Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO548G0027 Papaver somniferum HOM05D008622 ORTHO05D010757 2.0e-43 178.7 89 100.0
Nn020s41492 Nelumbo nucifera HOM05D008622 ORTHO05D010757 5.0e-39 164.1 84 97.6
CAN.G612.10 Capsicum annuum HOM05D008622 ORTHO05D010757 1.7e-34 149.1 89 86.5
CAN.G877.8 Capsicum annuum HOM05D008622 ORTHO05D010757 1.4e-33 146.0 89 85.4
PGR111G0016 Punica granatum HOM05D008622 ORTHO05D010757 1.4e-33 146.0 85 84.7
DCAR_032466 Daucus carota HOM05D008622 ORTHO05D010757 2.4e-33 145.2 78 91.0
Sed0001678 Sechium edule HOM05D008622 ORTHO05D010757 3.5e-32 141.4 84 84.5
Sed0011032 Sechium edule HOM05D008622 ORTHO05D010757 3.5e-32 141.4 84 84.5
Sed0018360 Sechium edule HOM05D008622 ORTHO05D010757 3.5e-32 141.4 84 84.5
C06p21400 Brassica napus HOM05D008622 ORTHO05D010757 2.2e-31 138.7 89 80.9
BolSC37t60776H Brassica oleracea HOM05D008622 ORTHO05D010757 2.2e-31 138.7 89 80.9
BolSC45t60930H Brassica oleracea HOM05D008622 ORTHO05D010757 2.2e-31 138.7 89 80.9
BraSC25t45888Z Brassica rapa HOM05D008622 ORTHO05D010757 2.2e-31 138.7 89 80.9
BraSC59t46518Z Brassica rapa HOM05D008622 ORTHO05D010757 2.2e-31 138.7 89 80.9
Gohir.1Z050166 Gossypium hirsutum HOM05D008622 ORTHO05D010757 2.2e-31 138.7 89 80.9
Peaxi162Scf00110g00044 Petunia axillaris HOM05D008622 ORTHO05D010757 2.7e-29 131.7 75 86.7
LjContig00318g0003846 Lotus japonicus HOM05D008622 ORTHO05D010757 3.6e-29 131.3 80 82.5
ATCG00050 Arabidopsis thaliana HOM05D008622 ORTHO05D010757 5.2e-28 127.5 79 79.7
MELO3C028501.2 Cucumis melo HOM05D008622 ORTHO05D010757 2.4e-25 118.6 61 91.8
LjContig00489g0025793 Lotus japonicus HOM05D008622 ORTHO05D010757 2.4e-25 118.6 74 81.1
Glyma.16G088900 Glycine max HOM05D008622 ORTHO05D010757 3.1e-25 118.2 74 78.4
Gohir.A12G078500 Gossypium hirsutum HOM05D008622 ORTHO05D010757 4.5e-24 114.4 66 83.3
CARHR281850 Cardamine hirsuta HOM05D008622 ORTHO05D010757 1.3e-23 112.8 68 79.4
HanXRQChr00c0496g0575161 Helianthus annuus HOM05D008622 ORTHO05D010757 2.2e-23 112.1 58 91.4
Gohir.D08G095680 Gossypium hirsutum HOM05D008622 ORTHO05D010757 3.8e-23 111.3 89 68.5
CiPaw.06G085000 Carya illinoinensis HOM05D008622 ORTHO05D010757 6.5e-23 110.5 75 74.7
Thhalv10028241m.g Eutrema salsugineum HOM05D008622 ORTHO05D010757 5.5e-22 107.5 63 84.1
Thhalv10001859m.g Eutrema salsugineum HOM05D008622 ORTHO05D010757 9.4e-22 106.7 64 85.9
Gorai.001G180700 Gossypium raimondii HOM05D008622 ORTHO05D010757 1.2e-21 106.3 61 83.6
Migut.H01168 Erythranthe guttata HOM05D008622 ORTHO05D010757 1.6e-21 105.9 66 77.3
Glyma.15G248550 Glycine max HOM05D008622 ORTHO05D010757 4.7e-21 104.4 61 85.2
Gorai.012G044100 Gossypium raimondii HOM05D008622 ORTHO05D010757 6.1e-21 104.0 58 84.5
BolSC49t61205H Brassica oleracea HOM05D008622 ORTHO05D010757 2.3e-20 102.1 60 88.3
