Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO596G0067 Papaver somniferum HOM05D004854 ORTHO05D005854 2.2e-37 159.1 124 100.0
PSO423G0052 Papaver somniferum HOM05D004854 ORTHO05D005854 1.1e-36 156.8 124 99.2
PSO596G0050 Papaver somniferum HOM05D004854 ORTHO05D005854 1.1e-25 120.2 78 79.5
PSO423G0276 Papaver somniferum HOM05D004854 ORTHO05D005854 1.5e-25 119.8 78 78.2
AL8G33260 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 1.0e-21 107.1 70 75.7
BcaC03g14166 Brassica carinata HOM05D004854 ORTHO05D005854 1.0e-21 107.1 70 75.7
BcaC04g19981 Brassica carinata HOM05D004854 ORTHO05D005854 1.0e-21 107.1 70 75.7
BcaB05g22334 Brassica carinata HOM05D004854 ORTHO05D005854 2.9e-21 105.5 70 74.3
BraA02t05931Z Brassica rapa HOM05D004854 ORTHO05D005854 2.9e-21 105.5 70 74.3
C02p14390 Brassica napus HOM05D004854 ORTHO05D005854 1.9e-20 102.8 66 75.8
BolC2t07563H Brassica oleracea HOM05D004854 ORTHO05D005854 1.9e-20 102.8 66 75.8
BolC9t57762H Brassica oleracea HOM05D004854 ORTHO05D005854 1.9e-20 102.8 66 75.8
BraA10t43555Z Brassica rapa HOM05D004854 ORTHO05D005854 1.9e-20 102.8 66 75.8
CARHR271090 Cardamine hirsuta HOM05D004854 ORTHO05D005854 1.9e-20 102.8 70 72.9
Sp6g19020 Schrenkiella parvula HOM05D004854 ORTHO05D005854 1.9e-20 102.8 70 72.9
A02p08620 Brassica napus HOM05D004854 ORTHO05D005854 4.2e-20 101.7 69 72.5
ClCG11G011930 Citrullus lanatus HOM05D004854 ORTHO05D005854 5.5e-20 101.3 70 67.1
Glyma.05G174300 Glycine max HOM05D004854 ORTHO05D005854 7.2e-20 100.9 75 68.0
Aa31LG3G13170 Aethionema arabicum HOM05D004854 ORTHO05D005854 9.4e-20 100.5 70 71.4
AL7G27120 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 9.4e-20 100.5 70 68.6
A10p14720 Brassica napus HOM05D004854 ORTHO05D005854 9.4e-20 100.5 66 74.2
C09p49130 Brassica napus HOM05D004854 ORTHO05D005854 9.4e-20 100.5 66 74.2
Carub.0008s1780 Capsella rubella HOM05D004854 ORTHO05D005854 9.4e-20 100.5 70 70.0
Thhalv10015037m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 9.4e-20 100.5 70 71.4
Atru.chr12.1305 Acer truncatum HOM05D004854 ORTHO05D005854 1.2e-19 100.1 71 69.0
AT5G57290 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 1.2e-19 100.1 65 75.4
MELO3C003999.2 Cucumis melo HOM05D004854 ORTHO05D005854 1.6e-19 99.8 70 65.7
AT4G25890 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 2.1e-19 99.4 70 68.6
Glyma.08G131500 Glycine max HOM05D004854 ORTHO05D005854 2.1e-19 99.4 75 66.7
SGA_v2.0_scaffold21G09635 Striga asiatica HOM05D004854 ORTHO05D005854 2.7e-19 99.0 78 65.4
Actinidia29956 Actinidia chinensis HOM05D004854 ORTHO05D005854 3.6e-19 98.6 73 64.4
