Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G1028 Papaver somniferum HOM05D000516 ORTHO05D000409 2.9e-100 368.6 192 100.0
BolC8t52625H Brassica oleracea HOM05D000516 ORTHO05D000409 1.8e-09 67.0 96 37.5
AL1G16860 Arabidopsis lyrata HOM05D000516 ORTHO05D000409 4.0e-09 65.9 96 36.5
AT1G06850 Arabidopsis thaliana HOM05D000516 ORTHO05D000409 4.0e-09 65.9 96 36.5
Carub.0001s0616 Capsella rubella HOM05D000516 ORTHO05D000409 4.0e-09 65.9 96 36.5
Lj1g0000054 Lotus japonicus HOM05D000516 ORTHO05D000409 4.0e-09 65.9 114 34.2
BcaC07g42044 Brassica carinata HOM05D000516 ORTHO05D000409 5.2e-09 65.5 96 36.5
A09p66750 Brassica napus HOM05D000516 ORTHO05D000409 5.2e-09 65.5 96 36.5
C08p50970 Brassica napus HOM05D000516 ORTHO05D000409 5.2e-09 65.5 96 36.5
BraA09t42013Z Brassica rapa HOM05D000516 ORTHO05D000409 5.2e-09 65.5 96 36.5
CARHR006540 Cardamine hirsuta HOM05D000516 ORTHO05D000409 5.2e-09 65.5 96 36.5
Thhalv10008146m.g Eutrema salsugineum HOM05D000516 ORTHO05D000409 5.2e-09 65.5 96 36.5
Sp1g05580 Schrenkiella parvula HOM05D000516 ORTHO05D000409 5.2e-09 65.5 96 36.5
BcaC07g42539 Brassica carinata HOM05D000516 ORTHO05D000409 6.8e-09 65.1 96 36.5
Actinidia34493 Actinidia chinensis HOM05D000516 ORTHO05D000409 1.2e-08 64.3 152 28.3
CSS0010085 Camellia sinensis var. sinensis HOM05D000516 ORTHO05D000409 2.6e-08 63.2 83 37.3
Aa31LG1G7940 Aethionema arabicum HOM05D000516 ORTHO05D000409 3.4e-08 62.8 96 35.4
Oeu035037.1 Olea europaea HOM05D000516 ORTHO05D000409 3.4e-08 62.8 89 36.0
Hma1.2p1_0292F.1_g115940 Hydrangea macrophylla HOM05D000516 ORTHO05D000409 4.4e-08 62.4 108 32.4
GSVIVG01024562001 Vitis vinifera HOM05D000516 ORTHO05D000409 4.4e-08 62.4 99 36.4
Nitab4.5_0001870g0010 Nicotiana tabacum HOM05D000516 ORTHO05D000409 5.8e-08 62.0 114 32.5
Peaxi162Scf00739g00324 Petunia axillaris HOM05D000516 ORTHO05D000409 5.8e-08 62.0 109 33.9
THA.LOC104803207 Tarenaya hassleriana HOM05D000516 ORTHO05D000409 5.8e-08 62.0 107 32.7
A08p35870 Brassica napus HOM05D000516 ORTHO05D000409 7.5e-08 61.6 96 34.4
BolC8t47066H Brassica oleracea HOM05D000516 ORTHO05D000409 7.5e-08 61.6 96 34.4
BraA08t35494Z Brassica rapa HOM05D000516 ORTHO05D000409 7.5e-08 61.6 96 34.4
Cpa.g.sc2.298 Carica papaya HOM05D000516 ORTHO05D000409 7.5e-08 61.6 87 36.8
Glyma.04G222200 Glycine max HOM05D000516 ORTHO05D000409 7.5e-08 61.6 113 31.0
Potri.019G130000 Populus trichocarpa HOM05D000516 ORTHO05D000409 7.5e-08 61.6 87 36.8
SGA_v2.0_scaffold384G50435 Striga asiatica HOM05D000516 ORTHO05D000409 7.5e-08 61.6 103 34.0
