Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO548G0098 Papaver somniferum HOM05D000540 ORTHO05D008899 1.6e-48 195.7 93 100.0
PSO548G0119 Papaver somniferum HOM05D000540 ORTHO05D008899 1.6e-48 195.7 93 100.0
Nn020s41485 Nelumbo nucifera HOM05D000540 ORTHO05D008899 8.9e-47 189.9 94 97.9
Nn5g27213 Nelumbo nucifera HOM05D000540 ORTHO05D008899 8.9e-47 189.9 94 97.9
MELO3C028092.2 Cucumis melo HOM05D000540 ORTHO05D008899 4.4e-46 187.6 94 96.8
LjContig00489g0018536 Lotus japonicus HOM05D000540 ORTHO05D008899 4.4e-46 187.6 94 96.8
RcHm_v2.0_CPg0502591 Rosa chinensis HOM05D000540 ORTHO05D008899 4.4e-46 187.6 94 96.8
Sed0004093 Sechium edule HOM05D000540 ORTHO05D008899 4.4e-46 187.6 94 96.8
Sed0008426 Sechium edule HOM05D000540 ORTHO05D008899 4.4e-46 187.6 94 96.8
Sed0015411 Sechium edule HOM05D000540 ORTHO05D008899 4.4e-46 187.6 94 96.8
Sed0019752 Sechium edule HOM05D000540 ORTHO05D008899 4.4e-46 187.6 94 96.8
Sed0026411 Sechium edule HOM05D000540 ORTHO05D008899 4.4e-46 187.6 94 96.8
Nn1g08201 Nelumbo nucifera HOM05D000540 ORTHO05D008899 7.5e-46 186.8 94 95.7
SalBow1G0808 Salvia bowleyana HOM05D000540 ORTHO05D008899 7.5e-46 186.8 94 95.7
SalBow1G3106 Salvia bowleyana HOM05D000540 ORTHO05D008899 7.5e-46 186.8 94 95.7
CAN.G1109.8 Capsicum annuum HOM05D000540 ORTHO05D008899 9.8e-46 186.4 94 96.8
CAN.G114.6 Capsicum annuum HOM05D000540 ORTHO05D008899 9.8e-46 186.4 94 96.8
CAN.G781.25 Capsicum annuum HOM05D000540 ORTHO05D008899 9.8e-46 186.4 94 96.8
Sed0007321 Sechium edule HOM05D000540 ORTHO05D008899 1.3e-45 186.0 94 95.7
DCAR_032528 Daucus carota HOM05D000540 ORTHO05D008899 3.7e-45 184.5 94 95.7
DCAR_032548 Daucus carota HOM05D000540 ORTHO05D008899 3.7e-45 184.5 94 95.7
CsaV3_UNG209010 Cucumis sativus L. HOM05D000540 ORTHO05D008899 4.9e-45 184.1 93 95.7
RcHm_v2.0_Chr2g0118491 Rosa chinensis HOM05D000540 ORTHO05D008899 3.2e-44 181.4 94 94.7
PGR111G0050 Punica granatum HOM05D000540 ORTHO05D008899 7.0e-44 180.3 94 93.6
PGR111G0124 Punica granatum HOM05D000540 ORTHO05D008899 7.0e-44 180.3 94 93.6
GSVIVG01023980001 Vitis vinifera HOM05D000540 ORTHO05D008899 7.0e-44 180.3 94 93.6
AL2G20490 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 1.2e-43 179.5 94 92.6
AL4G23550 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 1.2e-43 179.5 94 92.6
ATCG00840 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 1.2e-43 179.5 94 92.6
ATCG01300 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 1.2e-43 179.5 94 92.6
CARHR282300 Cardamine hirsuta HOM05D000540 ORTHO05D008899 1.2e-43 179.5 94 92.6
CARHR282570 Cardamine hirsuta HOM05D000540 ORTHO05D008899 1.2e-43 179.5 94 92.6
Peaxi162Scf00211g00237 Petunia axillaris HOM05D000540 ORTHO05D008899 1.2e-43 179.5 94 93.6
Potri.005G154350 Populus trichocarpa HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 93.6
Potri.013G138612 Populus trichocarpa HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 93.6
