Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 1.9e-68 262.3 126 100.0
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 5.5e-68 260.8 126 99.2
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 9.8e-49 196.8 126 72.2
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 4.1e-47 191.4 126 72.2
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 2.7e-46 188.7 125 69.6
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 1.9e-39 166.0 127 59.8
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 4.6e-38 161.4 127 59.8
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 4.6e-38 161.4 127 60.6
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 9.5e-36 153.7 127 55.9
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 1.4e-34 149.8 124 57.3
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 1.8e-34 149.4 127 55.9
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 9.9e-33 143.7 124 56.5
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 1.3e-32 143.3 124 54.0
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 1.7e-32 142.9 125 59.2
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 2.9e-32 142.1 128 56.2
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 6.4e-32 141.0 130 56.2
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 1.9e-31 139.4 126 54.0
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 1.9e-31 139.4 124 51.6
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 2.4e-31 139.0 124 51.6
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 2.4e-31 139.0 124 56.5
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 4.1e-31 138.3 130 56.9
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 5.4e-31 137.9 128 50.8
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 9.2e-31 137.1 125 57.6
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 2.1e-30 136.0 124 55.6
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 2.7e-30 135.6 124 54.8
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 2.7e-30 135.6 124 50.8
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 4.6e-30 134.8 125 54.4
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 4.6e-30 134.8 125 53.6
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 4.6e-30 134.8 125 55.2
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 7.8e-30 134.0 125 54.4
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 1.0e-29 133.7 122 51.6
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.3e-29 133.3 124 53.2
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 2.3e-29 132.5 124 52.4
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 3.0e-29 132.1 122 52.5
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 5.1e-29 131.3 128 50.0
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 5.1e-29 131.3 126 49.2
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 5.1e-29 131.3 126 49.2
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 6.6e-29 131.0 126 48.4
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 8.6e-29 130.6 126 48.4
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 1.9e-28 129.4 126 50.0
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 5.6e-28 127.9 126 51.6
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 5.6e-28 127.9 126 48.4
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 5.6e-28 127.9 126 48.4
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 7.3e-28 127.5 123 52.0
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 7.3e-28 127.5 124 46.8
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 7.3e-28 127.5 91 63.7
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 1.2e-27 126.7 127 48.0
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 1.2e-27 126.7 125 52.0
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 1.2e-27 126.7 125 51.2
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 1.2e-27 126.7 126 47.6
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 1.2e-27 126.7 125 51.2
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.2e-27 126.7 119 53.8
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 1.6e-27 126.3 126 50.8
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 1.6e-27 126.3 119 51.3
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 2.1e-27 125.9 90 63.3
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 3.6e-27 125.2 124 47.6
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 3.6e-27 125.2 127 51.2
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 3.6e-27 125.2 115 53.0
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 3.6e-27 125.2 124 51.6
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 4.7e-27 124.8 124 46.8
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 8.1e-27 124.0 122 50.8
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 1.4e-26 123.2 124 48.4
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 1.4e-26 123.2 123 48.0
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 3.1e-26 122.1 78 71.8
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 4.0e-26 121.7 124 48.4
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 4.0e-26 121.7 124 50.8
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 4.0e-26 121.7 124 50.8
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 4.0e-26 121.7 124 50.8
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 6.8e-26 120.9 123 49.6
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 6.8e-26 120.9 123 49.6
