Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO673G0028 Papaver somniferum HOM05D003564 ORTHO05D015539 1.2e-144 516.5 264 100.0
PSO421G0363 Papaver somniferum HOM05D003564 ORTHO05D005332 5.9e-72 275.0 175 81.1
PSO673G0015 Papaver somniferum HOM05D003564 ORTHO05D005332 2.3e-71 273.1 175 80.0
PSO724G1094 Papaver somniferum HOM05D003564 ORTHO05D005332 4.3e-70 268.9 175 79.4
TWI73G0893 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 3.4e-67 259.2 224 62.9
Potri.008G102800 Populus trichocarpa HOM05D003564 ORTHO05D005332 2.2e-66 256.5 175 75.4
Hma1.2p1_0078F.1_g039870 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 6.4e-66 255.0 176 73.3
Potri.010G148100 Populus trichocarpa HOM05D003564 ORTHO05D005332 8.3e-66 254.6 175 74.9
MSTRG.21761 Avicennia marina HOM05D003564 ORTHO05D005332 7.0e-65 251.5 174 73.6
Dinv44265 Davidia involucrata HOM05D003564 ORTHO05D005332 9.2e-65 251.1 224 59.8
Prupe.1G114000 Prunus persica HOM05D003564 ORTHO05D005332 1.2e-64 250.8 224 60.7
PGR031G2439 Punica granatum HOM05D003564 ORTHO05D005332 1.6e-64 250.4 175 74.3
Sabra10G0114300 Salix brachista HOM05D003564 ORTHO05D005332 1.6e-64 250.4 175 73.7
Cpa.g.sc9.29 Carica papaya HOM05D003564 ORTHO05D005332 2.0e-64 250.0 181 71.8
SalBow5G4452 Salvia bowleyana HOM05D003564 ORTHO05D005332 4.6e-64 248.8 175 73.7
TWI09G1018 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 4.6e-64 248.8 175 72.6
MD13G1150000 Malus domestica HOM05D003564 ORTHO05D005332 7.8e-64 248.1 173 74.0
Actinidia13349 Actinidia chinensis HOM05D003564 ORTHO05D005332 1.3e-63 247.3 175 70.3
HanXRQChr05g0146131 Helianthus annuus HOM05D003564 ORTHO05D005332 1.3e-63 247.3 173 72.8
TAR633G1064 Trochodendron aralioides HOM05D003564 ORTHO05D005332 1.3e-63 247.3 224 59.8
CANSAT78G0776 Cannabis sativa HOM05D003564 ORTHO05D005332 1.7e-63 246.9 224 59.4
Aqoxy2G02668 Aquilegia oxysepala HOM05D003564 ORTHO05D005332 2.3e-63 246.5 224 60.3
Eucgr.H04065 Eucalyptus grandis HOM05D003564 ORTHO05D005332 2.3e-63 246.5 175 72.0
CSS0008875 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 3.0e-63 246.1 247 56.3
Gohir.A09G241000 Gossypium hirsutum HOM05D003564 ORTHO05D005332 3.0e-63 246.1 175 71.4
QL06p012801 Quercus lobata HOM05D003564 ORTHO05D005332 3.0e-63 246.1 175 71.4
GSVIVG01034964001 Vitis vinifera HOM05D003564 ORTHO05D005332 3.9e-63 245.7 175 71.4
MSTRG.24826 Avicennia marina HOM05D003564 ORTHO05D005332 5.0e-63 245.4 174 70.1
Hma1.2p1_1400F.1_g280900 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 5.0e-63 245.4 185 69.2