AL2G21780 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 4.6e-43 177.6 94 91.5
Gohir.A04G039075 Gossypium hirsutum HOM05D000540 ORTHO05D008899 4.6e-43 177.6 94 92.6
HanXRQChr00c0165g0572201 Helianthus annuus HOM05D000540 ORTHO05D008899 4.6e-43 177.6 94 92.6
HanXRQChr00c0368g0574201 Helianthus annuus HOM05D000540 ORTHO05D008899 4.6e-43 177.6 94 92.6
HanXRQChr00c0496g0575201 Helianthus annuus HOM05D000540 ORTHO05D008899 4.6e-43 177.6 94 92.6
HanXRQChr00c0572g0575951 Helianthus annuus HOM05D000540 ORTHO05D008899 4.6e-43 177.6 94 92.6
HanXRQChr00c0585g0576271 Helianthus annuus HOM05D000540 ORTHO05D008899 4.6e-43 177.6 94 92.6
HanXRQChr05g0152521 Helianthus annuus HOM05D000540 ORTHO05D008899 4.6e-43 177.6 94 92.6
HanXRQChr10g0284441 Helianthus annuus HOM05D000540 ORTHO05D008899 4.6e-43 177.6 94 92.6
HanXRQChr10g0318001 Helianthus annuus HOM05D000540 ORTHO05D008899 4.6e-43 177.6 94 92.6
HanXRQChr11g0321161 Helianthus annuus HOM05D000540 ORTHO05D008899 4.6e-43 177.6 94 92.6
HanXRQChr13g0416611 Helianthus annuus HOM05D000540 ORTHO05D008899 4.6e-43 177.6 94 92.6
HanXRQChr15g0488331 Helianthus annuus HOM05D000540 ORTHO05D008899 4.6e-43 177.6 94 92.6
Gohir.A10G084500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 7.8e-43 176.8 94 92.6
Gohir.D01G102216 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.3e-42 176.0 94 91.5
Lalb_Chr07g0191961 Lupinus albus HOM05D000540 ORTHO05D008899 1.7e-42 175.6 94 92.6
Nn4g25233 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.7e-42 175.6 94 91.5
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 2.3e-42 175.3 94 91.5
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.5e-41 172.6 92 89.1
Gohir.D06G104900 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.5e-41 171.8 94 89.4
Gohir.1Z050392 Gossypium hirsutum HOM05D000540 ORTHO05D008899 3.3e-41 171.4 94 90.4
LjContig00318g0005310 Lotus japonicus HOM05D000540 ORTHO05D008899 4.3e-41 171.0 94 89.4
LjContig00318g0024355 Lotus japonicus HOM05D000540 ORTHO05D008899 4.3e-41 171.0 94 89.4
LjContig00319g0005990 Lotus japonicus HOM05D000540 ORTHO05D008899 4.3e-41 171.0 94 89.4
LjContig00319g0017169 Lotus japonicus HOM05D000540 ORTHO05D008899 4.3e-41 171.0 94 89.4
Gorai.007G229500 Gossypium raimondii HOM05D000540 ORTHO05D008899 1.2e-40 169.5 94 89.4
Lj4g0015929 Lotus japonicus HOM05D000540 ORTHO05D008899 2.1e-40 168.7 94 88.3
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 8.0e-40 166.8 94 87.2
Nitab4.5_0020349g0050 Nicotiana tabacum HOM05D000540 ORTHO05D008899 6.8e-39 163.7 94 88.3
Gohir.D11G213500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.2e-38 162.9 94 86.2
Gohir.D04G085766 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.6e-38 161.8 94 84.0
Migut.D01325 Erythranthe guttata HOM05D000540 ORTHO05D000681 3.4e-38 161.4 82 93.9
CAN.G1468.2 Capsicum annuum HOM05D000540 ORTHO05D008899 9.8e-38 159.8 94 85.1
Gohir.D06G105280 Gossypium hirsutum HOM05D000540 ORTHO05D008899 9.8e-38 159.8 94 85.1
