Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G0501 Papaver somniferum HOM05D001817 ORTHO05D001647 1.0e-72 276.6 135 100.0
PSO541G3291 Papaver somniferum HOM05D001817 ORTHO05D001647 1.0e-72 276.6 135 100.0
PSO675G0727 Papaver somniferum HOM05D001817 ORTHO05D001647 2.3e-56 222.2 133 80.5
Thecc.02G154600 Theobroma cacao HOM05D001817 ORTHO05D001647 1.8e-19 99.8 120 36.7
MBI07_g02003_MAGBIO Magnolia biondii HOM05D001817 ORTHO05D001647 1.6e-17 93.2 98 43.9
MBI18_g29804_MAGBIO Magnolia biondii HOM05D001817 ORTHO05D001647 4.8e-17 91.7 97 44.3
Thecc.02G154500 Theobroma cacao HOM05D001817 ORTHO05D001647 1.1e-16 90.5 130 36.9
Gohir.A13G061900 Gossypium hirsutum HOM05D001817 ORTHO05D001647 3.1e-16 89.0 119 35.3
Gorai.013G068000 Gossypium raimondii HOM05D001817 ORTHO05D001647 3.1e-16 89.0 128 34.4
PSO675G1869 Papaver somniferum HOM05D001817 ORTHO05D001647 3.1e-16 89.0 140 37.9
Gohir.D13G060100 Gossypium hirsutum HOM05D001817 ORTHO05D001647 5.3e-16 88.2 119 34.5
Sc23g0006630 Simmondsia chinensis HOM05D001817 ORTHO05D001647 2.0e-15 86.3 123 39.8
Duzib052G0237 Durio zibethinus HOM05D001817 ORTHO05D001647 2.6e-15 85.9 123 34.1
Phvul.006G043500 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 7.6e-15 84.3 95 41.1
Atru.chr7.2474 Acer truncatum HOM05D001817 ORTHO05D001647 9.9e-15 84.0 132 35.6
PSO675G1843 Papaver somniferum HOM05D001817 ORTHO05D001647 9.9e-15 84.0 110 40.0
Rhsim04G0091300 Rhododendron simsii HOM05D001817 ORTHO05D001647 9.9e-15 84.0 123 36.6
Glyma.10G271300 Glycine max HOM05D001817 ORTHO05D001647 1.3e-14 83.6 129 38.0
Os02g0511600 Oryza sativa ssp. japonica HOM05D001817 ORTHO05D001647 1.3e-14 83.6 98 39.8
Phvul.002G171300 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.3e-14 83.6 96 41.7
ECA246G0220 Erigeron canadensis HOM05D001817 ORTHO05D001647 2.2e-14 82.8 129 34.1
Prupe.1G484100 Prunus persica HOM05D001817 ORTHO05D001647 2.2e-14 82.8 129 36.4
QL07p000848 Quercus lobata HOM05D001817 ORTHO05D001647 2.9e-14 82.4 119 31.9
QL07p000880 Quercus lobata HOM05D001817 ORTHO05D001647 2.9e-14 82.4 119 31.9
Rhsim04G0092600 Rhododendron simsii HOM05D001817 ORTHO05D001647 2.9e-14 82.4 123 35.8
Sc03g0006280 Simmondsia chinensis HOM05D001817 ORTHO05D001647 2.9e-14 82.4 102 38.2
Glyma.17G218100 Glycine max HOM05D001817 ORTHO05D001647 4.9e-14 81.6 125 38.4
VMungo0464G1777 Vigna mungo HOM05D001817 ORTHO05D001647 4.9e-14 81.6 121 31.4
RcHm_v2.0_Chr6g0297461 Rosa chinensis HOM05D001817 ORTHO05D001647 8.4e-14 80.9 95 40.0
VMungo0720G3158 Vigna mungo HOM05D001817 ORTHO05D001647 8.4e-14 80.9 119 37.8
Atru.chr7.2473 Acer truncatum HOM05D001817 ORTHO05D001647 1.1e-13 80.5 121 34.7
CsaV3_6G045660 Cucumis sativus L. HOM05D001817 ORTHO05D001647 1.9e-13 79.7 120 38.3
PSO541G2996 Papaver somniferum HOM05D001817 ORTHO05D001647 1.9e-13 79.7 129 35.7
Lsat_1_v5_gn_6_115781 Lactuca sativa HOM05D001817 ORTHO05D001647 2.4e-13 79.3 121 31.4
Sed0012505 Sechium edule HOM05D001817 ORTHO05D001647 2.4e-13 79.3 116 32.8