Migut.J00819 Erythranthe guttata HOM05D004854 ORTHO05D005854 6.1e-19 97.8 71 66.2
Sc26g0002890 Simmondsia chinensis HOM05D004854 ORTHO05D005854 6.1e-19 97.8 76 61.8
SGA_v2.0_scaffold46G17340 Striga asiatica HOM05D004854 ORTHO05D005854 8.0e-19 97.4 74 66.2
Thhalv10026301m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 1.0e-18 97.1 71 66.2
Oeu064534.1 Olea europaea HOM05D004854 ORTHO05D005854 1.4e-18 96.7 70 67.1
HanXRQChr10g0297881 Helianthus annuus HOM05D004854 ORTHO05D005854 1.8e-18 96.3 70 68.6
CARHR233360 Cardamine hirsuta HOM05D004854 ORTHO05D005854 2.3e-18 95.9 71 64.8
CsaV3_2G008580 Cucumis sativus L. HOM05D004854 ORTHO05D005854 2.3e-18 95.9 67 65.7
Sed0005886 Sechium edule HOM05D004854 ORTHO05D005854 2.3e-18 95.9 70 67.1
Sed0001835 Sechium edule HOM05D004854 ORTHO05D005854 3.0e-18 95.5 70 64.3
THA.LOC104813509 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 3.0e-18 95.5 70 62.9
MSTRG.19386 Avicennia marina HOM05D004854 ORTHO05D005854 5.2e-18 94.7 71 64.8
Carub.0007s1506 Capsella rubella HOM05D004854 ORTHO05D005854 5.2e-18 94.7 71 66.2
SEGI_03932 Sequoiadendron giganteum HOM05D004854 ORTHO05D005854 5.2e-18 94.7 71 62.0
CANSAT11G1984 Cannabis sativa HOM05D004854 ORTHO05D005854 6.8e-18 94.4 69 66.7
Cpa.g.sc95.32 Carica papaya HOM05D004854 ORTHO05D005854 6.8e-18 94.4 71 63.4
CDE05G0266 Ceratophyllum demersum HOM05D000177 ORTHO05D008165 8.8e-18 94.0 67 62.7
CDE05G2165 Ceratophyllum demersum HOM05D004854 ORTHO05D005854 8.8e-18 94.0 67 62.7
ECA247G3496 Erigeron canadensis HOM05D004854 ORTHO05D005854 8.8e-18 94.0 70 67.1
Sp7g23910 Schrenkiella parvula HOM05D004854 ORTHO05D005854 8.8e-18 94.0 70 64.3
SGA_v2.0_scaffold41G15867 Striga asiatica HOM05D004854 ORTHO05D005854 8.8e-18 94.0 70 65.7
Medtr8g089790 Medicago truncatula HOM05D004854 ORTHO05D005854 1.2e-17 93.6 75 58.7
PGR142G3975 Punica granatum HOM05D004854 ORTHO05D005854 1.2e-17 93.6 75 60.0
MSTRG.26532 Avicennia marina HOM05D004854 ORTHO05D005854 1.5e-17 93.2 78 60.3
CSS0022850 Camellia sinensis var. sinensis HOM05D004854 ORTHO05D005854 1.5e-17 93.2 67 67.2
Oeu044701.1 Olea europaea HOM05D004854 ORTHO05D005854 1.5e-17 93.2 70 64.3
THA.LOC104811780 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 1.5e-17 93.2 70 61.4
CAN.G86.2 Capsicum annuum HOM05D004854 ORTHO05D005854 2.0e-17 92.8 67 65.7
Ciclev10002863m.g Citrus clementina HOM05D004854 ORTHO05D005854 2.0e-17 92.8 72 66.7
Ca_17781_v3 Cicer arietinum L. HOM05D004854 ORTHO05D005854 2.6e-17 92.4 75 61.3
MBI13_g31550_MAGBIO Magnolia biondii HOM05D004854 ORTHO05D005854 2.6e-17 92.4 67 67.2
Solyc07g009330.4 Solanum lycopersicum HOM05D004854 ORTHO05D005854 2.6e-17 92.4 67 67.2