BolSC29t60522H Brassica oleracea HOM05D008622 ORTHO05D010757 8.8e-20 100.1 61 85.2
BolSC44t60843H Brassica oleracea HOM05D008622 ORTHO05D010757 2.6e-19 98.6 59 86.4
BolSC45t60884H Brassica oleracea HOM05D008622 ORTHO05D010757 2.6e-19 98.6 59 86.4
BolSC46t60979H Brassica oleracea HOM05D008622 ORTHO05D010757 2.6e-19 98.6 59 86.4
Gohir.D06G105260 Gossypium hirsutum HOM05D008622 ORTHO05D010757 7.5e-19 97.1 61 75.4
Gorai.003G055400 Gossypium raimondii HOM05D008622 ORTHO05D010757 7.0e-17 90.5 47 91.5
CiPaw.01G059700 Carya illinoinensis HOM05D008622 ORTHO05D010757 1.2e-16 89.7 60 73.3
Sed0025419 Sechium edule HOM05D008622 ORTHO05D010757 1.0e-15 86.7 87 55.2
Solyc02g011995.1 Solanum lycopersicum HOM05D008622 ORTHO05D010757 1.9e-14 82.4 52 76.9
MCO08G152 Micromonas commoda HOM05D003175 ORTHO05D010757 3.6e-13 78.2 74 51.4
Nitab4.5_0016174g0030 Nicotiana tabacum HOM05D001325 ORTHO05D001540 3.0e-12 75.1 60 63.3
Cre12.g494450 Chlamydomonas reinhardtii HOM05D003175 ORTHO05D010757 5.2e-12 74.3 77 48.1
Nitab4.5_0004864g0050 Nicotiana tabacum HOM05D000540 ORTHO05D000681 5.2e-12 74.3 42 83.3
Nn4g25758 Nelumbo nucifera HOM05D008622 ORTHO05D010757 1.5e-11 72.8 37 91.9
ClCG00G002380 Citrullus lanatus HOM05D008622 ORTHO05D010757 2.6e-11 72.0 35 94.3
Potri.013G128200 Populus trichocarpa HOM05D003175 ORTHO05D003591 2.4e-09 65.5 86 43.0
Sabra13G0107100 Salix brachista HOM05D003175 ORTHO05D003591 3.1e-09 65.1 86 43.0
Aa31LG2G15900 Aethionema arabicum HOM05D003175 ORTHO05D003591 2.0e-08 62.4 87 39.1
AL7G16580 Arabidopsis lyrata HOM05D003175 ORTHO05D003591 2.0e-08 62.4 78 42.3
AT4G34620 Arabidopsis thaliana HOM05D003175 ORTHO05D003591 2.0e-08 62.4 86 38.4
BcaNung00682 Brassica carinata HOM05D003175 ORTHO05D003591 2.0e-08 62.4 78 42.3
BcaNung04917 Brassica carinata HOM05D003175 ORTHO05D003591 2.0e-08 62.4 78 42.3
BcaNung04920 Brassica carinata HOM05D003175 ORTHO05D003591 2.0e-08 62.4 78 42.3
A01p03870 Brassica napus HOM05D003175 ORTHO05D003591 2.0e-08 62.4 78 42.3
C01p04180 Brassica napus HOM05D003175 ORTHO05D003591 2.0e-08 62.4 78 42.3
BolC1t00406H Brassica oleracea HOM05D003175 ORTHO05D003591 2.0e-08 62.4 78 42.3
BraA01t00374Z Brassica rapa HOM05D003175 ORTHO05D003591 2.0e-08 62.4 78 42.3
Carub.0007s0566 Capsella rubella HOM05D003175 ORTHO05D003591 2.0e-08 62.4 78 42.3
Manes.05G131300 Manihot esculenta HOM05D003175 ORTHO05D003591 5.9e-08 60.8 86 37.2
SEGI_09210 Sequoiadendron giganteum HOM05D003175 ORTHO05D003591 1.0e-07 60.1 96 35.4
Pp3c11_14140 Physcomitrium patens HOM05D003175 ORTHO05D003591 1.7e-07 59.3 80 42.5
Pp3c2_38140 Physcomitrium patens HOM05D003175 ORTHO05D003591 2.3e-07 58.9 87 40.2
Thhalv10026606m.g Eutrema salsugineum HOM05D003175 ORTHO05D003591 2.9e-07 58.5 79 39.2
Sp7g32410 Schrenkiella parvula HOM05D003175 ORTHO05D003591 2.9e-07 58.5 78 39.7
PSO170G4980 Papaver somniferum HOM05D003175 ORTHO05D003591 1.1e-06 56.6 87 36.8