HPP92_021690 Vanilla planifolia HOM05D001817 ORTHO05D001647 2.4e-13 79.3 97 39.2
Dinv24980 Davidia involucrata HOM05D001817 ORTHO05D001647 3.2e-13 79.0 127 35.4
Lj3g0023162 Lotus japonicus HOM05D001817 ORTHO05D001647 3.2e-13 79.0 132 34.1
FAN15G2483 Fragaria x ananassa HOM05D000140 ORTHO05D000087 4.2e-13 78.6 133 36.1
FAN24G1722 Fragaria x ananassa HOM05D000140 ORTHO05D000087 4.2e-13 78.6 133 36.1
MELO3C033004.2 Cucumis melo HOM05D001817 ORTHO05D001647 5.5e-13 78.2 120 36.7
TAR629G2934 Trochodendron aralioides HOM05D001817 ORTHO05D001647 5.5e-13 78.2 97 38.1
HPP92_021712 Vanilla planifolia HOM05D001817 ORTHO05D001647 5.5e-13 78.2 97 39.2
QL12p013638 Quercus lobata HOM05D001817 ORTHO05D001647 7.1e-13 77.8 119 31.1
FvH4_2g27480 Fragaria vesca HOM05D001817 ORTHO05D001647 1.2e-12 77.0 124 33.9
Lalb_Chr13g0294721 Lupinus albus HOM05D001817 ORTHO05D001647 1.2e-12 77.0 129 34.1
TAR371G0865 Trochodendron aralioides HOM05D001817 ORTHO05D001647 1.2e-12 77.0 96 35.4
Glyma.10G113700 Glycine max HOM05D001817 ORTHO05D001647 1.6e-12 76.6 116 34.5
Potri.006G257600 Populus trichocarpa HOM05D001817 ORTHO05D001647 1.6e-12 76.6 120 32.5
Haze_21486 Corylus avellana HOM05D001817 ORTHO05D001647 2.1e-12 76.3 104 30.8
Glyma.08G357100 Glycine max HOM05D001817 ORTHO05D001647 2.1e-12 76.3 119 37.8
CDE02G0050 Ceratophyllum demersum HOM05D001817 ORTHO05D001647 2.7e-12 75.9 123 35.8
FAN24G2789 Fragaria x ananassa HOM05D001817 ORTHO05D001647 2.7e-12 75.9 129 31.0
TAR629G0897 Trochodendron aralioides HOM05D001817 ORTHO05D001647 2.7e-12 75.9 97 37.1
FAN27G3307 Fragaria x ananassa HOM05D000140 ORTHO05D000087 3.5e-12 75.5 129 36.4
ATR0582G316 Amborella trichopoda HOM05D001817 ORTHO05D001647 4.6e-12 75.1 98 35.7
arahy.Tifrunner.gnm1.ann1.H9XFHY Arachis hypogaea HOM05D001817 ORTHO05D001647 4.6e-12 75.1 108 33.3
FAN20G0384 Fragaria x ananassa HOM05D000140 ORTHO05D000087 4.6e-12 75.1 129 36.4
VMungo0331G0739 Vigna mungo HOM05D001817 ORTHO05D001647 4.6e-12 75.1 123 34.1
Glyma.08G316300 Glycine max HOM05D001817 ORTHO05D001647 6.0e-12 74.7 97 38.1
FAN04G2963 Fragaria x ananassa HOM05D001817 ORTHO05D001647 7.9e-12 74.3 117 31.6
FAN08G2754 Fragaria x ananassa HOM05D001817 ORTHO05D001647 7.9e-12 74.3 117 31.6
FAN18G1420 Fragaria x ananassa HOM05D001817 ORTHO05D001647 7.9e-12 74.3 117 31.6
COL.COLO4_18892 Corchorus olitorius HOM05D001817 ORTHO05D001647 1.0e-11 73.9 120 31.7
FAN04G1340 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.0e-11 73.9 117 31.6
Glyma.07G189600 Glycine max HOM05D001817 ORTHO05D001647 1.0e-11 73.9 130 34.6
Lalb_Chr21g0316211 Lupinus albus HOM05D001817 ORTHO05D001647 1.0e-11 73.9 95 40.0
CDE06G0004 Ceratophyllum demersum HOM05D001817 ORTHO05D001647 1.3e-11 73.6 96 37.5
Sed0010450 Sechium edule HOM05D001817 ORTHO05D001647 1.3e-11 73.6 119 33.6
TAR622G1058 Trochodendron aralioides HOM05D001817 ORTHO05D001647 1.3e-11 73.6 130 29.2
VMungo0720G0118 Vigna mungo HOM05D001817 ORTHO05D001647 1.3e-11 73.6 99 33.3