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 6.8e-26 120.9 126 47.6
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 8.9e-26 120.6 123 49.6
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 8.9e-26 120.6 123 49.6
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 8.9e-26 120.6 123 49.6
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 8.9e-26 120.6 123 49.6
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 8.9e-26 120.6 123 49.6
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 1.2e-25 120.2 124 47.6
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 1.2e-25 120.2 123 49.6
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 1.5e-25 119.8 117 48.7
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 1.5e-25 119.8 124 47.6
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 2.0e-25 119.4 123 49.6
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 2.0e-25 119.4 125 51.2
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 2.0e-25 119.4 123 49.6
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 3.4e-25 118.6 123 48.0
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 3.4e-25 118.6 123 48.0
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 4.4e-25 118.2 123 49.6
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 5.8e-25 117.9 123 48.0
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 5.8e-25 117.9 128 48.4
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 7.6e-25 117.5 123 48.0
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 7.6e-25 117.5 123 48.0
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 7.6e-25 117.5 123 44.7
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 9.9e-25 117.1 123 48.8
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 9.9e-25 117.1 117 46.2
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 1.3e-24 116.7 123 48.0
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 2.9e-24 115.5 119 46.2
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 6.4e-24 114.4 126 42.9
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 8.4e-24 114.0 123 47.2
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 1.1e-23 113.6 115 49.6
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 9.3e-23 110.5 124 40.3
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 9.3e-23 110.5 155 39.4
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 3.5e-22 108.6 124 41.1
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 1.3e-21 106.7 113 46.0
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 6.6e-21 104.4 122 45.1
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 2.8e-19 99.0 116 43.1
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 5.3e-18 94.7 122 39.3
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 6.9e-18 94.4 110 47.3
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 1.5e-17 93.2 122 38.5
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 4.9e-16 88.2 82 54.9
AUR62041475 Chenopodium quinoa HOM05D005168 ORTHO05D006358 1.9e-15 86.3 74 55.4
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 2.4e-15 85.9 118 42.4
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 2.4e-15 85.9 105 40.0
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 4.2e-15 85.1 124 39.5
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 1.2e-14 83.6 103 39.8
CBR_g23850 Chara braunii HOM05D005168 ORTHO05D006358 2.1e-14 82.8 87 47.1
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 2.7e-14 82.4 87 48.3
Ah.01g021000 Amaranthus hybridus HOM05D005168 ORTHO05D006358 7.9e-14 80.9 67 58.2
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 3.0e-13 79.0 84 45.2
AUR62040557 Chenopodium quinoa HOM05D005168 ORTHO05D006358 8.7e-13 77.4 67 53.7
MCO15G369 Micromonas commoda HOM05D005168 ORTHO05D006358 7.4e-12 74.3 133 35.3
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 2.8e-11 72.4 54 61.1
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 4.8e-11 71.6 64 56.2
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 1.8e-10 69.7 61 57.4
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 2.4e-10 69.3 53 52.8
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 7.6e-09 64.3 95 38.9
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 7.6e-09 64.3 55 50.9
SHI17132 Sapria himalayana HOM05D005168 ORTHO05D006358 1.3e-08 63.5 39 61.5
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.7e-08 63.2 45 66.7
Lj4A21T59 Lonicera japonica HOM05D005168 ORTHO05D006358 2.2e-08 62.8 79 44.3
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 1.4e-07 60.1 118 33.1
Glyma.08G246200 Glycine max HOM05D005168 ORTHO05D006358 4.2e-07 58.5 48 47.9
Glyma.06G213500 Glycine max HOM05D005168 ORTHO05D006358 5.5e-07 58.2 71 42.3
Medtr7g116750 Medicago truncatula HOM05D006029 ORTHO05D007439 5.5e-07 58.2 124 33.9
ECA238G0944 Erigeron canadensis HOM05D005168 ORTHO05D006358 9.3e-07 57.4 78 41.0
Glyma.17G201200 Glycine max HOM05D005168 ORTHO05D006358 9.3e-07 57.4 71 42.3
ClCG08G014170 Citrullus lanatus HOM05D005168 ORTHO05D006358 1.2e-06 57.0 40 62.5
Glyma.08G301902 Glycine max HOM05D005168 ORTHO05D006358 1.2e-06 57.0 73 41.1
FAN26G0870 Fragaria x ananassa HOM05D005168 ORTHO05D006358 3.5e-06 55.5 75 36.0
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 7.9e-06 54.3 130 32.3


User provided reference genes

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