PSO384G0167 Papaver somniferum HOM05D003175 ORTHO05D003591 1.1e-06 56.6 87 36.8
Sed0010998 Sechium edule HOM05D003175 ORTHO05D003591 1.1e-06 56.6 87 34.5
GSVIVG01015186001 Vitis vinifera HOM05D003175 ORTHO05D003591 1.1e-06 56.6 87 35.6
FvH4_1g07750 Fragaria vesca HOM05D003175 ORTHO05D003591 1.5e-06 56.2 87 35.6
FAN19G2985 Fragaria x ananassa HOM05D003175 ORTHO05D003591 1.5e-06 56.2 87 35.6
RcHm_v2.0_Chr2g0093641 Rosa chinensis HOM05D003175 ORTHO05D003591 1.5e-06 56.2 87 35.6
Sed0014824 Sechium edule HOM05D003175 ORTHO05D003591 1.5e-06 56.2 87 35.6
TWI09G0130 Tripterygium wilfordii HOM05D003175 ORTHO05D003591 1.5e-06 56.2 87 35.6
TAR629G2636 Trochodendron aralioides HOM05D003175 ORTHO05D003591 1.5e-06 56.2 87 36.8
COL.COLO4_18186 Corchorus olitorius HOM05D003175 ORTHO05D003591 1.9e-06 55.8 87 35.6
MBI16_g10338_MAGBIO Magnolia biondii HOM05D003175 ORTHO05D003591 1.9e-06 55.8 87 35.6
PRCOL_00003143 Prasinoderma coloniale HOM05D003175 ORTHO05D003591 1.9e-06 55.8 86 36.0
Atru.chr8.2333 Acer truncatum HOM05D003175 ORTHO05D003591 2.5e-06 55.5 87 35.6
BraSC58t46475Z Brassica rapa HOM05D008622 ORTHO05D010757 2.5e-06 55.5 28 89.3
FAN26G0002 Fragaria x ananassa HOM05D003175 ORTHO05D003591 2.5e-06 55.5 87 34.5
FAN26G2348 Fragaria x ananassa HOM05D003175 ORTHO05D003591 2.5e-06 55.5 87 34.5
FAN28G0810 Fragaria x ananassa HOM05D003175 ORTHO05D003591 2.5e-06 55.5 87 34.5
MD02G1081900 Malus domestica HOM05D003175 ORTHO05D003591 2.5e-06 55.5 87 35.6
MD15G1209200 Malus domestica HOM05D003175 ORTHO05D003591 2.5e-06 55.5 87 35.6
Nn7g37004 Nelumbo nucifera HOM05D003175 ORTHO05D003591 2.5e-06 55.5 87 36.8
Nitab4.5_0004056g0030 Nicotiana tabacum HOM05D003175 ORTHO05D003591 2.5e-06 55.5 87 35.6
Peaxi162Scf01604g00008 Petunia axillaris HOM05D003175 ORTHO05D003591 2.5e-06 55.5 87 35.6
Prupe.7G207200 Prunus persica HOM05D003175 ORTHO05D003591 2.5e-06 55.5 87 35.6
Solyc07g008660.3 Solanum lycopersicum HOM05D003175 ORTHO05D003591 2.5e-06 55.5 87 35.6
Sopen07g004590 Solanum pennellii HOM05D003175 ORTHO05D003591 2.5e-06 55.5 87 35.6
ATR0626G012 Amborella trichopoda HOM05D003175 ORTHO05D003591 3.3e-06 55.1 87 36.8
Lalb_Chr07g0180911 Lupinus albus HOM05D003175 ORTHO05D003591 3.3e-06 55.1 78 35.9
Nitab4.5_0001519g0020 Nicotiana tabacum HOM05D003175 ORTHO05D003591 3.3e-06 55.1 87 35.6
Phvul.009G231300 Phaseolus vulgaris HOM05D003175 ORTHO05D003591 3.3e-06 55.1 87 34.5
ClCG03G015450 Citrullus lanatus HOM05D003175 ORTHO05D003591 4.3e-06 54.7 87 35.6
Ciclev10013100m.g Citrus clementina HOM05D003175 ORTHO05D003591 4.3e-06 54.7 87 34.5
Manes.01G198600 Manihot esculenta HOM05D003175 ORTHO05D003591 4.3e-06 54.7 87 34.5
Mapoly0011s0195 Marchantia polymorpha HOM05D003175 ORTHO05D003591 4.3e-06 54.7 82 37.8
Nitab4.5_0001586g0160 Nicotiana tabacum HOM05D003175 ORTHO05D003591 4.3e-06 54.7 87 35.6
