Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO566G0024 Papaver somniferum HOM05D003358 ORTHO05D003864 2.7e-42 174.9 85 100.0
PSO407G0137 Papaver somniferum HOM05D003358 ORTHO05D003864 3.3e-24 114.8 61 86.9
CSS0003095 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 8.7e-17 90.1 64 65.6
PSO170G4489 Papaver somniferum HOM05D003358 ORTHO05D003864 8.7e-17 90.1 61 70.5
CANSAT25G0133 Cannabis sativa HOM05D003358 ORTHO05D003864 1.1e-16 89.7 63 68.3
Sc17g0003900 Simmondsia chinensis HOM05D003358 ORTHO05D003864 1.1e-16 89.7 63 71.4
TAR633G1108 Trochodendron aralioides HOM05D003358 ORTHO05D003864 1.1e-16 89.7 63 69.8
Ciclev10020955m.g Citrus clementina HOM05D003358 ORTHO05D003864 3.3e-16 88.2 63 63.5
Manes.05G072700 Manihot esculenta HOM05D003358 ORTHO05D003864 3.3e-16 88.2 63 65.1
Thecc.01G284800 Theobroma cacao HOM05D003358 ORTHO05D003864 9.7e-16 86.7 76 55.3
Rhsim01G0276900 Rhododendron simsii HOM05D003358 ORTHO05D003864 1.3e-15 86.3 65 67.7
Nn1g02094 Nelumbo nucifera HOM05D003358 ORTHO05D003864 1.6e-15 85.9 75 56.0
CSS0018318 Camellia sinensis var. sinensis HOM05D003358 ORTHO05D003864 2.2e-15 85.5 64 65.6
Ciclev10020957m.g Citrus clementina HOM05D003358 ORTHO05D003864 2.2e-15 85.5 63 60.3
Duzib138G0559 Durio zibethinus HOM05D003358 ORTHO05D003864 2.8e-15 85.1 53 67.9
Sabra14G0104100 Salix brachista HOM05D003358 ORTHO05D003864 2.8e-15 85.1 63 61.9
vmacro14942 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 2.8e-15 85.1 64 70.3
Actinidia00727 Actinidia chinensis HOM05D003358 ORTHO05D003864 3.7e-15 84.7 63 68.3
MBI17_g17897_MAGBIO Magnolia biondii HOM05D003358 ORTHO05D003864 4.8e-15 84.3 63 63.5
vmacro02543 Vaccinium macrocarpon HOM05D003358 ORTHO05D003864 6.3e-15 84.0 50 76.0
EL10Ac7g17196 Beta vulgaris HOM05D003358 ORTHO05D003864 8.2e-15 83.6 61 63.9
MD03G1270200 Malus domestica HOM05D003358 ORTHO05D003864 1.1e-14 83.2 72 56.9
Sed0023278 Sechium edule HOM05D003358 ORTHO05D003864 1.1e-14 83.2 63 63.5
Actinidia24873 Actinidia chinensis HOM05D003358 ORTHO05D003864 1.4e-14 82.8 63 69.8
MD11G1291200 Malus domestica HOM05D003358 ORTHO05D003864 1.4e-14 82.8 80 51.2
FAN20G3017 Fragaria x ananassa HOM05D003358 ORTHO05D003864 1.8e-14 82.4 65 66.2
Lalb_Chr06g0163131 Lupinus albus HOM05D003358 ORTHO05D003864 1.8e-14 82.4 75 50.7
CDE07G0407 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 2.4e-14 82.0 72 55.6
FvH4_2g24080 Fragaria vesca HOM05D003358 ORTHO05D003864 2.4e-14 82.0 65 67.7
FAN24G0501 Fragaria x ananassa HOM05D003358 ORTHO05D003864 2.4e-14 82.0 65 67.7
Gohir.A11G120000 Gossypium hirsutum HOM05D003358 ORTHO05D003864 2.4e-14 82.0 64 59.4
Lj5g0011221 Lotus japonicus HOM05D003358 ORTHO05D003864 2.4e-14 82.0 61 60.7
Prupe.8G246900 Prunus persica HOM05D003358 ORTHO05D003864 2.4e-14 82.0 78 53.8
RcHm_v2.0_Chr6g0291861 Rosa chinensis HOM05D003358 ORTHO05D003864 2.4e-14 82.0 68 63.2
Solyc06g084360.4 Solanum lycopersicum HOM05D003358 ORTHO05D003864 2.4e-14 82.0 68 57.4
GSVIVG01011070001 Vitis vinifera HOM05D003358 ORTHO05D003864 2.4e-14 82.0 65 61.5
Eucgr.H01526 Eucalyptus grandis HOM05D003358 ORTHO05D003864 3.1e-14 81.6 68 63.2
FAN15G0418 Fragaria x ananassa HOM05D003358 ORTHO05D003864 3.1e-14 81.6 68 63.2
