Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 1.6e-234 815.8 444 100.0
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 3.0e-209 731.9 455 89.5
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 5.6e-208 727.6 451 90.2
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 5.3e-166 588.2 439 77.2
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 2.0e-152 543.1 421 72.9
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.0e-136 490.0 452 64.2
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 4.7e-130 468.8 464 58.0
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 2.0e-128 463.4 452 58.2
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 2.6e-128 463.0 452 61.5
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 7.8e-125 451.4 304 83.2
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 2.3e-124 449.9 461 57.9
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 3.3e-123 446.0 448 56.7
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 4.3e-123 445.7 462 58.0
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 3.6e-122 442.6 464 56.5
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 3.6e-122 442.6 458 58.1
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 2.3e-121 439.9 467 58.5
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 3.1e-121 439.5 450 56.4
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 5.2e-121 438.7 456 56.4
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 5.2e-121 438.7 463 56.2
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 1.5e-120 437.2 456 57.9
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 2.6e-120 436.4 456 58.3
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 1.4e-118 430.6 455 54.7
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 1.2e-117 427.6 455 56.9
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 7.8e-117 424.9 466 54.5
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 1.0e-116 424.5 453 55.2
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 2.3e-116 423.3 442 58.6
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 6.6e-116 421.8 459 54.5
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 1.1e-115 421.0 459 54.5
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 1.9e-115 420.2 445 55.5
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 1.6e-114 417.2 457 52.3
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 2.1e-114 416.8 459 54.7
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 8.1e-114 414.8 454 54.2
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 1.1e-113 414.5 454 54.8
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 1.4e-113 414.1 453 54.5
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 6.8e-113 411.8 455 55.4
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 6.8e-113 411.8 458 53.7
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 8.9e-113 411.4 454 53.5
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 8.9e-113 411.4 456 52.9
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 2.6e-112 409.8 478 52.7
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 9.9e-112 407.9 454 56.2
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 9.9e-112 407.9 450 55.3
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 1.3e-111 407.5 459 54.7
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 2.9e-111 406.4 464 54.3
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 4.9e-111 405.6 479 52.6
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 8.4e-111 404.8 465 53.3
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 1.1e-110 404.4 437 54.7
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 1.9e-110 403.7 457 53.8
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 3.2e-110 402.9 466 53.6
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 4.2e-110 402.5 452 53.5
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 5.4e-110 402.1 458 54.4
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 1.2e-109 401.0 479 51.1
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 6.0e-109 398.7 448 54.7
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 2.3e-108 396.7 454 52.0
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 2.3e-108 396.7 452 54.0
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 3.9e-108 396.0 452 53.1
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 3.9e-108 396.0 455 53.4
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 5.1e-108 395.6 456 52.9
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 6.6e-108 395.2 456 52.6
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 6.6e-108 395.2 452 53.8
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 1.5e-107 394.0 456 54.6
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 7.3e-107 391.7 455 51.0
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 9.6e-107 391.3 451 53.2
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 1.3e-106 391.0 455 53.0
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 2.8e-106 389.8 460 51.5
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 3.6e-106 389.4 460 50.7
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 4.8e-106 389.0 453 53.9
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 8.1e-106 388.3 450 52.2
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 1.5e-104 384.0 460 48.5
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 2.2e-103 380.2 443 52.8
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 2.9e-103 379.8 453 51.7
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 2.9e-103 379.8 442 53.2
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 2.9e-103 379.8 452 52.2
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 8.4e-103 378.3 449 51.4
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 3.2e-102 376.3 444 51.6
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 5.4e-102 375.6 441 50.8
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 7.8e-101 371.7 488 47.5
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 1.0e-100 371.3 454 51.5
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 5.1e-100 369.0 456 50.2
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 2.5e-99 366.7 450 53.1
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 5.6e-99 365.5 458 50.2
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 7.3e-99 365.2 441 50.6
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 1.6e-98 364.0 455 51.0
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 8.1e-98 361.7 451 49.7
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 1.1e-97 361.3 455 49.9