MBI19_g03266_MAGBIO Magnolia biondii HOM05D003564 ORTHO05D005332 5.0e-63 245.4 180 69.4
Dinv15142 Davidia involucrata HOM05D003564 ORTHO05D005332 6.6e-63 245.0 224 58.5
ECA246G5316 Erigeron canadensis HOM05D003564 ORTHO05D005332 6.6e-63 245.0 175 70.9
Migut.N00033 Erythranthe guttata HOM05D003564 ORTHO05D005332 6.6e-63 245.0 175 70.9
Manes.15G001800 Manihot esculenta HOM05D003564 ORTHO05D005332 6.6e-63 245.0 175 71.4
RcHm_v2.0_Chr4g0425841 Rosa chinensis HOM05D003564 ORTHO05D005332 6.6e-63 245.0 175 72.0
MD16G1150400 Malus domestica HOM05D003564 ORTHO05D005332 8.6e-63 244.6 243 57.2
Nn3g21762 Nelumbo nucifera HOM05D003564 ORTHO05D005332 8.6e-63 244.6 175 72.0
Gohir.D09G241800 Gossypium hirsutum HOM05D003564 ORTHO05D005332 1.1e-62 244.2 175 70.9
Sed0008581 Sechium edule HOM05D003564 ORTHO05D005332 1.1e-62 244.2 175 70.9
FvH4_4g20200 Fragaria vesca HOM05D003564 ORTHO05D005332 1.5e-62 243.8 175 72.0
vmacro07948 Vaccinium macrocarpon HOM05D003564 ORTHO05D005332 1.5e-62 243.8 182 69.2
Oeu027343.1 Olea europaea HOM05D003564 ORTHO05D005332 1.9e-62 243.4 173 70.5
ClCG05G006670 Citrullus lanatus HOM05D003564 ORTHO05D005332 2.5e-62 243.0 175 71.4
CiPaw.02G073000 Carya illinoinensis HOM05D003564 ORTHO05D005332 3.3e-62 242.7 175 72.0
COL.COLO4_34584 Corchorus olitorius HOM05D003564 ORTHO05D005332 3.3e-62 242.7 175 69.7
Hma1.2p1_0013F.1_g008310 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 3.3e-62 242.7 175 70.3
PGR004G2289 Punica granatum HOM05D003564 ORTHO05D005332 3.3e-62 242.7 175 72.0
MELO3C006726.2 Cucumis melo HOM05D003564 ORTHO05D005332 5.6e-62 241.9 175 70.9
FAN07G2223 Fragaria x ananassa HOM05D003564 ORTHO05D005332 5.6e-62 241.9 175 70.9
CsaV3_3G015300 Cucumis sativus L. HOM05D003564 ORTHO05D005332 7.3e-62 241.5 175 71.4
Gorai.006G265300 Gossypium raimondii HOM05D003564 ORTHO05D005332 7.3e-62 241.5 175 69.7
Lj6g0012179 Lotus japonicus HOM05D003564 ORTHO05D005332 7.3e-62 241.5 175 70.3
TAR362G0511 Trochodendron aralioides HOM05D003564 ORTHO05D005332 7.3e-62 241.5 175 71.4
CANSAT21G1208 Cannabis sativa HOM05D003564 ORTHO05D005332 9.5e-62 241.1 169 72.2
Haze_01331 Corylus avellana HOM05D003564 ORTHO05D005332 1.2e-61 240.7 224 58.5
Haze_01336 Corylus avellana HOM05D003564 ORTHO05D005332 1.2e-61 240.7 224 58.5
Manes.03G206800 Manihot esculenta HOM05D003564 ORTHO05D005332 1.2e-61 240.7 175 70.9
Thecc.04G304400 Theobroma cacao HOM05D003564 ORTHO05D005332 1.2e-61 240.7 173 71.7
EL10Ac3g05000 Beta vulgaris HOM05D003564 ORTHO05D005332 1.6e-61 240.4 175 70.9
