362.8 322 59.0
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 4.8e-98 362.1 318 62.3
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 1.1e-97 360.9 295 65.1
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 3.1e-97 359.4 297 65.0
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 5.3e-97 358.6 326 57.7
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 6.9e-97 358.2 289 67.5
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 9.0e-97 357.8 304 63.5
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 2.0e-96 356.7 322 66.1
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 4.5e-96 355.5 315 60.0
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 5.8e-96 355.1 223 80.3
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.4e-94 350.5 248 74.2
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 2.4e-94 349.7 296 65.9
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 1.3e-92 344.0 295 64.1
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.3e-92 343.2 334 63.5
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 6.7e-92 341.7 311 66.9
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 1.9e-91 340.1 319 61.8
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 4.0e-89 332.4 326 62.9
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 7.6e-88 328.2 225 72.0
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 1.4e-86 323.9 272 70.6
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 1.9e-83 313.5 284 60.2
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 2.8e-82 309.7 284 59.5
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 3.7e-82 309.3 331 51.7
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 5.3e-81 305.4 221 68.8
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 3.2e-78 296.2 229 66.4
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 5.9e-72 275.4 232 62.1
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.9e-71 273.1 287 56.4
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.6e-69 267.3 163 81.6
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 6.7e-68 261.9 295 53.2
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 3.3e-67 259.6 280 50.7
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.1e-65 254.6 229 62.0
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 2.6e-64 250.0 236 60.6
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 3.8e-63 246.1 231 53.2
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 5.0e-63 245.7 173 66.5
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 9.4e-62 241.5 203 62.1
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 2.8e-58 229.9 297 54.2
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 1.5e-56 224.2 224 58.0
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 5.9e-56 222.2 140 77.1
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 3.8e-55 219.5 221 58.4
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 6.5e-55 218.8 213 56.3
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 6.5e-55 218.8 213 56.3
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 1.5e-54 217.6 223 54.7
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 3.2e-54 216.5 222 49.1
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 1.2e-53 214.5 233 54.1
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 4.0e-52 209.5 187 64.7
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 2.2e-50 203.8 225 53.8
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 4.8e-50 202.6 138 73.2
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 5.0e-47 192.6 197 61.9
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 1.6e-45 187.6 372 41.4
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 1.3e-42 177.9 118 83.1
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 8.5e-39 165.2 151 50.3
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 2.5e-38 163.7 161 51.6
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 9.4e-38 161.8 137 58.4
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 4.9e-34 149.4 247 34.4
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 6.3e-34 149.1 111 62.2
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 4.5e-32 142.9 157 47.1
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 1.0e-31 141.7 175 46.9
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 1.0e-31 141.7 175 46.9
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 2.3e-31 140.6 175 46.9
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 7.5e-27 125.6 186 48.9
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 1.4e-25 121.3 83 77.1
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 3.3e-22 110.2 287 42.9
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 3.3e-22 110.2 125 48.0
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 3.3e-22 110.2 97 55.7
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 9.5e-22 108.6 84 61.9
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 1.8e-20 104.4 63 66.7
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 5.2e-20 102.8 65 66.2
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 1.2e-19 101.7 97 46.4
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 3.4e-19 100.1 111 55.9
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 4.4e-19 99.8 63 66.7
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 1.7e-18 97.8 62 66.1
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 1.7e-18 97.8 62 66.1
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 4.9e-18 96.3 65 60.0
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 8.3e-18 95.5 62 64.5
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 1.1e-17 95.1 65 61.5
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 1.4e-17 94.7 169 44.4
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 1.2e-16 91.7 67 59.7
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 1.2e-16 91.7 67 59.7
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 1.7e-15 87.8 63 60.3
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 1.7e-15 87.8 63 60.3
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 2.5e-14 84.0 81 53.1
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 5.6e-14 82.8 112 36.6
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 7.3e-14 82.4 177 36.7
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 2.1e-13 80.9 103 52.4
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.4e-09 68.2 58 67.2
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 1.5e-06 58.2 105 45.7
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 2.5e-06 57.4 102 48.0


User provided reference genes

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