Nitab4.5_0002593g0030 Nicotiana tabacum HOM05D003175 ORTHO05D003591 4.3e-06 54.7 87 35.6
PSO063G6037 Papaver somniferum HOM05D003175 ORTHO05D003591 4.3e-06 54.7 87 36.8
PSO384G0269 Papaver somniferum HOM05D003175 ORTHO05D003591 4.3e-06 54.7 87 35.6
QL01p015391 Quercus lobata HOM05D003175 ORTHO05D003591 4.3e-06 54.7 86 36.0
SGA_v2.0_scaffold40G15473 Striga asiatica HOM05D003175 ORTHO05D003591 4.3e-06 54.7 87 34.5
FAN23G2612 Fragaria x ananassa HOM05D003175 ORTHO05D003591 5.6e-06 54.3 87 33.3
Lalb_Chr08g0232311 Lupinus albus HOM05D003175 ORTHO05D003591 5.6e-06 54.3 87 34.5
PSO063G1429 Papaver somniferum HOM05D003175 ORTHO05D003591 5.6e-06 54.3 86 38.4
Pp3c1_7830 Physcomitrium patens HOM05D003175 ORTHO05D003591 5.6e-06 54.3 80 40.0
HPP92_004704 Vanilla planifolia HOM05D003175 ORTHO05D003591 5.6e-06 54.3 86 36.0
Aqoxy7G02783 Aquilegia oxysepala HOM05D003175 ORTHO05D003591 7.3e-06 53.9 87 35.6
arahy.Tifrunner.gnm1.ann1.24WPAI Arachis hypogaea HOM05D003175 ORTHO05D003591 7.3e-06 53.9 87 33.3
arahy.Tifrunner.gnm1.ann1.TVN50Z Arachis hypogaea HOM05D003175 ORTHO05D003591 7.3e-06 53.9 87 33.3
Migut.J00455 Erythranthe guttata HOM05D003175 ORTHO05D003591 7.3e-06 53.9 87 33.3
Glyma.09G064500 Glycine max HOM05D003175 ORTHO05D003591 7.3e-06 53.9 87 33.3
Glyma.15G170800 Glycine max HOM05D003175 ORTHO05D003591 7.3e-06 53.9 87 33.3
HanXRQChr10g0319441 Helianthus annuus HOM05D003175 ORTHO05D003591 7.3e-06 53.9 87 33.3
Medtr2g039750 Medicago truncatula HOM05D003175 ORTHO05D003591 7.3e-06 53.9 86 33.7
PSO384G5082 Papaver somniferum HOM05D003175 ORTHO05D003591 7.3e-06 53.9 87 35.6
QL02p062322 Quercus lobata HOM05D003175 ORTHO05D003591 7.3e-06 53.9 87 33.3
TPR.G13431 Trifolium pratense HOM05D003175 ORTHO05D003591 7.3e-06 53.9 86 33.7
TWI53G2020 Tripterygium wilfordii HOM05D003175 ORTHO05D003591 7.3e-06 53.9 85 32.9
VMungo0251G0584 Vigna mungo HOM05D003175 ORTHO05D003591 7.3e-06 53.9 87 33.3
Actinidia38453 Actinidia chinensis HOM05D003175 ORTHO05D003591 9.5e-06 53.5 72 40.3
Gohir.A10G064800 Gossypium hirsutum HOM05D003175 ORTHO05D003591 9.5e-06 53.5 87 34.5
Gohir.D05G031900 Gossypium hirsutum HOM05D003175 ORTHO05D003591 9.5e-06 53.5 87 34.5
Gohir.D10G066300 Gossypium hirsutum HOM05D003175 ORTHO05D003591 9.5e-06 53.5 87 34.5
Gorai.009G032100 Gossypium raimondii HOM05D003175 ORTHO05D003591 9.5e-06 53.5 87 34.5
Gorai.011G070400 Gossypium raimondii HOM05D003175 ORTHO05D003591 9.5e-06 53.5 87 34.5
Potri.004G217400 Populus trichocarpa HOM05D003175 ORTHO05D003591 9.5e-06 53.5 87 34.5
SMO119G0404 Selaginella moellendorffii HOM05D003175 ORTHO05D003591 9.5e-06 53.5 86 36.0
THA.LOC104804346 Tarenaya hassleriana HOM05D003175 ORTHO05D003591 9.5e-06 53.5 78 37.2


User provided reference genes

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