DCAR_019806 Daucus carota HOM05D000516 ORTHO05D000409 9.8e-08 61.2 89 36.0
Medtr3g094020 Medicago truncatula HOM05D000516 ORTHO05D000409 9.8e-08 61.2 114 31.6
Oeu054419.1 Olea europaea HOM05D000516 ORTHO05D000409 9.8e-08 61.2 89 36.0
Thecc.09G363600 Theobroma cacao HOM05D000516 ORTHO05D000409 9.8e-08 61.2 87 36.8
AUR62009733 Chenopodium quinoa HOM05D000516 ORTHO05D000409 1.3e-07 60.8 110 32.7
Psat5g069200 Pisum sativum HOM05D000516 ORTHO05D000409 1.3e-07 60.8 109 33.0
MSTRG.8376 Avicennia marina HOM05D000516 ORTHO05D000409 1.7e-07 60.5 114 31.6
AUR62036211 Chenopodium quinoa HOM05D000516 ORTHO05D000409 1.7e-07 60.5 87 35.6
Haze_17353 Corylus avellana HOM05D000516 ORTHO05D000409 1.7e-07 60.5 89 36.0
ECA238G1336 Erigeron canadensis HOM05D000516 ORTHO05D000409 1.7e-07 60.5 108 31.5
Hma1.2p1_2182F.1_g316305 Hydrangea macrophylla HOM05D000516 ORTHO05D000409 1.7e-07 60.5 108 31.5
Lalb_Chr11g0067811 Lupinus albus HOM05D000516 ORTHO05D000409 1.7e-07 60.5 121 29.8
Manes.18G126808 Manihot esculenta HOM05D000516 ORTHO05D000409 1.7e-07 60.5 87 35.6
Sopen07g027590 Solanum pennellii HOM05D000516 ORTHO05D000409 1.7e-07 60.5 89 34.8
GSVIVG01032683001 Vitis vinifera HOM05D000516 ORTHO05D000409 1.7e-07 60.5 89 34.8
Aqoxy2G00695 Aquilegia oxysepala HOM05D000516 ORTHO05D000409 2.2e-07 60.1 114 31.6
Cpa.g.sc19.62 Carica papaya HOM05D000516 ORTHO05D000409 2.2e-07 60.1 89 33.7
CiPaw.01G306300 Carya illinoinensis HOM05D000516 ORTHO05D000409 2.2e-07 60.1 87 35.6
Eucgr.J00119 Eucalyptus grandis HOM05D000516 ORTHO05D000409 2.2e-07 60.1 89 34.8
FAN03G0936 Fragaria x ananassa HOM05D000516 ORTHO05D000409 2.2e-07 60.1 89 36.0
Glyma.11G186700 Glycine max HOM05D000516 ORTHO05D000409 2.2e-07 60.1 87 35.6
HanXRQChr07g0203701 Helianthus annuus HOM05D000516 ORTHO05D000409 2.2e-07 60.1 113 30.1
HanXRQChr09g0261991 Helianthus annuus HOM05D000516 ORTHO05D000409 2.2e-07 60.1 108 31.5
QL08p064787 Quercus lobata HOM05D000516 ORTHO05D000409 2.2e-07 60.1 89 34.8
Hund05052 Selenicereus undatus HOM05D000516 ORTHO05D000409 2.2e-07 60.1 87 35.6
Hund29420 Selenicereus undatus HOM05D000516 ORTHO05D000409 2.2e-07 60.1 87 35.6
TWI79G1748 Tripterygium wilfordii HOM05D000516 ORTHO05D000409 2.2e-07 60.1 87 35.6
EL10Ac7g15851 Beta vulgaris HOM05D000516 ORTHO05D000409 2.9e-07 59.7 87 35.6
MELO3C020145.2 Cucumis melo HOM05D000516 ORTHO05D000409 2.9e-07 59.7 83 37.3
CsaV3_5G010910 Cucumis sativus L. HOM05D000516 ORTHO05D000409 2.9e-07 59.7 83 37.3
FAN10G2188 Fragaria x ananassa HOM05D000516 ORTHO05D000409 2.9e-07 59.7 89 36.0
