Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 5.2e-99 364.4 186 100.0
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 2.5e-93 345.5 186 95.2
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 2.1e-84 315.8 186 89.2
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 6.2e-84 314.3 186 88.7
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 3.2e-11 72.8 59 61.0
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 9.2e-11 71.2 63 52.4
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 1.2e-10 70.9 62 51.6
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.6e-10 70.5 59 59.3
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 1.6e-10 70.5 59 59.3
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 7.8e-10 68.2 62 51.6
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 1.0e-09 67.8 63 52.4
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 1.0e-09 67.8 63 52.4
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 1.0e-09 67.8 85 43.5
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 1.3e-09 67.4 87 43.7
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 1.3e-09 67.4 85 43.5
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 1.7e-09 67.0 65 50.8
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 1.7e-09 67.0 74 47.3
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 1.7e-09 67.0 84 45.2
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 2.3e-09 66.6 63 52.4
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 2.3e-09 66.6 74 45.9
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 3.0e-09 66.2 63 49.2
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 3.0e-09 66.2 74 44.6
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 3.0e-09 66.2 63 50.8
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 3.9e-09 65.9 74 44.6
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 3.9e-09 65.9 63 46.0
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 3.9e-09 65.9 64 50.0
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 5.0e-09 65.5 74 44.6
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 5.0e-09 65.5 74 44.6
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 5.0e-09 65.5 74 44.6
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 5.0e-09 65.5 74 44.6
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 6.6e-09 65.1 74 45.9
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 6.6e-09 65.1 63 52.4
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 6.6e-09 65.1 63 52.4
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 6.6e-09 65.1 63 47.6
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 6.6e-09 65.1 74 47.3
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 6.6e-09 65.1 74 44.6
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 8.6e-09 64.7 74 43.2
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 8.6e-09 64.7 74 44.6
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 8.6e-09 64.7 74 45.9
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 8.6e-09 64.7 74 45.9
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 1.1e-08 64.3 63 47.6
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 1.1e-08 64.3 75 44.0
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 1.1e-08 64.3 66 47.0
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 1.1e-08 64.3 85 40.0
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 1.1e-08 64.3 85 40.0
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 1.1e-08 64.3 85 40.0
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 1.5e-08 63.9 74 44.6
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 1.5e-08 63.9 74 44.6
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 1.5e-08 63.9 74 44.6
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 1.5e-08 63.9 74 44.6
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 1.5e-08 63.9 74 44.6
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 1.5e-08 63.9 74 44.6
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 1.5e-08 63.9 74 44.6
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 1.5e-08 63.9 74 44.6
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 1.5e-08 63.9 74 44.6
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 1.5e-08 63.9 74 44.6
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 1.9e-08 63.5 63 49.2
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 1.9e-08 63.5 63 49.2
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 1.9e-08 63.5 63 46.0
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 1.9e-08 63.5 74 44.6
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 2.5e-08 63.2 74 44.6
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 2.5e-08 63.2 63 46.0
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 2.5e-08 63.2 63 46.0
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 3.3e-08 62.8 75 42.7
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 3.3e-08 62.8 74 44.6
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 3.3e-08 62.8 74 43.2
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 3.3e-08 62.8 75 41.3
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 3.3e-08 62.8 75 41.3
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 3.3e-08 62.8 64 45.3
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 4.3e-08 62.4 74 43.2
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 4.3e-08 62.4 74 43.2
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 4.3e-08 62.4 65 43.1
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 4.3e-08 62.4 64 50.0
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 4.3e-08 62.4 70 45.7
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 4.3e-08 62.4 70 45.7
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 4.3e-08 62.4 70 45.7
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 4.3e-08 62.4 74 43.2
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 4.3e-08 62.4 66 48.5
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 5.6e-08 62.0 63 46.0
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 5.6e-08 62.0 63 46.0
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 5.6e-08 62.0 63 46.0
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 5.6e-08 62.0 63 46.0
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 7.3e-08 61.6 74 44.6
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 7.3e-08 61.6 65 46.2
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 9.5e-08 61.2 65 47.7
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 9.5e-08 61.2 74 43.2
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 1.2e-07 60.8 63 44.4
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 1.6e-07 60.5 74 43.2
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 1.6e-07 60.5 74 43.2
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 1.6e-07 60.5 75 41.3
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 2.1e-07 60.1 63 47.6
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 3.6e-07 59.3 76 39.5
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 3.6e-07 59.3 76 39.5
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 3.6e-07 59.3 74 40.5
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 3.6e-07 59.3 75 42.7
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 6.2e-07 58.5 63 44.4
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 6.2e-07 58.5 65 41.5
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 6.2e-07 58.5 87 39.1
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 8.0e-07 58.2 76 38.2
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 8.0e-07 58.2 65 41.5
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 8.0e-07 58.2 74 39.2
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 8.0e-07 58.2 74 39.2
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.1e-06 57.8 63 47.6
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.1e-06 57.8 63 47.6
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.4e-06 57.4 150 30.0
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 3.1e-06 56.2 75 41.3
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 3.1e-06 56.2 74 41.9
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 3.1e-06 56.2 74 41.9
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 4.0e-06 55.8 62 46.8
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 5.2e-06 55.5 74 40.5


User provided reference genes

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