TWI38G2070 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 2.6e-17 92.4 70 60.0
vmacro20836 Vaccinium macrocarpon HOM05D004854 ORTHO05D005854 2.6e-17 92.4 67 67.2
BcaB08g36089 Brassica carinata HOM05D004854 ORTHO05D005854 3.4e-17 92.0 71 63.4
TWI38G1790 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 3.4e-17 92.0 71 60.6
Nitab4.5_0000074g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 4.4e-17 91.7 67 67.2
Nitab4.5_0012849g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 4.4e-17 91.7 67 67.2
Potri.003G010200 Populus trichocarpa HOM05D004854 ORTHO05D005854 5.7e-17 91.3 71 66.2
Prupe.1G079500 Prunus persica HOM05D004854 ORTHO05D005854 5.7e-17 91.3 70 62.9
Oeu000974.1 Olea europaea HOM05D004854 ORTHO05D005854 7.5e-17 90.9 71 60.6
Oeu044703.1 Olea europaea HOM05D004854 ORTHO05D005854 7.5e-17 90.9 67 64.2
Phvul.002G259300 Phaseolus vulgaris HOM05D004854 ORTHO05D005854 7.5e-17 90.9 74 58.1
Sopen07g005080 Solanum pennellii HOM05D004854 ORTHO05D005854 7.5e-17 90.9 67 65.7
PGSC0003DMG400008513 Solanum tuberosum HOM05D004854 ORTHO05D005854 7.5e-17 90.9 67 65.7
TWI18G0069 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 7.5e-17 90.9 69 60.9
VMungo0251G0447 Vigna mungo HOM05D004854 ORTHO05D005854 7.5e-17 90.9 71 57.7
CiPaw.08G034100 Carya illinoinensis HOM05D004854 ORTHO05D005854 9.8e-17 90.5 70 62.9
Manes.06G021300 Manihot esculenta HOM05D004854 ORTHO05D005854 9.8e-17 90.5 68 66.2
Peaxi162Scf00324g00719 Petunia axillaris HOM05D004854 ORTHO05D005854 9.8e-17 90.5 67 65.7
Rhsim01G0120500 Rhododendron simsii HOM05D004854 ORTHO05D005854 9.8e-17 90.5 67 65.7
DCAR_003035 Daucus carota HOM05D004854 ORTHO05D005854 1.3e-16 90.1 71 63.4
Lsat_1_v5_gn_9_31040 Lactuca sativa HOM05D004854 ORTHO05D005854 1.3e-16 90.1 70 64.3
Psat7g058720 Pisum sativum HOM05D004854 ORTHO05D005854 1.3e-16 90.1 75 60.0
PGR044G2628 Punica granatum HOM05D004854 ORTHO05D005854 1.3e-16 90.1 67 64.2
PGR109G0004 Punica granatum HOM05D004854 ORTHO05D005854 1.3e-16 90.1 67 64.2
Actinidia39348 Actinidia chinensis HOM05D000406 ORTHO05D003425 1.7e-16 89.7 67 64.2
arahy.Tifrunner.gnm1.ann1.9B8HPN Arachis hypogaea HOM05D004854 ORTHO05D005854 1.7e-16 89.7 70 62.9
arahy.Tifrunner.gnm1.ann1.P9UE85 Arachis hypogaea HOM05D004854 ORTHO05D005854 1.7e-16 89.7 70 62.9
arahy.Tifrunner.gnm1.ann1.XNR1AK Arachis hypogaea HOM05D004854 ORTHO05D005854 1.7e-16 89.7 69 60.9
Duzib150G0904 Durio zibethinus HOM05D004854 ORTHO05D005854 1.7e-16 89.7 67 64.2
Lj4g0022898 Lotus japonicus HOM05D004854 ORTHO05D005854 1.7e-16 89.7 70 62.9