Gohir.A06G179400 Gossypium hirsutum HOM05D000516 ORTHO05D000409 2.9e-07 59.7 92 32.6
Lsat_1_v5_gn_9_59881 Lactuca sativa HOM05D000516 ORTHO05D000409 2.9e-07 59.7 108 31.5
Lj1C966G14 Lonicera japonica HOM05D000516 ORTHO05D000409 2.9e-07 59.7 108 32.4
Phvul.009G142900 Phaseolus vulgaris HOM05D000516 ORTHO05D000409 2.9e-07 59.7 113 29.2
VMungo1309G2402 Vigna mungo HOM05D000516 ORTHO05D000409 2.9e-07 59.7 113 29.2
Aqoxy4G02404 Aquilegia oxysepala HOM05D000516 ORTHO05D000409 3.7e-07 59.3 114 32.5
AL4G38490 Arabidopsis lyrata HOM05D000516 ORTHO05D000409 3.7e-07 59.3 89 33.7
AT2G40620 Arabidopsis thaliana HOM05D000516 ORTHO05D000409 3.7e-07 59.3 89 33.7
Carub.0004s2291 Capsella rubella HOM05D000516 ORTHO05D000409 3.7e-07 59.3 89 33.7
Migut.F01247 Erythranthe guttata HOM05D000516 ORTHO05D000409 3.7e-07 59.3 89 34.8
Thhalv10016819m.g Eutrema salsugineum HOM05D000516 ORTHO05D000409 3.7e-07 59.3 89 33.7
FvH4_7g25870 Fragaria vesca HOM05D000516 ORTHO05D000409 3.7e-07 59.3 89 36.0
FAN06G1028 Fragaria x ananassa HOM05D000516 ORTHO05D000409 3.7e-07 59.3 89 36.0
Oeu006053.1 Olea europaea HOM05D000516 ORTHO05D000409 3.7e-07 59.3 155 30.3
Potri.013G091400 Populus trichocarpa HOM05D000516 ORTHO05D000409 3.7e-07 59.3 100 31.0
RcHm_v2.0_Chr1g0372151 Rosa chinensis HOM05D000516 ORTHO05D000409 3.7e-07 59.3 89 36.0
Sed0026670 Sechium edule HOM05D000516 ORTHO05D000409 3.7e-07 59.3 83 37.3
Aa31LG3G1500 Aethionema arabicum HOM05D000516 ORTHO05D000409 4.9e-07 58.9 80 37.5
Ah.08g215500 Amaranthus hybridus HOM05D000516 ORTHO05D000409 4.9e-07 58.9 87 34.5
C08p02700 Brassica napus HOM05D000516 ORTHO05D000409 4.9e-07 58.9 96 33.3
Duzib168G1427 Durio zibethinus HOM05D000516 ORTHO05D000409 4.9e-07 58.9 87 35.6
Migut.F00604 Erythranthe guttata HOM05D000516 ORTHO05D000409 4.9e-07 58.9 89 34.8
Gohir.D06G186400 Gossypium hirsutum HOM05D000516 ORTHO05D000409 4.9e-07 58.9 87 34.5
Gorai.010G218700 Gossypium raimondii HOM05D000516 ORTHO05D000409 4.9e-07 58.9 87 34.5
MD07G1233200 Malus domestica HOM05D000516 ORTHO05D000409 4.9e-07 58.9 107 32.7
Psat2g051040 Pisum sativum HOM05D000516 ORTHO05D000409 4.9e-07 58.9 83 37.3
Potri.013G156900 Populus trichocarpa HOM05D000516 ORTHO05D000409 4.9e-07 58.9 87 35.6
Sp4g22950 Schrenkiella parvula HOM05D000516 ORTHO05D000409 4.9e-07 58.9 89 33.7
BcaB06g29157 Brassica carinata HOM05D000516 ORTHO05D000409 6.4e-07 58.5 89 32.6
BcaC02g07325 Brassica carinata HOM05D000516 ORTHO05D000409 6.4e-07 58.5 89 32.6
A04p31050 Brassica napus HOM05D000516 ORTHO05D000409 6.4e-07 58.5 89 32.6
