Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G4192 Papaver somniferum HOM05D004966 ORTHO05D006199 0.0e+00 1366.7 1042 100.0
PSO675G4881 Papaver somniferum HOM05D004966 ORTHO05D006199 0.0e+00 1317.8 1042 97.6
TAR625G0217 Trochodendron aralioides HOM05D004966 ORTHO05D006199 2.4e-278 962.6 1043 75.8
Aqoxy6G02774 Aquilegia oxysepala HOM05D004966 ORTHO05D006199 1.3e-271 940.3 1041 74.7
Actinidia32817 Actinidia chinensis HOM05D004966 ORTHO05D006199 5.6e-267 924.9 1059 71.0
Nn5g30492 Nelumbo nucifera HOM05D004966 ORTHO05D006199 2.9e-263 912.5 1043 71.9
Nitab4.5_0000868g0040 Nicotiana tabacum HOM05D004966 ORTHO05D006199 1.8e-257 893.3 1055 69.8
Thecc.01G067600 Theobroma cacao HOM05D004966 ORTHO05D006199 9.0e-257 891.0 1100 66.2
Cc07_g06700 Coffea canephora HOM05D004966 ORTHO05D006199 2.6e-256 889.4 1059 68.3
Rhsim08G0096300 Rhododendron simsii HOM05D004966 ORTHO05D006199 3.4e-256 889.0 1078 70.4
Cfa004090 Carpinus fangiana HOM05D004966 ORTHO05D006199 5.9e-256 888.3 1045 73.7
Prupe.6G225100 Prunus persica HOM05D004966 ORTHO05D006199 5.9e-256 888.3 1042 68.8
Duzib147G1627 Durio zibethinus HOM05D004966 ORTHO05D006199 2.2e-255 886.3 1107 65.7
MD02G1181200 Malus domestica HOM05D004966 ORTHO05D006199 8.5e-255 884.4 1065 67.2
RcHm_v2.0_Chr2g0107271 Rosa chinensis HOM05D004966 ORTHO05D006199 1.9e-254 883.2 1078 69.1
Ca_24712_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 3.2e-254 882.5 1040 67.9
Ca_24727_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 3.2e-254 882.5 1040 67.9
Eucgr.I00728 Eucalyptus grandis HOM05D004966 ORTHO05D006199 1.6e-253 880.2 1046 67.0
Manes.12G112800 Manihot esculenta HOM05D004966 ORTHO05D006199 1.6e-253 880.2 1097 66.1
Hma1.2p1_0017F.1_g012040 Hydrangea macrophylla HOM05D004966 ORTHO05D006199 4.6e-253 878.6 1042 69.6
CSS0024631 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.0e-252 877.5 1075 72.1
Gohir.A11G217900 Gossypium hirsutum HOM05D004966 ORTHO05D006199 1.3e-252 877.1 1113 64.9
Gorai.007G220700 Gossypium raimondii HOM05D004966 ORTHO05D006199 1.8e-252 876.7 1109 65.0
Glyma.17G164600 Glycine max HOM05D004966 ORTHO05D006199 2.3e-252 876.3 1053 66.9
Gohir.D11G205500 Gossypium hirsutum HOM05D004966 ORTHO05D006199 9.7e-251 870.9 1109 64.8
PGR004G2163 Punica granatum HOM05D004966 ORTHO05D006199 1.6e-250 870.2 1053 66.9
Sopen02g037320 Solanum pennellii HOM05D004966 ORTHO05D006199 1.6e-250 870.2 1055 68.5
Glyma.05G102400 Glycine max HOM05D004966 ORTHO05D006199 3.7e-250 869.0 1038 67.4
Oeu013276.1 Olea europaea HOM05D004966 ORTHO05D006199 3.7e-250 869.0 1049 58.0
Atru.chr3.210 Acer truncatum HOM05D004966 ORTHO05D006199 4.8e-250 868.6 1103 65.5
COL.COLO4_11522 Corchorus olitorius HOM05D004966 ORTHO05D006199 2.0e-248 863.2 1125 66.2
Ciclev10024760m.g Citrus clementina HOM05D004966 ORTHO05D006199 2.6e-248 862.8 1106 64.2
Sc16g0004960 Simmondsia chinensis HOM05D004966 ORTHO05D006199 4.5e-248 862.1 1045 68.3
Hund16378 Selenicereus undatus HOM05D004966 ORTHO05D006199 5.9e-248 861.7 1043 68.4
CANSAT01G2710 Cannabis sativa HOM05D004966 ORTHO05D006199 1.3e-247 860.5 1044 68.2
Lj2g0010110 Lotus japonicus HOM05D004966 ORTHO05D006199 1.7e-247 860.1 1045 66.0