Peaxi162Scf00483g00319 Petunia axillaris HOM05D000540 ORTHO05D008899 1.3e-37 159.5 81 95.1
Nitab4.5_0014666g0090 Nicotiana tabacum HOM05D000540 ORTHO05D008899 3.7e-37 157.9 94 85.1
HanXRQChr09g0256691 Helianthus annuus HOM05D000540 ORTHO05D008899 6.4e-37 157.1 83 91.6
CAN.G895.33 Capsicum annuum HOM05D000540 ORTHO05D008899 8.3e-37 156.8 93 86.0
CAN.G895.34 Capsicum annuum HOM05D000540 ORTHO05D008899 4.1e-36 154.5 94 84.0
HanXRQChr11g0352351 Helianthus annuus HOM05D000540 ORTHO05D000681 4.1e-36 154.5 82 91.5
Gohir.A12G089000 Gossypium hirsutum HOM05D000540 ORTHO05D008899 5.4e-36 154.1 81 92.6
Sed0012077 Sechium edule HOM05D000540 ORTHO05D008899 5.4e-36 154.1 94 84.0
BolSC56t61242H Brassica oleracea HOM05D000540 ORTHO05D008899 7.0e-36 153.7 84 86.9
HanXRQChr00c0349g0573971 Helianthus annuus HOM05D000540 ORTHO05D000681 1.2e-35 152.9 83 89.2
Medtr0002s0350 Medicago truncatula HOM05D000540 ORTHO05D008899 2.7e-35 151.8 82 85.4
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.7e-34 149.1 81 90.1
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 2.3e-34 148.7 84 84.5
BolC2t10582H Brassica oleracea HOM05D000540 ORTHO05D008899 5.0e-34 147.5 79 88.6
AL1G45030 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 1.5e-33 146.0 77 90.9
Lalb_Chr25g0281971 Lupinus albus HOM05D000540 ORTHO05D008899 2.5e-33 145.2 94 76.6
Medtr4g047920 Medicago truncatula HOM05D000540 ORTHO05D000681 1.4e-31 139.4 79 86.1
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.8e-31 139.0 79 83.5
HanXRQChr13g0413481 Helianthus annuus HOM05D000540 ORTHO05D008899 3.1e-31 138.3 74 90.5
Medtr4g051430 Medicago truncatula HOM05D000540 ORTHO05D000681 4.0e-31 137.9 79 86.1
HanXRQChr00c0451g0574831 Helianthus annuus HOM05D000540 ORTHO05D008899 1.5e-30 136.0 72 91.7
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 2.0e-30 135.6 82 81.7
ClCG00G001570 Citrullus lanatus HOM05D000540 ORTHO05D008899 4.4e-30 134.4 72 88.9
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 5.8e-30 134.0 74 86.5
Ciclev10010272m.g Citrus clementina HOM05D000540 ORTHO05D008899 1.7e-29 132.5 94 75.5
ClCG10G020130 Citrullus lanatus HOM05D000540 ORTHO05D008899 2.2e-29 132.1 94 73.4
Lsat_1_v5_gn_5_27661 Lactuca sativa HOM05D000540 ORTHO05D008899 1.4e-28 129.4 69 91.3
Lsat_1_v5_gn_7_82661 Lactuca sativa HOM05D000540 ORTHO05D008899 1.4e-28 129.4 69 91.3
GSVIVG01010311001 Vitis vinifera HOM05D000540 ORTHO05D008899 2.4e-28 128.6 63 96.8
GSVIVG01023244001 Vitis vinifera HOM05D000540 ORTHO05D008899 2.1e-27 125.6 86 70.9
Potri.011G074401 Populus trichocarpa HOM05D000540 ORTHO05D000681 4.6e-27 124.4 65 92.3
Nn021s41514 Nelumbo nucifera HOM05D000540 ORTHO05D008899 5.1e-26 120.9 77 79.2
Nn145s44091 Nelumbo nucifera HOM05D000540 ORTHO05D008899 5.1e-26 120.9 77 79.2
Nn3g16152 Nelumbo nucifera HOM05D000540 ORTHO05D008899 5.1e-26 120.9 77 79.2
HanXRQChr03g0073071 Helianthus annuus HOM05D000540 ORTHO05D008899 3.3e-25 118.2 63 88.9