A05p01830 Brassica napus HOM05D000516 ORTHO05D000409 6.4e-07 58.5 89 32.6
C04p02130 Brassica napus HOM05D000516 ORTHO05D000409 6.4e-07 58.5 89 32.6
C04p68440 Brassica napus HOM05D000516 ORTHO05D000409 6.4e-07 58.5 89 32.6
BolC4t21861H Brassica oleracea HOM05D000516 ORTHO05D000409 6.4e-07 58.5 89 32.6
BolC4t28344H Brassica oleracea HOM05D000516 ORTHO05D000409 6.4e-07 58.5 89 32.6
BraA04t18561Z Brassica rapa HOM05D000516 ORTHO05D000409 6.4e-07 58.5 89 32.6
BraA05t19181Z Brassica rapa HOM05D000516 ORTHO05D000409 6.4e-07 58.5 89 32.6
COL.COLO4_08326 Corchorus olitorius HOM05D000516 ORTHO05D000409 6.4e-07 58.5 100 31.0
Gohir.A10G179600 Gossypium hirsutum HOM05D000516 ORTHO05D000409 6.4e-07 58.5 100 31.0
Gohir.D10G186300 Gossypium hirsutum HOM05D000516 ORTHO05D000409 6.4e-07 58.5 100 31.0
Gorai.011G209200 Gossypium raimondii HOM05D000516 ORTHO05D000409 6.4e-07 58.5 100 31.0
MD01G1167000 Malus domestica HOM05D000516 ORTHO05D000409 6.4e-07 58.5 118 33.1
Sabra19G0126900 Salix brachista HOM05D000516 ORTHO05D000409 6.4e-07 58.5 87 35.6
PGSC0003DMG400016651 Solanum tuberosum HOM05D000516 ORTHO05D000409 6.4e-07 58.5 89 34.8
vmacro09962 Vaccinium macrocarpon HOM05D000516 ORTHO05D000409 6.4e-07 58.5 89 36.0
Actinidia13652 Actinidia chinensis HOM05D000516 ORTHO05D000409 8.3e-07 58.2 108 30.6
Duzib106G0885 Durio zibethinus HOM05D000516 ORTHO05D000409 8.3e-07 58.2 100 31.0
Gohir.A05G278400 Gossypium hirsutum HOM05D000516 ORTHO05D000409 8.3e-07 58.2 100 31.0
Gohir.D05G280100 Gossypium hirsutum HOM05D000516 ORTHO05D000409 8.3e-07 58.2 100 31.0
Gorai.009G293600 Gossypium raimondii HOM05D000516 ORTHO05D000409 8.3e-07 58.2 100 31.0
Nn5g26856 Nelumbo nucifera HOM05D000516 ORTHO05D000409 8.3e-07 58.2 130 30.8
PSO339G4297 Papaver somniferum HOM05D000516 ORTHO05D000409 8.3e-07 58.2 115 32.2
PSO384G1080 Papaver somniferum HOM05D000516 ORTHO05D000409 8.3e-07 58.2 115 32.2
Prupe.2G263700 Prunus persica HOM05D000516 ORTHO05D000409 8.3e-07 58.2 107 32.7
Rhsim03G0151900 Rhododendron simsii HOM05D000516 ORTHO05D000409 8.3e-07 58.2 85 36.5
Sc21g0004840 Simmondsia chinensis HOM05D000516 ORTHO05D000409 8.3e-07 58.2 87 33.3
TWI53G1259 Tripterygium wilfordii HOM05D000516 ORTHO05D000409 8.3e-07 58.2 108 33.3
TAR636G2766 Trochodendron aralioides HOM05D000516 ORTHO05D000409 8.3e-07 58.2 123 30.1
vmacro06889 Vaccinium macrocarpon HOM05D000516 ORTHO05D000409 8.3e-07 58.2 85 36.5
Actinidia27080 Actinidia chinensis HOM05D000516 ORTHO05D000409 1.1e-06 57.8 105 30.5
arahy.Tifrunner.gnm1.ann1.B9TTNC Arachis hypogaea HOM05D000516 ORTHO05D000409 1.1e-06 57.8 92 32.6