ATR0693G053 Amborella trichopoda HOM05D003564 ORTHO05D005332 2.1e-61 240.0 175 70.3
CANSAT80G1613 Cannabis sativa HOM05D003564 ORTHO05D005332 2.1e-61 240.0 224 58.9
Peaxi162Scf00228g00614 Petunia axillaris HOM05D003564 ORTHO05D005332 4.7e-61 238.8 175 68.0
Hund11987 Selenicereus undatus HOM05D003564 ORTHO05D005332 4.7e-61 238.8 175 69.7
vmacro15172 Vaccinium macrocarpon HOM05D003564 ORTHO05D005332 4.7e-61 238.8 224 57.6
Actinidia18464 Actinidia chinensis HOM05D003564 ORTHO05D005332 6.2e-61 238.4 247 54.7
Duzib212G0473 Durio zibethinus HOM05D003564 ORTHO05D005332 6.2e-61 238.4 175 69.1
Sed0006353 Sechium edule HOM05D003564 ORTHO05D005332 6.2e-61 238.4 175 70.3
CiPaw.01G136200 Carya illinoinensis HOM05D003564 ORTHO05D005332 8.1e-61 238.0 224 58.9
Ciclev10004815m.g Citrus clementina HOM05D003564 ORTHO05D005332 8.1e-61 238.0 175 69.7
FAN12G0614 Fragaria x ananassa HOM05D003564 ORTHO05D005332 8.1e-61 238.0 179 70.4
Lj6A693T63 Lonicera japonica HOM05D003564 ORTHO05D005332 1.1e-60 237.7 175 69.7
Nitab4.5_0000655g0040 Nicotiana tabacum HOM05D003564 ORTHO05D005332 1.4e-60 237.3 175 68.6
unitig_22.g6346 Utricularia gibba HOM05D003564 ORTHO05D005332 1.8e-60 236.9 174 70.1
CSS0022249 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 2.3e-60 236.5 224 56.7
AUR62039254 Chenopodium quinoa HOM05D003564 ORTHO05D005332 2.3e-60 236.5 175 69.1
Nitab4.5_0005111g0010 Nicotiana tabacum HOM05D003564 ORTHO05D005332 2.3e-60 236.5 175 68.6
AUR62016236 Chenopodium quinoa HOM05D003564 ORTHO05D005332 3.1e-60 236.1 175 68.6
PSO210G4867 Papaver somniferum HOM05D003564 ORTHO05D005332 3.1e-60 236.1 175 68.6
Peaxi162Scf00164g00106 Petunia axillaris HOM05D003564 ORTHO05D005332 3.1e-60 236.1 175 69.1
Rhsim04G0241100 Rhododendron simsii HOM05D003564 ORTHO05D005332 3.1e-60 236.1 175 68.6
Gohir.A01G035000 Gossypium hirsutum HOM05D003564 ORTHO05D005332 6.8e-60 235.0 175 68.0
Oeu046580.1 Olea europaea HOM05D003564 ORTHO05D005332 6.8e-60 235.0 175 69.1
Gohir.D01G023559 Gossypium hirsutum HOM05D003564 ORTHO05D005332 8.9e-60 234.6 175 68.0
Gorai.002G030900 Gossypium raimondii HOM05D003564 ORTHO05D005332 8.9e-60 234.6 175 68.0
Sc13g0007180 Simmondsia chinensis HOM05D003564 ORTHO05D005332 8.9e-60 234.6 175 68.6
Ah.07g201490 Amaranthus hybridus HOM05D003564 ORTHO05D005332 2.0e-59 233.4 175 68.0
Lj3A833G36 Lonicera japonica HOM05D003564 ORTHO05D005332 2.0e-59 233.4 175 69.1
Cfa015286 Carpinus fangiana HOM05D003564 ORTHO05D005332 3.4e-59 232.6 226 58.4
