Gene: AT4G34620

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G34620
  • Transcript Identifier AT4G34620.1
  • Gene Type Coding gene
  • Location Chr4 : 16535084-16536092 : negative

Gene Family Information

  • ID HOM05D003175
  • #Genes/#Species 215/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G34620.1
  • symbol SSR16
  • uniprot O65686

Descriptions

  • Description small subunit ribosomal protein 16
  • Computational description small subunit ribosomal protein 16 (SSR16); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis, embryo development ending in seed dormancy; LOCATED IN: ribosome, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S16 (InterPro:IPR000307); BEST Arabidopsis thaliana protein match is: Ribosomal protein S16 family protein (TAIR:AT5G56940.1); Has 8683 Blast hits to 8683 proteins in 3031 species: Archae - 0; Bacteria - 5404; Metazoa - 128; Fungi - 129; Plants - 717; Viruses - 0; Other Eukaryotes - 2305 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006412
IEA
Gene Ontologytranslation
GO:0006412
IEA
InterProtranslation
GO:0009793
IMP
Gene Ontologyembryo development ending in seed dormancy1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003735
IEA
GOA Databasestructural constituent of ribosome
GO:0003735
ISS, IBA
Gene Ontologystructural constituent of ribosome1 2
GO:0003735
IEA
InterProstructural constituent of ribosome
GO:0019904
IPI
GOA Databaseprotein domain specific binding
GO:0003729
IDA
Gene OntologymRNA binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005840
IEA
GOA Databaseribosome
GO:0005840
TAS
Gene Ontologyribosome1
GO:0005840
IEA
InterProribosome
GO:0009536
IEA
GOA Databaseplastid
GO:0009536
IDA
Gene Ontologyplastid4
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
Gene Ontologychloroplast5
GO:0009941
IDA
GOA Databasechloroplast envelope
GO:0009941
HDA
Gene Ontologychloroplast envelope6
GO:0005739
ISM
Gene Ontologymitochondrion
GO:0015935
IBA
Gene Ontologysmall ribosomal subunit2
GO:0005886
HDA
Gene Ontologyplasma membrane7

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000307 Ribosomal protein S16
IPR023803 Ribosomal protein S16 domain superfamily
Mapman id Description
17.7.1.2.14 Protein biosynthesis.organelle machinery.mitochondrial ribosome.small ribosomal subunit proteome.component mtRPS16