Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 4.2e-285 984.2 561 100.0
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 1.2e-268 929.5 568 94.5
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 8.2e-180 634.4 458 68.1
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 2.3e-174 616.3 457 66.1
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 5.2e-174 615.1 459 66.4
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 1.1e-173 614.0 464 65.3
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 8.2e-172 607.8 460 65.7
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 1.2e-170 604.0 462 65.2
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 1.6e-170 603.6 459 65.8
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 2.0e-170 603.2 458 64.0
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 2.0e-170 603.2 453 64.2
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 3.5e-170 602.4 457 64.3
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 2.9e-169 599.4 458 64.0
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 3.8e-169 599.0 455 64.2
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 5.0e-169 598.6 457 64.3
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 4.2e-168 595.5 460 64.6
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 4.2e-168 595.5 459 63.8
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 4.7e-167 592.0 460 64.1
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 1.0e-166 590.9 458 63.3
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 5.2e-166 588.6 458 64.2
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.5e-165 587.0 449 64.4
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 2.0e-165 586.6 406 70.7
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 7.5e-165 584.7 460 62.4
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 2.2e-164 583.2 460 62.2
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 8.2e-164 581.3 471 61.8
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.1e-163 580.9 459 62.1
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 1.4e-163 580.5 468 61.3
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 4.5e-162 575.5 448 63.2
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 3.8e-161 572.4 457 63.5
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 5.0e-161 572.0 458 60.5
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 8.5e-161 571.2 413 69.5
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 1.1e-160 570.9 462 60.8
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 2.5e-160 569.7 461 64.0
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 2.5e-160 569.7 459 61.2
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 5.5e-160 568.5 461 60.3
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 7.2e-160 568.2 459 61.2
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 1.6e-159 567.0 452 62.8
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 2.7e-159 566.2 463 60.7
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 3.6e-159 565.8 461 60.5
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 8.0e-159 564.7 400 68.0
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 8.8e-158 561.2 455 61.8
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 1.2e-157 560.8 461 60.5
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 2.0e-157 560.1 458 61.1
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 4.4e-157 558.9 444 62.6
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 2.2e-156 556.6 460 60.0
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 3.7e-156 555.8 454 59.9
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 6.3e-156 555.1 416 64.9
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.1e-155 554.3 401 67.8
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 1.1e-155 554.3 459 60.1
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 1.4e-155 553.9 455 59.8
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.7e-154 549.7 462 59.3
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.7e-154 549.7 462 59.3
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 2.7e-154 549.7 459 61.7
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 5.9e-154 548.5 459 60.1
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.3e-153 547.4 460 58.9
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 2.2e-153 546.6 526 54.4
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 2.9e-153 546.2 455 59.1
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 2.9e-153 546.2 453 59.2
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 1.6e-151 540.4 435 61.1
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 3.6e-151 539.3 408 64.7
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 3.6e-151 539.3 460 58.7
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 1.4e-150 537.3 456 60.1
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.8e-150 537.0 470 58.5
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 4.0e-150 535.8 442 60.2
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 6.8e-150 535.0 452 58.8
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 6.8e-150 535.0 462 58.4
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 8.8e-150 534.6 455 58.5
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.2e-149 534.3 462 59.3
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 1.2e-149 534.3 405 65.4
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.5e-149 533.9 453 58.5
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 5.7e-149 531.9 400 65.0
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 7.5e-149 531.6 459 57.1
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 9.8e-149 531.2 450 60.7
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 1.7e-148 530.4 459 58.4
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 3.7e-148 529.3 452 59.3
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 5.4e-147 525.4 445 59.3
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 7.0e-147 525.0 469 57.6
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 2.3e-145 520.0 498 54.2
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 8.6e-145 518.1 474 56.5
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 2.5e-144 516.5 455 57.4
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 1.2e-143 514.2 459 57.1
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 8.0e-143 511.5 409 62.3
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 1.0e-142 511.1 470 57.2
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.0e-142 511.1 408 63.0
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.0e-142 511.1 409 62.3
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 1.4e-142 510.8 459 59.0
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 1.4e-142 510.8 458 57.6