Ciclev10004814m.g Citrus clementina HOM05D003564 ORTHO05D005332 3.4e-59 232.6 175 69.1
PSO761G0547 Papaver somniferum HOM05D003564 ORTHO05D005332 3.4e-59 232.6 152 78.3
Solyc01g058390.3 Solanum lycopersicum HOM05D003564 ORTHO05D005332 3.4e-59 232.6 175 66.9
PGSC0003DMG400017095 Solanum tuberosum HOM05D003564 ORTHO05D005332 4.4e-59 232.3 175 67.4
THA.LOC104818876 Tarenaya hassleriana HOM05D003564 ORTHO05D005332 4.4e-59 232.3 175 68.0
Cc03_g00640 Coffea canephora HOM05D003564 ORTHO05D005332 5.8e-59 231.9 178 67.4
Oeu001157.1 Olea europaea HOM05D003564 ORTHO05D005332 5.8e-59 231.9 173 68.2
DCAR_026993 Daucus carota HOM05D003564 ORTHO05D005332 7.5e-59 231.5 174 69.0
Lalb_Chr07g0181971 Lupinus albus HOM05D003564 ORTHO05D005332 7.5e-59 231.5 175 67.4
Sopen01g023960 Solanum pennellii HOM05D003564 ORTHO05D005332 1.3e-58 230.7 175 66.3
Nitab4.5_0004165g0030 Nicotiana tabacum HOM05D003564 ORTHO05D005332 1.7e-58 230.3 177 67.2
Sabra08G0077700 Salix brachista HOM05D003564 ORTHO05D005332 2.2e-58 229.9 228 57.0
TPR.G25421 Trifolium pratense HOM05D003564 ORTHO05D005332 2.2e-58 229.9 175 68.0
unitig_8.g3092 Utricularia gibba HOM05D001060 ORTHO05D000905 2.2e-58 229.9 175 66.9
Lsat_1_v5_gn_6_116000 Lactuca sativa HOM05D003564 ORTHO05D005332 2.9e-58 229.6 173 69.4
Zm00001eb063430 Zea mays HOM05D003564 ORTHO05D005332 2.9e-58 229.6 175 67.4
Psat4g021800 Pisum sativum HOM05D003564 ORTHO05D005332 3.7e-58 229.2 175 68.0
BraA01t04431Z Brassica rapa HOM05D003564 ORTHO05D005332 4.9e-58 228.8 175 65.7
Ca_21413_v3 Cicer arietinum L. HOM05D003564 ORTHO05D005332 4.9e-58 228.8 175 67.4
Lalb_Chr12g0200801 Lupinus albus HOM05D003564 ORTHO05D005332 4.9e-58 228.8 182 64.8
A05p41470 Brassica napus HOM05D003564 ORTHO05D005332 6.4e-58 228.4 175 65.1
Medtr4g122670 Medicago truncatula HOM05D003564 ORTHO05D005332 6.4e-58 228.4 175 67.4
BraA05t22867Z Brassica rapa HOM05D003564 ORTHO05D005332 1.1e-57 227.6 175 65.1
BNapus_Darmor_BZH_scaffold_118p00030 Brassica napus HOM05D003564 ORTHO05D001609 1.4e-57 227.3 175 64.6
Phvul.003G116700 Phaseolus vulgaris HOM05D003564 ORTHO05D005332 1.9e-57 226.9 175 66.9
SHI00111 Sapria himalayana HOM05D003564 ORTHO05D005332 1.9e-57 226.9 176 64.8
AL3G17620 Arabidopsis lyrata HOM05D003564 ORTHO05D005332 2.4e-57 226.5 175 64.0
AT3G06580 Arabidopsis thaliana HOM05D003564 ORTHO05D005332 2.4e-57 226.5 175 64.0
Rhsim02G0002600 Rhododendron simsii HOM05D003564 ORTHO05D005332 2.4e-57 226.5 224 55.8
arahy.Tifrunner.gnm1.ann1.5PE0GF Arachis hypogaea HOM05D003564 ORTHO05D005332 4.1e-57 225.7 175 66.3