Haze_15324 Corylus avellana HOM05D004966 ORTHO05D006199 3.8e-247 859.0 1046 75.2
Phvul.003G238000 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 3.8e-247 859.0 1042 66.9
Potri.007G052200 Populus trichocarpa HOM05D004966 ORTHO05D006199 5.0e-247 858.6 1104 65.1
VMungo0251G2147 Vigna mungo HOM05D004966 ORTHO05D006199 5.0e-247 858.6 1042 66.3
Solyc02g092780.3 Solanum lycopersicum HOM05D004966 ORTHO05D006199 6.5e-247 858.2 1055 68.2
Sed0025120 Sechium edule HOM05D004966 ORTHO05D006199 1.4e-246 857.1 1052 66.5
TPR.G20946 Trifolium pratense HOM05D004966 ORTHO05D006199 7.2e-246 854.7 1048 66.2
Migut.H00376 Erythranthe guttata HOM05D004966 ORTHO05D006199 1.2e-245 854.0 1037 67.5
ECA238G2979 Erigeron canadensis HOM05D004966 ORTHO05D006199 2.1e-245 853.2 1055 65.7
CsaV3_6G043790 Cucumis sativus L. HOM05D004966 ORTHO05D006199 3.6e-245 852.4 1047 65.4
Glyma.01G191100 Glycine max HOM05D004966 ORTHO05D006199 1.8e-244 850.1 1046 66.7
arahy.Tifrunner.gnm1.ann1.138YHT Arachis hypogaea HOM05D004966 ORTHO05D006199 1.1e-243 847.4 1050 64.7
Sabra07G0045800 Salix brachista HOM05D004966 ORTHO05D006199 1.3e-242 844.0 1111 65.3
EL10Ac6g15665 Beta vulgaris HOM05D004966 ORTHO05D006199 1.7e-242 843.6 1048 66.7
Medtr5g016190 Medicago truncatula HOM05D004966 ORTHO05D006199 4.8e-242 842.0 1058 65.4
TWI09G0336 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 4.8e-242 842.0 1103 64.4
HanXRQChr14g0441841 Helianthus annuus HOM05D004966 ORTHO05D006199 8.2e-242 841.3 1041 66.2
Lj4g0015306 Lotus japonicus HOM05D004966 ORTHO05D006199 1.4e-241 840.5 1040 66.2
TWI73G0630 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 1.2e-240 837.4 1107 64.0
MSTRG.23699 Avicennia marina HOM05D004966 ORTHO05D006199 3.4e-240 835.9 1053 65.7
GSVIVG01000163001 Vitis vinifera HOM05D004966 ORTHO05D006199 7.7e-240 834.7 1042 68.4
A01p01480 Brassica napus HOM05D004966 ORTHO05D006199 2.9e-239 832.8 1047 63.6
THA.LOC104807611 Tarenaya hassleriana HOM05D004966 ORTHO05D006199 3.8e-239 832.4 1081 63.4
BcaNung05081 Brassica carinata HOM05D004966 ORTHO05D006199 1.1e-238 830.9 1053 63.2
FvH4_1g17100 Fragaria vesca HOM05D004966 ORTHO05D006199 1.4e-238 830.5 1077 66.9
FAN19G1580 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.4e-238 830.5 1077 66.9
C01p01650 Brassica napus HOM05D004966 ORTHO05D006199 2.1e-237 826.6 1059 62.6
BolC1t00159H Brassica oleracea HOM05D004966 ORTHO05D006199 4.7e-237 825.5 1059 62.6
AL7G13330 Arabidopsis lyrata HOM05D004966 ORTHO05D006199 1.0e-236 824.3 1051 62.8
BraA01t00142Z Brassica rapa HOM05D004966 ORTHO05D006199 3.0e-236 822.8 1055 59.7
Lsat_1_v5_gn_2_83581 Lactuca sativa HOM05D004966 ORTHO05D006199 1.7e-234 817.0 1040 65.1
DCAR_010836 Daucus carota HOM05D004966 ORTHO05D006199 2.8e-234 816.2 1080 66.5
Carub.0007s0282 Capsella rubella HOM05D004966 ORTHO05D006199 2.4e-233 813.1 1081 61.4
arahy.Tifrunner.gnm1.ann1.EHFU3U Arachis hypogaea HOM05D004966 ORTHO05D006199 2.5e-230 803.1 1042 64.7
FAN26G1585 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.2e-229 800.8 1066 67.0
arahy.Tifrunner.gnm1.ann1.E3XCDG Arachis hypogaea HOM05D004966 ORTHO05D006199 1.6e-229 800.4 1042 64.4