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 4.3e-25 117.9 67 88.1
Migut.D01406 Erythranthe guttata HOM05D000540 ORTHO05D000681 5.6e-25 117.5 73 80.8
Nn1g04854 Nelumbo nucifera HOM05D000540 ORTHO05D008899 6.2e-24 114.0 59 93.2
HanXRQChr00c0126g0571811 Helianthus annuus HOM05D000540 ORTHO05D000681 1.4e-23 112.8 83 68.7
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.5e-22 109.4 61 86.9
CSS0033691 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 7.6e-22 107.1 60 85.0
CSS0035327 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 1.3e-21 106.3 53 94.3
HanXRQChr00c0512g0575371 Helianthus annuus HOM05D000540 ORTHO05D008899 1.4e-20 102.8 66 80.3
Peaxi162Scf00525g00033 Petunia axillaris HOM05D000540 ORTHO05D008899 1.9e-20 102.4 62 82.3
Nn1g08182 Nelumbo nucifera HOM05D000540 ORTHO05D008899 7.1e-20 100.5 49 95.9
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 1.2e-19 99.8 60 85.0
Nitab4.5_0004376g0180 Nicotiana tabacum HOM05D000540 ORTHO05D008899 2.1e-19 99.0 61 80.3
Lalb_Chr13g0292941 Lupinus albus HOM05D000540 ORTHO05D008899 2.3e-18 95.5 56 82.1
HanXRQChr07g0194921 Helianthus annuus HOM05D000540 ORTHO05D008899 6.6e-18 94.0 50 86.0
Lsat_1_v5_gn_3_85660 Lactuca sativa HOM05D000445 ORTHO05D008899 2.5e-17 92.0 50 84.0
vmacro07326 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 2.5e-17 92.0 61 75.4
TAR636G2296 Trochodendron aralioides HOM05D000216 ORTHO05D008899 3.3e-17 91.7 44 97.7
arahy.Tifrunner.gnm1.ann1.LF45NH Arachis hypogaea HOM05D000540 ORTHO05D000681 7.3e-17 90.5 55 81.8
Sed0017282 Sechium edule HOM05D000540 ORTHO05D000681 7.3e-17 90.5 44 95.5
Sed0006593 Sechium edule HOM05D000540 ORTHO05D000681 3.6e-16 88.2 44 93.2
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 3.1e-15 85.1 46 84.8
Gohir.D11G067360 Gossypium hirsutum HOM05D000540 ORTHO05D000681 8.9e-15 83.6 43 90.7
BraSC103t45440Z Brassica rapa HOM05D000540 ORTHO05D008899 1.2e-14 83.2 41 95.1
CiPaw.06G075700 Carya illinoinensis HOM05D000540 ORTHO05D008899 3.4e-14 81.6 70 64.3
Oeu062848.1 Olea europaea HOM05D000540 ORTHO05D008899 6.4e-13 77.4 84 53.6
EL10Ac9g22727 Beta vulgaris HOM05D000540 ORTHO05D008899 1.4e-12 76.3 41 87.8
Nn4g25231 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.9e-12 75.9 37 94.6
Medtr2g098600 Medicago truncatula HOM05D000540 ORTHO05D008899 5.4e-12 74.3 42 83.3
HanXRQChr00c0533g0575581 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-10 69.7 35 94.3
ClCG00G001500 Citrullus lanatus HOM05D000540 ORTHO05D008899 3.9e-10 68.2 37 89.2
SMO086G0037 Selaginella moellendorffii HOM05D000540 ORTHO05D008899 1.9e-09 65.9 89 40.4
CAN.G1690.3 Capsicum annuum HOM05D000540 ORTHO05D000681 2.1e-08 62.4 32 90.6
Migut.K00974 Erythranthe guttata HOM05D000540 ORTHO05D000681 3.1e-07 58.5 30 90.0
Cc06_g21660 Coffea canephora HOM05D000540 ORTHO05D008899 5.3e-07 57.8 40 60.0


User provided reference genes

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