C05p60630 Brassica napus HOM05D003564 ORTHO05D001609 4.1e-57 225.7 175 64.6
BolC5t34726H Brassica oleracea HOM05D003564 ORTHO05D005332 4.1e-57 225.7 175 64.6
Thhalv10020583m.g Eutrema salsugineum HOM05D003564 ORTHO05D005332 4.1e-57 225.7 175 64.6
arahy.Tifrunner.gnm1.ann1.W3XDQ4 Arachis hypogaea HOM05D003564 ORTHO05D005332 5.4e-57 225.3 175 65.7
DCAR_023360 Daucus carota HOM05D003564 ORTHO05D005332 5.4e-57 225.3 173 67.1
CARHR081120 Cardamine hirsuta HOM05D003564 ORTHO05D005332 7.1e-57 224.9 175 64.0
Sp3g05510 Schrenkiella parvula HOM05D003564 ORTHO05D005332 7.1e-57 224.9 175 64.6
VMungo1215G0911 Vigna mungo HOM05D003564 ORTHO05D005332 7.1e-57 224.9 175 65.7
BolC1t05602H Brassica oleracea HOM05D003564 ORTHO05D005332 9.2e-57 224.6 175 65.1
Carub.0003s0604 Capsella rubella HOM05D003564 ORTHO05D005332 9.2e-57 224.6 175 64.0
CAN.G281.5 Capsicum annuum HOM05D003564 ORTHO05D005332 9.2e-57 224.6 175 65.1
Os03g0832600 Oryza sativa ssp. japonica HOM05D003564 ORTHO05D005332 1.6e-56 223.8 175 67.4
Lj4g0010100 Lotus japonicus HOM05D003564 ORTHO05D005332 2.1e-56 223.4 175 65.1
SEGI_35047 Sequoiadendron giganteum HOM05D003564 ORTHO05D005332 2.7e-56 223.0 175 67.4
HPP92_001226 Vanilla planifolia HOM05D003564 ORTHO05D005332 4.6e-56 222.2 175 65.1
Atru.chr5.3350 Acer truncatum HOM05D003564 ORTHO05D005332 6.0e-56 221.9 173 64.7
Glyma.07G237700 Glycine max HOM05D003564 ORTHO05D005332 7.8e-56 221.5 175 65.1
Aa31LG5G17120 Aethionema arabicum HOM05D003564 ORTHO05D005332 1.7e-55 220.3 175 63.4
Glyma.17G035800 Glycine max HOM05D003564 ORTHO05D005332 1.7e-55 220.3 175 65.1
BraA03t12654Z Brassica rapa HOM05D003564 ORTHO05D005332 2.8e-53 213.0 175 62.3
Nitab4.5_0000647g0260 Nicotiana tabacum HOM05D003564 ORTHO05D005332 2.8e-53 213.0 206 56.3
Atru.BG.89.p Acer truncatum HOM05D003564 ORTHO05D005332 6.2e-53 211.8 225 54.2
A03p34740 Brassica napus HOM05D003564 ORTHO05D005332 6.2e-53 211.8 171 62.6
CDE01G0090 Ceratophyllum demersum HOM05D003564 ORTHO05D005332 3.1e-52 209.5 175 61.1
Hund03137 Selenicereus undatus HOM05D003564 ORTHO05D005332 3.1e-52 209.5 152 71.7
SGA_v2.0_scaffold367G50068 Striga asiatica HOM05D003564 ORTHO05D005332 6.8e-52 208.4 175 63.4
Phvul.010G104600 Phaseolus vulgaris HOM05D003564 ORTHO05D015539 8.4e-50 201.4 169 62.7
AagrBONN_evm.TU.Sc2ySwM_117.3800 Anthoceros agrestis HOM05D003564 ORTHO05D005332 2.1e-48 196.8 171 58.5
CSS0008122 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D015539 2.1e-48 196.8 152 65.1
SMO340G0013 Selaginella moellendorffii HOM05D003564 ORTHO05D005332 3.5e-48 196.1 165 61.8