AUR62038275 Chenopodium quinoa HOM05D004966 ORTHO05D006199 2.7e-229 799.7 1046 65.2
SGA_v2.0_scaffold15G07400 Striga asiatica HOM05D004966 ORTHO05D006199 4.7e-229 798.9 1134 44.8
FAN28G1348 Fragaria x ananassa HOM05D004966 ORTHO05D006199 6.7e-228 795.0 1068 66.0
Lj4C159G2 Lonicera japonica HOM05D004966 ORTHO05D006199 3.3e-227 792.7 1051 64.9
Duzib187G0681 Durio zibethinus HOM05D004966 ORTHO05D006199 5.7e-227 792.0 1108 62.5
Lalb_Chr05g0226061 Lupinus albus HOM05D004966 ORTHO05D006199 9.7e-227 791.2 1059 64.7
Aa31LG6G14330 Aethionema arabicum HOM05D004966 ORTHO05D006199 1.1e-225 787.7 1075 60.7
BcaNung03662 Brassica carinata HOM05D004966 ORTHO05D006199 1.4e-225 787.3 1023 62.7
vmacro17983 Vaccinium macrocarpon HOM05D004966 ORTHO05D006199 2.7e-224 783.1 1210 46.2
AT4G37460 Arabidopsis thaliana HOM05D004966 ORTHO05D006199 4.2e-222 775.8 1054 60.7
AUR62003963 Chenopodium quinoa HOM05D004966 ORTHO05D006199 4.2e-222 775.8 1042 65.1
MELO3C007603.2 Cucumis melo HOM05D004966 ORTHO05D006199 1.2e-219 767.7 1061 58.1
arahy.Tifrunner.gnm1.ann1.E99DR7 Arachis hypogaea HOM05D004966 ORTHO05D006199 3.7e-218 762.7 1050 61.6
Nitab4.5_0001439g0170 Nicotiana tabacum HOM05D004966 ORTHO05D006199 7.0e-217 758.4 1055 64.1
CARHR245860 Cardamine hirsuta HOM05D004966 ORTHO05D006199 1.0e-215 754.6 1066 59.3
CiPaw.01G008200 Carya illinoinensis HOM05D004966 ORTHO05D006199 3.8e-215 752.7 484 72.9
Psat2g169880 Pisum sativum HOM05D004966 ORTHO05D006199 3.7e-210 736.1 786 76.8
MBI16_g06665_MAGBIO Magnolia biondii HOM05D004966 ORTHO05D006199 7.8e-208 728.4 487 71.7
MD15G1292200 Malus domestica HOM05D004966 ORTHO05D006199 2.9e-207 726.5 487 70.6
CAN.G1075.3 Capsicum annuum HOM05D004966 ORTHO05D006199 2.1e-205 720.3 486 70.2
Zm00001eb118220 Zea mays HOM05D004966 ORTHO05D006199 5.2e-204 715.7 1040 53.8
Os07g0113700 Oryza sativa ssp. japonica HOM05D004966 ORTHO05D006199 1.7e-202 710.7 1038 56.2
Phvul.002G013932 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 2.3e-199 700.3 484 69.8
ClCG01G017250 Citrullus lanatus HOM05D004966 ORTHO05D006199 2.5e-198 696.8 1051 60.7
SEGI_23316 Sequoiadendron giganteum HOM05D004966 ORTHO05D006199 3.3e-198 696.4 1042 60.5
Dinv30059 Davidia involucrata HOM05D004966 ORTHO05D006199 5.6e-198 695.7 928 71.1
CSS0020625 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.6e-192 677.6 793 62.7
Peaxi162Scf00264g00044 Petunia axillaris HOM05D004966 ORTHO05D006199 2.4e-185 653.7 979 58.5
ATR0661G243 Amborella trichopoda HOM05D004966 ORTHO05D006199 2.9e-178 630.2 482 62.9
TAR381G1622 Trochodendron aralioides HOM05D004966 ORTHO05D006199 8.4e-170 602.1 839 75.4
Thhalv10024286m.g Eutrema salsugineum HOM05D004966 ORTHO05D006199 8.7e-159 565.5 912 60.0
unitig_62.g23418 Utricularia gibba HOM05D004966 ORTHO05D006199 3.4e-155 553.5 981 53.9
Pp3c2_36070 Physcomitrium patens HOM05D004966 ORTHO05D006199 2.9e-138 497.3 1038 44.8
Mapoly0153s0004 Marchantia polymorpha HOM05D004966 ORTHO05D006199 2.0e-131 474.6 1036 46.2
Ah.03g146320 Amaranthus hybridus HOM05D004966 ORTHO05D006199 2.6e-131 474.2 441 56.0
Lalb_Chr16g0389071 Lupinus albus HOM05D004966 ORTHO05D006199 3.1e-116 424.1 771 65.2