FAN27G2094 Fragaria x ananassa HOM05D003358 ORTHO05D003864 3.1e-14 81.6 68 63.2
QL12p022545 Quercus lobata HOM05D003358 ORTHO05D003864 5.3e-14 80.9 74 56.8
Gohir.A08G044700 Gossypium hirsutum HOM05D003358 ORTHO05D003864 9.0e-14 80.1 58 62.1
Gohir.D08G054400 Gossypium hirsutum HOM05D003358 ORTHO05D003864 9.0e-14 80.1 58 62.1
Gorai.004G054800 Gossypium raimondii HOM05D003358 ORTHO05D003864 9.0e-14 80.1 58 62.1
HanXRQChr10g0282971 Helianthus annuus HOM05D003358 ORTHO05D003864 9.0e-14 80.1 70 55.7
Hma1.2p1_0257F.1_g103860 Hydrangea macrophylla HOM05D003358 ORTHO05D003864 9.0e-14 80.1 63 66.7
Sopen06g035750 Solanum pennellii HOM05D003358 ORTHO05D003864 9.0e-14 80.1 69 58.0
Aa31LG1G29500 Aethionema arabicum HOM05D003358 ORTHO05D003864 1.2e-13 79.7 57 64.9
Duzib211G0202 Durio zibethinus HOM05D003358 ORTHO05D003864 1.2e-13 79.7 58 65.5
Sp2g00790 Schrenkiella parvula HOM05D003358 ORTHO05D003864 1.2e-13 79.7 57 63.2
PGSC0003DMG402020120 Solanum tuberosum HOM05D003358 ORTHO05D003864 1.2e-13 79.7 69 58.0
SGA_v2.0_scaffold1G00442 Striga asiatica HOM05D003358 ORTHO05D003864 1.5e-13 79.3 66 60.6
Dinv11261 Davidia involucrata HOM05D003358 ORTHO05D003864 2.0e-13 79.0 58 67.2
Glyma.10G024100 Glycine max HOM05D003358 ORTHO05D003864 2.0e-13 79.0 75 49.3
Atru.chr5.1347 Acer truncatum HOM05D003358 ORTHO05D003864 2.6e-13 78.6 63 66.7
AL2G11230 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 2.6e-13 78.6 57 61.4
Thhalv10008106m.g Eutrema salsugineum HOM05D003358 ORTHO05D003864 2.6e-13 78.6 57 61.4
Glyma.02G149800 Glycine max HOM05D003358 ORTHO05D003864 2.6e-13 78.6 75 50.7
Peaxi162Scf00783g00337 Petunia axillaris HOM05D003358 ORTHO05D003864 2.6e-13 78.6 68 55.9
TPR.G13299 Trifolium pratense HOM05D003358 ORTHO05D003864 2.6e-13 78.6 61 62.3
CAN.G1682.13 Capsicum annuum HOM05D003358 ORTHO05D003864 3.4e-13 78.2 69 58.0
CiPaw.07G095400 Carya illinoinensis HOM05D003358 ORTHO05D003864 3.4e-13 78.2 63 63.5
Cpa.g.sc9.121 Carica papaya HOM05D003358 ORTHO05D003864 4.5e-13 77.8 63 65.1
ECA247G2569 Erigeron canadensis HOM05D003358 ORTHO05D003864 5.9e-13 77.4 77 50.6
Oeu001439.1 Olea europaea HOM05D003358 ORTHO05D003864 5.9e-13 77.4 71 53.5
MSTRG.21581 Avicennia marina HOM05D003358 ORTHO05D003864 7.7e-13 77.0 63 61.9
Lj2C1179T8 Lonicera japonica HOM05D003358 ORTHO05D003864 7.7e-13 77.0 69 56.5
BolC9t54582H Brassica oleracea HOM05D003358 ORTHO05D003864 1.0e-12 76.6 61 57.4
MELO3C015867.2 Cucumis melo HOM05D003358 ORTHO05D003864 1.0e-12 76.6 63 60.3
Potri.014G138000 Populus trichocarpa HOM05D003358 ORTHO05D003864 1.0e-12 76.6 63 60.3
TPR.G13400 Trifolium pratense HOM05D003358 ORTHO05D003864 1.3e-12 76.3 61 59.0
VMungo0720G0236 Vigna mungo HOM05D003358 ORTHO05D003864 1.3e-12 76.3 48 66.7
BcaC04g22672 Brassica carinata HOM05D003358 ORTHO05D003864 1.7e-12 75.9 61 57.4
C09p16810 Brassica napus HOM05D003358 ORTHO05D003864 1.7e-12 75.9 61 57.4
Carub.0002s0094 Capsella rubella HOM05D003358 ORTHO05D003864 1.7e-12 75.9 62 56.5
Cc01_g19840 Coffea canephora HOM05D003358 ORTHO05D003864 1.7e-12 75.9 48 72.9
HPP92_000042 Vanilla planifolia HOM05D003358 ORTHO05D003864 2.2e-12 75.5 55 58.2
TWI23G0223 Tripterygium wilfordii HOM05D003358 ORTHO05D003864 3.8e-12 74.7 77 48.1