Gohir.A05G003400 Gossypium hirsutum HOM05D004854 ORTHO05D005854 2.2e-16 89.4 69 63.8
Gohir.D05G003800 Gossypium hirsutum HOM05D004854 ORTHO05D005854 2.2e-16 89.4 69 63.8
Gorai.009G003400 Gossypium raimondii HOM05D004854 ORTHO05D005854 2.2e-16 89.4 69 63.8
Lalb_Chr07g0185421 Lupinus albus HOM05D004854 ORTHO05D005854 2.2e-16 89.4 67 67.2
MD13G1245200 Malus domestica HOM05D004854 ORTHO05D005854 2.2e-16 89.4 72 59.7
QL11p004841 Quercus lobata HOM05D004854 ORTHO05D005854 2.2e-16 89.4 70 60.0
TAR625G0051 Trochodendron aralioides HOM05D004854 ORTHO05D005854 2.2e-16 89.4 67 62.7
AUR62034880 Chenopodium quinoa HOM05D004854 ORTHO05D005854 2.8e-16 89.0 70 60.0
Hund26676 Selenicereus undatus HOM05D004854 ORTHO05D005854 2.8e-16 89.0 71 59.2
Lalb_Chr13g0295841 Lupinus albus HOM05D004854 ORTHO05D005854 3.7e-16 88.6 70 62.9
MD16G1253100 Malus domestica HOM05D004854 ORTHO05D005854 3.7e-16 88.6 70 60.0
Potri.009G032600 Populus trichocarpa HOM05D004854 ORTHO05D005854 3.7e-16 88.6 71 64.8
Dinv25401 Davidia involucrata HOM05D004854 ORTHO05D005854 6.3e-16 87.8 69 62.3
arahy.Tifrunner.gnm1.ann1.P39ID1 Arachis hypogaea HOM05D004854 ORTHO05D005854 8.3e-16 87.4 74 58.1
Dinv26446 Davidia involucrata HOM05D004854 ORTHO05D005854 8.3e-16 87.4 67 62.7
Eucgr.C02261 Eucalyptus grandis HOM05D004854 ORTHO05D005854 8.3e-16 87.4 67 61.2
Eucgr.C02263 Eucalyptus grandis HOM05D004854 ORTHO05D005854 8.3e-16 87.4 67 61.2
arahy.Tifrunner.gnm1.ann1.AP25S4 Arachis hypogaea HOM05D004854 ORTHO05D005854 1.1e-15 87.0 69 59.4
Cfa013427 Carpinus fangiana HOM05D004854 ORTHO05D005854 1.1e-15 87.0 67 61.2
SalBow5G3614 Salvia bowleyana HOM05D004854 ORTHO05D005854 1.1e-15 87.0 70 62.9
GSVIVG01010910001 Vitis vinifera HOM05D004854 ORTHO05D005854 1.1e-15 87.0 67 62.7
Ah.05g168230 Amaranthus hybridus HOM05D004854 ORTHO05D005854 1.4e-15 86.7 70 58.6
TAR636G3485 Trochodendron aralioides HOM05D004854 ORTHO05D005854 1.8e-15 86.3 60 68.3
AUR62026626 Chenopodium quinoa HOM05D004854 ORTHO05D005854 2.4e-15 85.9 70 58.6
arahy.Tifrunner.gnm1.ann1.90PU0B Arachis hypogaea HOM05D004854 ORTHO05D005854 3.1e-15 85.5 71 59.2
Cc06_g22110 Coffea canephora HOM05D004854 ORTHO05D005854 3.1e-15 85.5 67 59.7
TPR.G6298 Trifolium pratense HOM05D004854 ORTHO05D005854 3.1e-15 85.5 67 62.7
Eucgr.A01410 Eucalyptus grandis HOM05D004854 ORTHO05D005854 4.1e-15 85.1 67 59.7
unitig_899.g15189 Utricularia gibba HOM05D004854 ORTHO05D005854 4.1e-15 85.1 70 58.6
Ah.16g108570 Amaranthus hybridus HOM05D004854 ORTHO05D005854 5.4e-15 84.7 70 57.1
RcHm_v2.0_Chr4g0400241 Rosa chinensis HOM05D004854 ORTHO05D005854 7.0e-15 84.3 67 62.7