Lalb_Chr16g0389061 Lupinus albus HOM05D004966 ORTHO05D006199 5.4e-100 370.2 253 66.8
CBR_g36368 Chara braunii HOM05D004966 ORTHO05D006199 8.0e-96 356.3 537 39.3
Dinv26891 Davidia involucrata HOM05D004966 ORTHO05D006199 9.2e-84 316.2 204 71.1
BolC7t46655H Brassica oleracea HOM05D004966 ORTHO05D006199 1.2e-83 315.8 499 42.1
Cpa.g.sc1082.1 Carica papaya HOM05D004966 ORTHO05D006199 4.7e-80 303.9 202 71.3
Sp7g35120 Schrenkiella parvula HOM05D004966 ORTHO05D006199 2.2e-77 295.0 704 53.8
Cre01.g021450 Chlamydomonas reinhardtii HOM05D004966 ORTHO05D006199 1.3e-66 259.2 458 36.2
BcaNung02943 Brassica carinata HOM05D004966 ORTHO05D006199 5.6e-65 253.8 165 73.9
MD15G1292300 Malus domestica HOM05D004966 ORTHO05D006199 3.6e-64 251.1 333 45.3
CAN.G1075.4 Capsicum annuum HOM05D004966 ORTHO05D006199 3.4e-62 244.6 347 44.4
Duzib264G0118 Durio zibethinus HOM05D004966 ORTHO05D006199 6.6e-58 230.3 269 49.1
FAN23G2362 Fragaria x ananassa HOM05D004966 ORTHO05D006199 5.6e-57 227.3 357 50.7
C07p62400 Brassica napus HOM05D004966 ORTHO05D006199 2.1e-56 225.3 498 34.7
CiPaw.01G008100 Carya illinoinensis HOM05D004966 ORTHO05D006199 6.6e-50 203.8 155 68.4
Cpa.g.sc6.59 Carica papaya HOM05D004966 ORTHO05D006199 2.0e-46 192.2 135 71.1
BcaNung02944 Brassica carinata HOM05D004966 ORTHO05D006199 3.2e-44 184.9 136 58.8
Cpa.g.sc6.60 Carica papaya HOM05D004966 ORTHO05D006199 1.3e-42 179.5 99 79.8
Glyma.11G051133 Glycine max HOM05D004966 ORTHO05D006199 2.3e-34 152.1 191 44.5
A03p65150 Brassica napus HOM05D004966 ORTHO05D006199 4.3e-33 147.9 130 58.5
BraA03t15573Z Brassica rapa HOM05D004966 ORTHO05D006199 7.4e-33 147.1 130 58.5
Glyma.11G051067 Glycine max HOM05D004966 ORTHO05D006199 9.6e-33 146.7 111 67.6
CSS0022043 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 6.2e-32 144.1 112 67.0
CSS0040429 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 3.8e-29 134.8 93 73.1
Ah.03g146310 Amaranthus hybridus HOM05D004966 ORTHO05D006199 9.3e-28 130.2 93 71.0
CSS0006661 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 3.5e-27 128.3 74 73.0
RcHm_v2.0_Chr1g0315291 Rosa chinensis HOM05D004966 ORTHO05D006199 8.7e-26 123.6 76 78.9
BcaNung02945 Brassica carinata HOM05D004966 ORTHO05D006199 1.4e-23 116.3 93 62.4
BcaNung02055 Brassica carinata HOM05D004966 ORTHO05D006199 2.9e-21 108.6 105 59.0
Phvul.002G013866 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 7.2e-20 104.0 94 56.4
Oeu011609.3 Olea europaea HOM05D004966 ORTHO05D006199 4.1e-15 88.2 129 41.9
ATR0030G036 Amborella trichopoda HOM05D004966 ORTHO05D006199 2.0e-14 85.9 120 42.5
CSS0042095 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 7.7e-14 84.0 49 77.6
CBR_g36362 Chara braunii HOM05D004966 ORTHO05D006199 6.1e-11 74.3 148 34.5
HanXRQChr06g0176501 Helianthus annuus HOM05D004966 ORTHO05D006199 4.1e-07 61.6 36 77.8
ATR0030G038 Amborella trichopoda HOM05D047453 ORTHO05D006199 4.5e-06 58.2 47 59.6
Lsat_1_v5_gn_8_118440 Lactuca sativa HOM05D004966 ORTHO05D231273 4.5e-06 58.2 48 47.9
CSS0024681 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 5.9e-06 57.8 43 60.5


User provided reference genes

Program Settings