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 1.8e-142 510.4 405 61.7
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 4.0e-142 509.2 405 62.0
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 8.9e-142 508.1 462 56.9
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 1.5e-141 507.3 401 61.6
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 2.0e-141 506.9 488 55.1
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 4.4e-141 505.8 462 56.5
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 1.7e-140 503.8 485 54.6
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 1.7e-140 503.8 485 54.6
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 3.7e-140 502.7 487 53.8
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 8.3e-140 501.5 405 61.2
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 2.4e-139 500.0 398 60.8
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 2.4e-139 500.0 424 59.2
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 3.2e-139 499.6 529 50.1
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 5.4e-139 498.8 448 57.6
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 5.4e-139 498.8 448 57.6
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 9.2e-139 498.0 414 60.1
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 1.6e-138 497.3 448 57.4
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 2.7e-138 496.5 463 55.7
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 5.9e-138 495.4 407 60.7
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 5.9e-138 495.4 511 52.4
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 7.8e-138 495.0 409 60.4
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 1.0e-137 494.6 434 57.8
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 1.0e-137 494.6 434 57.8
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 1.0e-137 494.6 434 57.8
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 1.0e-137 494.6 416 60.3
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 2.3e-137 493.4 347 67.1
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 5.0e-137 492.3 711 41.2
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 1.1e-136 491.1 457 56.0
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 1.1e-136 491.1 464 56.5
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 1.5e-136 490.7 457 56.0
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 1.9e-136 490.3 463 55.5
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 5.6e-136 488.8 410 62.0
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.8e-135 486.5 405 60.2
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 3.6e-135 486.1 405 61.2
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 6.2e-135 485.3 470 57.0
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 1.4e-134 484.2 437 57.4
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 1.4e-134 484.2 452 55.8
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 1.4e-134 484.2 415 60.2
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.8e-134 483.8 415 60.0
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 2.3e-134 483.4 446 57.6
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.3e-134 483.4 415 60.2
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 5.2e-134 482.3 387 60.7
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 1.5e-133 480.7 441 56.9
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 4.4e-133 479.2 454 56.2
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 7.5e-133 478.4 415 60.0
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 7.5e-133 478.4 401 58.4
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 9.8e-133 478.0 434 55.8
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 3.7e-132 476.1 394 61.2
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 3.5e-130 469.5 402 59.0
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 5.2e-126 455.7 320 69.1
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.5e-125 454.1 341 66.3
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 1.3e-124 451.1 401 54.9
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 4.9e-124 449.1 343 64.4
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 2.4e-123 446.8 597 44.1
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 1.7e-121 440.7 397 55.9
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 6.6e-121 438.7 414 52.2
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 1.6e-119 434.1 345 61.7
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.5e-112 411.0 315 63.5
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 1.8e-110 404.1 377 55.2
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 9.3e-83 312.0 259 60.6
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 2.3e-81 307.4 202 71.8
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 4.1e-78 296.6 219 62.6
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 3.9e-73 280.0 219 62.6
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 6.3e-71 272.7 235 59.1
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 4.1e-70 270.0 240 57.1
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.5e-69 268.1 250 55.6
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.1e-67 261.9 213 60.1
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 1.3e-63 248.4 313 44.1
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 6.1e-50 203.0 420 36.4
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 6.1e-50 203.0 282 40.4
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 8.8e-49 199.1 468 32.7
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 5.4e-38 163.3 267 41.2
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 8.0e-34 149.4 195 44.6
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 4.4e-32 143.7 174 48.9
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 3.5e-29 134.0 288 31.9
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 2.9e-28 131.0 653 23.0
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.3e-25 121.3 117 49.6
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 3.0e-25 120.9 118 51.7
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 5.2e-25 120.2 101 57.4
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 1.3e-20 105.5 124 49.2
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.6e-18 98.6 109 46.8
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.7e-15 88.6 103 50.5
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 5.0e-12 77.0 411 25.3
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 8.6e-12 76.3 53 58.5
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 2.6e-08 64.7 47 59.6
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 6.4e-07 60.1 204 28.4
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 1.1e-06 59.3 66 47.0


User provided reference genes

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