Sabra09G0023200 Salix brachista HOM05D004854 ORTHO05D005854 7.0e-15 84.3 68 61.8
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 7.0e-15 84.3 66 59.1
Dinv25400 Davidia involucrata HOM05D004854 ORTHO05D005854 9.1e-15 84.0 66 60.6
FvH4_4g07630 Fragaria vesca HOM05D004854 ORTHO05D005854 1.2e-14 83.6 67 59.7
FAN07G2001 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.2e-14 83.6 67 59.7
FAN12G2445 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.2e-14 83.6 67 59.7
FAN17G2475 Fragaria x ananassa HOM05D004854 ORTHO05D005854 1.2e-14 83.6 67 59.7
Lj6g0003516 Lotus japonicus HOM05D004854 ORTHO05D005854 1.2e-14 83.6 70 55.7
Sabra03G0005200 Salix brachista HOM05D004854 ORTHO05D005854 1.2e-14 83.6 67 62.7
HPP92_026146 Vanilla planifolia HOM05D003573 ORTHO05D004204 1.6e-14 83.2 68 57.4
Thecc.01G294400 Theobroma cacao HOM05D004854 ORTHO05D005854 2.0e-14 82.8 72 56.9
FAN22G0664 Fragaria x ananassa HOM05D004854 ORTHO05D005854 3.5e-14 82.0 69 58.0
Thecc.09G180300 Theobroma cacao HOM05D004854 ORTHO05D005854 4.5e-14 81.6 69 58.0
Zm00001eb226990 Zea mays HOM05D004854 ORTHO05D005854 4.5e-14 81.6 70 52.9
ATR0626G247 Amborella trichopoda HOM05D004854 ORTHO05D005854 1.0e-13 80.5 62 61.3
Os06g0701400 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 1.0e-13 80.5 70 54.3
Migut.L01900 Erythranthe guttata HOM05D004854 ORTHO05D005854 1.7e-13 79.7 61 60.7
Os01g0231700 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 2.9e-13 79.0 70 52.9
RcHm_v2.0_Chr1g0341131 Rosa chinensis HOM05D004854 ORTHO05D005854 3.8e-13 78.6 67 58.2
Zm00001eb272850 Zea mays HOM05D004854 ORTHO05D005854 1.1e-12 77.0 68 54.4
C03p15060 Brassica napus HOM05D004854 ORTHO05D005854 1.6e-11 73.2 56 67.9
Pp3c22_2920 Physcomitrium patens HOM05D004854 ORTHO05D005854 3.6e-11 72.0 72 51.4
arahy.Tifrunner.gnm1.ann1.63P7R9 Arachis hypogaea HOM05D000970 ORTHO05D000788 1.4e-10 70.1 53 66.0
Pp3c21_16160 Physcomitrium patens HOM05D004854 ORTHO05D005854 5.2e-10 68.2 72 48.6
Nn2g12744 Nelumbo nucifera HOM05D004854 ORTHO05D005854 1.2e-09 67.0 46 67.4
BolC3t13948H Brassica oleracea HOM05D004854 ORTHO05D005854 1.5e-09 66.6 49 69.4
SMO172G0233 Selaginella moellendorffii HOM05D004854 ORTHO05D005854 5.7e-09 64.7 70 42.9
Duzib170G0267 Durio zibethinus HOM05D004854 ORTHO05D005854 4.9e-08 61.6 40 70.0
Mapoly0006s0174 Marchantia polymorpha HOM05D004854 ORTHO05D005854 4.9e-08 61.6 72 40.3
COL.COLO4_25466 Corchorus olitorius HOM05D004854 ORTHO05D005854 6.3e-08 61.2 40 65.0
Duzib168G1583 Durio zibethinus HOM05D004854 ORTHO05D005854 2.4e-07 59.3 46 58.7


User provided reference genes

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