CSS0033456 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D015539 6.0e-48 195.3 144 67.4
Aa31LG2G16960 Aethionema arabicum HOM05D003564 ORTHO05D005332 2.3e-47 193.4 175 58.9
Pp3c9_18770 Physcomitrium patens HOM05D003564 ORTHO05D005332 8.1e-45 184.9 160 57.5
Glyma.08G358766 Glycine max HOM05D003564 ORTHO05D015539 3.4e-43 179.5 146 63.7
Pp3c19_13990 Physcomitrium patens HOM05D003564 ORTHO05D005332 3.4e-43 179.5 162 56.2
SGA_v2.0_scaffold227G43230 Striga asiatica HOM05D003564 ORTHO05D005332 1.0e-39 167.9 164 56.1
Mapoly0046s0013 Marchantia polymorpha HOM05D003564 ORTHO05D005332 2.5e-38 163.3 173 52.0
Mapoly0068s0036 Marchantia polymorpha HOM05D003564 ORTHO05D005332 1.6e-37 160.6 174 52.9
CBR_g24145 Chara braunii HOM05D003564 ORTHO05D005332 1.2e-35 154.5 175 51.4
CAN.G311.69 Capsicum annuum HOM05D003564 ORTHO05D005332 2.9e-34 149.8 108 67.6
Lsat_1_v5_gn_2_75340 Lactuca sativa HOM05D003564 ORTHO05D015539 1.1e-33 147.9 167 49.7
Lsat_1_v5_gn_1_7420 Lactuca sativa HOM05D003564 ORTHO05D001424 1.1e-30 137.9 101 64.4
BolC3t16502H Brassica oleracea HOM05D003564 ORTHO05D005332 8.4e-26 121.7 123 52.0
PRCOL_00002578 Prasinoderma coloniale HOM05D003564 ORTHO05D005332 3.0e-23 113.2 163 42.3
MCO14G377 Micromonas commoda HOM05D003564 ORTHO05D005332 1.5e-22 110.9 178 41.6
Sopen01g020110 Solanum pennellii HOM05D003564 ORTHO05D015539 3.7e-21 106.3 78 67.9
Cre17.g732300 Chlamydomonas reinhardtii HOM05D003564 ORTHO05D005332 1.1e-20 104.8 166 39.8
Thecc.02G173700 Theobroma cacao HOM05D003564 ORTHO05D005332 1.1e-20 104.8 69 76.8
Lsat_1_v5_gn_5_163121 Lactuca sativa HOM05D003564 ORTHO05D230188 2.9e-18 96.7 90 57.8
TAR365G0167 Trochodendron aralioides HOM05D003564 ORTHO05D024794 7.9e-16 88.6 87 54.0
Actinidia14250 Actinidia chinensis HOM05D003564 ORTHO05D004310 1.3e-15 87.8 84 57.1
Hma1.2p1_0760F.1_g214160 Hydrangea macrophylla HOM05D003564 ORTHO05D015539 1.9e-14 84.0 55 69.1
Hma1.2p1_0014F.1_g009450 Hydrangea macrophylla HOM05D003564 ORTHO05D015539 5.7e-14 82.4 55 67.3
Hma1.2p1_0213F.1_g090610 Hydrangea macrophylla HOM05D003564 ORTHO05D015539 7.4e-14 82.0 55 67.3
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 7.6e-11 72.0 110 43.6
SGA_v2.0_scaffold21G09441 Striga asiatica HOM05D000207 ORTHO05D000606 4.6e-08 62.8 59 57.6
Cfa026431 Carpinus fangiana HOM05D003564 ORTHO05D005332 6.1e-08 62.4 186 31.7
HanXRQChr14g0435401 Helianthus annuus HOM05D003564 ORTHO05D015539 1.0e-07 61.6 54 55.6


User provided reference genes

Program Settings