BcaC02g12727 Brassica carinata HOM05D000516 ORTHO05D000409 1.1e-06 57.8 89 32.6
CANSAT56G4430 Cannabis sativa HOM05D000516 ORTHO05D000409 1.1e-06 57.8 108 33.3
Dinv34479 Davidia involucrata HOM05D000516 ORTHO05D000409 1.1e-06 57.8 89 33.7
ECA232G1008 Erigeron canadensis HOM05D000516 ORTHO05D000409 1.1e-06 57.8 89 33.7
Eucgr.G03135 Eucalyptus grandis HOM05D000516 ORTHO05D000409 1.1e-06 57.8 107 30.8
PGR142G2076 Punica granatum HOM05D000516 ORTHO05D000409 1.1e-06 57.8 111 31.5
TWI73G1270 Tripterygium wilfordii HOM05D000516 ORTHO05D000409 1.1e-06 57.8 87 34.5
Dinv12278 Davidia involucrata HOM05D000516 ORTHO05D000409 1.4e-06 57.4 96 32.3
Hma1.2p1_0119F.1_g056940 Hydrangea macrophylla HOM05D000516 ORTHO05D000409 1.4e-06 57.4 81 37.0
Manes.10G001100 Manihot esculenta HOM05D000516 ORTHO05D000409 1.4e-06 57.4 100 29.0
Medtr5g075390 Medicago truncatula HOM05D000516 ORTHO05D000409 1.4e-06 57.4 104 32.7
Nn2g10316 Nelumbo nucifera HOM05D000516 ORTHO05D000409 1.4e-06 57.4 87 34.5
SGA_v2.0_scaffold44G16619 Striga asiatica HOM05D000516 ORTHO05D000409 1.4e-06 57.4 174 29.9
Thecc.10G181700 Theobroma cacao HOM05D000516 ORTHO05D000409 1.4e-06 57.4 100 30.0
Cc02_g05410 Coffea canephora HOM05D000516 ORTHO05D000409 2.4e-06 56.6 190 27.4
Lalb_Chr15g0085861 Lupinus albus HOM05D000516 ORTHO05D000409 2.4e-06 56.6 112 31.2
Sed0024431 Sechium edule HOM05D000516 ORTHO05D000409 2.4e-06 56.6 83 34.9
THA.LOC104824361 Tarenaya hassleriana HOM05D000516 ORTHO05D000409 2.4e-06 56.6 89 32.6
TPR.G18312 Trifolium pratense HOM05D000516 ORTHO05D000409 2.4e-06 56.6 83 36.1
Duzib114G0986 Durio zibethinus HOM05D000516 ORTHO05D000409 3.2e-06 56.2 100 29.0
Lsat_1_v5_gn_8_13621 Lactuca sativa HOM05D000516 ORTHO05D000409 3.2e-06 56.2 108 31.5
PGR044G2173 Punica granatum HOM05D000516 ORTHO05D000409 3.2e-06 56.2 109 30.3
TWI09G1184 Tripterygium wilfordii HOM05D000516 ORTHO05D000409 3.2e-06 56.2 85 32.9
TAR633G1994 Trochodendron aralioides HOM05D000516 ORTHO05D000409 4.1e-06 55.8 96 31.2
HanXRQChr08g0221531 Helianthus annuus HOM05D000516 ORTHO05D000409 9.2e-06 54.7 168 26.2
Os03g0336200 Oryza sativa ssp. japonica HOM05D000516 ORTHO05D000409 9.2e-06 54.7 100 33.0
Hund26860 Selenicereus undatus HOM05D000516 ORTHO05D000409 9.2e-06 54.7 126 30.2
TAR623G0042 Trochodendron aralioides HOM05D000516 ORTHO05D000409 9.2e-06 54.7 116 31.0
unitig_85.g27164 Utricularia gibba HOM05D000516 ORTHO05D000409 9.2e-06 54.7 89 34.8


User provided reference genes

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