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 1.4e-97 360.9 456 49.3
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 6.9e-97 358.6 441 49.4
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 1.2e-96 357.8 438 50.2
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 7.6e-96 355.1 449 49.0
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 2.2e-95 353.6 449 50.6
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 1.9e-94 350.5 443 48.8
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 4.2e-94 349.4 453 49.0
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 5.4e-94 349.0 462 48.9
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 9.3e-94 348.2 461 48.8
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 1.6e-93 347.4 448 48.0
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 1.6e-93 347.4 461 49.0
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 2.1e-93 347.1 442 49.1
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 3.5e-93 346.3 465 45.4
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 7.9e-93 345.1 440 48.0
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 7.9e-93 345.1 442 47.5
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.3e-92 344.4 461 48.6
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.1e-91 341.3 461 47.7
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 1.1e-91 341.3 435 47.8
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 1.1e-89 334.7 446 48.2
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 3.1e-89 333.2 442 46.8
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 2.0e-88 330.5 459 49.5
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 4.5e-88 329.3 451 47.5
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 1.3e-87 327.8 465 46.5
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 8.4e-87 325.1 441 46.7
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 5.1e-84 315.8 458 45.0
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 5.7e-83 312.4 446 44.2
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 2.4e-81 307.0 443 45.6
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 1.9e-78 297.4 373 50.9
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 3.2e-78 296.6 373 50.7
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 1.6e-77 294.3 436 45.2
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 3.0e-76 290.0 378 50.5
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 6.7e-76 288.9 443 44.0
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 3.3e-67 260.0 435 42.8
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 9.1e-65 251.9 434 41.5
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 2.6e-59 233.8 219 56.6
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.8e-58 230.3 564 34.9
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 1.7e-55 221.1 420 40.0
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 2.2e-55 220.7 156 68.6
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 7.4e-51 205.7 434 36.2
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 4.5e-48 196.4 502 34.5
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 1.0e-47 195.3 329 42.6
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 1.7e-47 194.5 580 31.2
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 2.2e-47 194.1 251 55.4
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 1.2e-43 181.8 336 40.8
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 1.1e-41 175.3 347 38.3
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 2.4e-41 174.1 154 59.7
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 4.1e-41 173.3 169 57.4
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 4.1e-41 173.3 169 57.4
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 9.1e-41 172.2 331 38.4
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 1.6e-40 171.4 550 31.8
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 4.5e-40 169.9 264 47.7
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 1.0e-39 168.7 331 38.1
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 2.9e-39 167.2 486 35.2
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 3.2e-38 163.7 416 34.1
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 1.4e-36 158.3 329 38.0
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 8.3e-34 149.1 329 38.3
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 8.3e-34 149.1 168 51.8
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 1.1e-33 148.7 162 60.5
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.2e-32 145.2 219 38.8
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 1.6e-32 144.8 273 41.4
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 1.6e-29 134.8 294 37.4
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 8.0e-29 132.5 294 36.1
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 1.8e-28 131.3 513 30.2
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 4.0e-28 130.2 219 37.0
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 2.2e-26 124.4 288 36.5
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 2.2e-26 124.4 684 25.9
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 6.4e-26 122.9 184 42.9
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 1.4e-25 121.7 288 36.1
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 2.0e-24 117.9 140 45.7
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 2.0e-24 117.9 140 45.7
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 5.9e-24 116.3 241 36.1
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 3.4e-19 100.5 119 51.3
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 2.9e-18 97.4 443 28.2
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.9e-18 97.4 111 59.5
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 7.0e-17 92.8 108 54.6
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 9.2e-17 92.4 111 44.1
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 1.2e-16 92.0 116 45.7
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 3.5e-16 90.5 108 45.4
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 7.8e-16 89.4 108 48.1
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 5.0e-15 86.7 108 54.6
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 2.3e-12 77.8 469 24.9
CAN.G1465.8 Capsicum annuum HOM05D000880 ORTHO05D004760 1.2e-11 75.5 60 61.7
CAN.G619.12 Capsicum annuum HOM05D000880 ORTHO05D004760 1.1e-09 68.9 124 38.7
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 2.1e-08 64.7 79 45.6


User provided reference genes

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