DCAR_012453 Daucus carota HOM05D003358 ORTHO05D003864 5.0e-12 74.3 64 57.8
Sed0022837 Sechium edule HOM05D003358 ORTHO05D003864 5.0e-12 74.3 64 54.7
CARHR047070 Cardamine hirsuta HOM05D003358 ORTHO05D003864 8.5e-12 73.6 55 58.2
CsaV3_7G028540 Cucumis sativus L. HOM05D003358 ORTHO05D003864 8.5e-12 73.6 62 56.5
THA.LOC104823098 Tarenaya hassleriana HOM05D003358 ORTHO05D003864 8.5e-12 73.6 70 50.0
Zm00001eb329440 Zea mays HOM05D003358 ORTHO05D003864 1.1e-11 73.2 62 59.7
SMO116G0196 Selaginella moellendorffii HOM05D003358 ORTHO05D003864 1.9e-11 72.4 73 50.7
unitig_0.g80 Utricularia gibba HOM05D003358 ORTHO05D003864 1.9e-11 72.4 51 60.8
Psat6g168920 Pisum sativum HOM05D003358 ORTHO05D003864 2.5e-11 72.0 61 59.0
A09p13990 Brassica napus HOM05D003358 ORTHO05D003864 3.2e-11 71.6 61 50.8
BraA09t37046Z Brassica rapa HOM05D003358 ORTHO05D003864 5.5e-11 70.9 61 50.8
Mapoly0009s0167 Marchantia polymorpha HOM05D003358 ORTHO05D003864 5.5e-11 70.9 79 49.4
BcaB07g31539 Brassica carinata HOM05D003358 ORTHO05D003864 7.2e-11 70.5 63 55.6
AagrBONN_evm.TU.Sc2ySwM_368.2570 Anthoceros agrestis HOM05D003358 ORTHO05D003864 9.4e-11 70.1 75 44.0
Medtr1g089900 Medicago truncatula HOM05D003358 ORTHO05D003864 1.2e-10 69.7 61 57.4
SEGI_02468 Sequoiadendron giganteum HOM05D003358 ORTHO05D003864 1.2e-10 69.7 64 53.1
Pp3c19_9460 Physcomitrium patens HOM05D003358 ORTHO05D003864 4.6e-10 67.8 78 48.7
Pp3c22_7850 Physcomitrium patens HOM05D003358 ORTHO05D003864 7.9e-10 67.0 34 79.4
TAR362G0768 Trochodendron aralioides HOM05D003358 ORTHO05D003864 1.0e-09 66.6 44 72.7
TPR.G32824 Trifolium pratense HOM05D003358 ORTHO05D003864 6.7e-09 63.9 76 42.1
Migut.D00256 Erythranthe guttata HOM05D003358 ORTHO05D003864 1.1e-08 63.2 64 54.7
MD11G1291000 Malus domestica HOM05D003358 ORTHO05D003864 4.3e-08 61.2 25 92.0
ATR0626G053 Amborella trichopoda HOM05D003358 ORTHO05D003864 5.7e-08 60.8 69 44.9
AUR62033697 Chenopodium quinoa HOM05D003358 ORTHO05D003864 5.7e-08 60.8 37 73.0
CDE05G1806 Ceratophyllum demersum HOM05D003358 ORTHO05D003864 7.4e-08 60.5 62 53.2
AT1G59560 Arabidopsis thaliana HOM05D003358 ORTHO05D003864 2.2e-07 58.9 37 62.2
AUR62036783 Chenopodium quinoa HOM05D003358 ORTHO05D003864 2.8e-07 58.5 36 72.2
Gorai.007G133700 Gossypium raimondii HOM05D003358 ORTHO05D003864 2.8e-07 58.5 51 56.9
AL5G45870 Arabidopsis lyrata HOM05D003358 ORTHO05D003864 4.8e-07 57.8 72 43.1
Rhsim13G0022000 Rhododendron simsii HOM05D003358 ORTHO05D003864 6.3e-07 57.4 40 70.0
SalBow4G3039 Salvia bowleyana HOM05D003358 ORTHO05D003864 6.3e-07 57.4 53 56.6
Lsat_1_v5_gn_9_4540 Lactuca sativa HOM05D003358 ORTHO05D003864 1.4e-06 56.2 58 50.0
Lj1C44G0 Lonicera japonica HOM05D003358 ORTHO05D003864 1.4e-06 56.2 47 57.4
Carub.0002s0588 Capsella rubella HOM05D003358 ORTHO05D003864 4.1e-06 54.7 28 71.4
Ah.08g212910 Amaranthus hybridus HOM05D003358 ORTHO05D003864 5.3e-06 54.3 57 47.4
arahy.Tifrunner.gnm1.ann1.KX9J6A Arachis hypogaea HOM05D003358 ORTHO05D003864 6.9e-06 53.9 51 54.9
Hund05356 Selenicereus undatus HOM05D003358 ORTHO05D003864 6.9e-06 53.9 66 39.4
BcaC07g42712 Brassica carinata HOM05D003358 ORTHO05D003864 9.1e-06 53.5 29 69.0


User provided reference genes

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