Glyma.09G085400 Glycine max HOM05D001817 ORTHO05D001647 1.8e-11 73.2 119 35.3
FvH4_5g03660 Fragaria vesca HOM05D001817 ORTHO05D001647 2.3e-11 72.8 117 30.8
Sed0003642 Sechium edule HOM05D001817 ORTHO05D001647 2.3e-11 72.8 124 33.1
Zm00001eb421200 Zea mays HOM05D001817 ORTHO05D001647 2.3e-11 72.8 96 36.5
Lsat_1_v5_gn_6_115761 Lactuca sativa HOM05D001817 ORTHO05D001647 3.0e-11 72.4 95 31.6
Lalb_Chr13g0294691 Lupinus albus HOM05D001817 ORTHO05D001647 3.0e-11 72.4 130 35.4
Duzib150G1023 Durio zibethinus HOM05D001817 ORTHO05D001647 3.9e-11 72.0 125 34.4
FvH4_5g25410 Fragaria vesca HOM05D001817 ORTHO05D001647 5.1e-11 71.6 125 32.0
FAN18G2855 Fragaria x ananassa HOM05D001817 ORTHO05D001647 5.1e-11 71.6 125 32.0
QL02p021022 Quercus lobata HOM05D001817 ORTHO05D001647 5.1e-11 71.6 119 33.6
Lj4g0011737 Lotus japonicus HOM05D001817 ORTHO05D001647 6.7e-11 71.2 128 32.8
TAR622G0422 Trochodendron aralioides HOM05D001817 ORTHO05D001647 8.7e-11 70.9 95 33.7
Sed0003760 Sechium edule HOM05D001817 ORTHO05D001647 1.1e-10 70.5 124 33.1
Potri.004G167900 Populus trichocarpa HOM05D001817 ORTHO05D001647 1.5e-10 70.1 119 30.3
Lj7E726T0 Lonicera japonica HOM05D001817 ORTHO05D001647 1.9e-10 69.7 94 33.0
Lj4g0019656 Lotus japonicus HOM05D001817 ORTHO05D001647 1.9e-10 69.7 130 32.3
Lalb_Chr03g0036441 Lupinus albus HOM05D001817 ORTHO05D001647 1.9e-10 69.7 130 32.3
Sabra09G0098900 Salix brachista HOM05D001817 ORTHO05D001647 2.5e-10 69.3 119 31.1
Solyc10g054673.1 Solanum lycopersicum HOM05D001817 ORTHO05D001647 2.5e-10 69.3 120 29.2
Solyc10g054677.1 Solanum lycopersicum HOM05D001817 ORTHO05D001647 2.5e-10 69.3 120 29.2
Zm00001eb085230 Zea mays HOM05D001817 ORTHO05D001647 2.5e-10 69.3 95 36.8
Lj5g0009014 Lotus japonicus HOM05D001817 ORTHO05D001647 3.3e-10 68.9 128 33.6
Lalb_Chr12g0205721 Lupinus albus HOM05D001817 ORTHO05D001647 3.3e-10 68.9 129 32.6
TAR622G0534 Trochodendron aralioides HOM05D001817 ORTHO05D001647 3.3e-10 68.9 97 33.0
Glyma.05G150900 Glycine max HOM05D001817 ORTHO05D001647 4.3e-10 68.6 130 33.1
FvH4_2g28680 Fragaria vesca HOM05D001817 ORTHO05D001647 5.6e-10 68.2 126 31.7
HanXRQChr13g0400031 Helianthus annuus HOM05D001817 ORTHO05D001647 5.6e-10 68.2 131 29.8
Glyma.10G113900 Glycine max HOM05D001817 ORTHO05D001647 9.6e-10 67.4 87 28.7
Potri.009G129400 Populus trichocarpa HOM05D001817 ORTHO05D001647 9.6e-10 67.4 118 30.5
FAN24G1684 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.3e-09 67.0 94 31.9
Phvul.007G239600 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.3e-09 67.0 130 30.8
Lalb_Chr07g0186901 Lupinus albus HOM05D001817 ORTHO05D001647 1.6e-09 66.6 129 29.5
HPP92_015931 Vanilla planifolia HOM05D001817 ORTHO05D001647 1.6e-09 66.6 99 30.3
FAN27G0609 Fragaria x ananassa HOM05D001817 ORTHO05D001647 2.1e-09 66.2 94 31.9
Rhsim08G0041600 Rhododendron simsii HOM05D000350 ORTHO05D000228 2.1e-09 66.2 88 35.2
arahy.Tifrunner.gnm1.ann1.27HQCZ Arachis hypogaea HOM05D001817 ORTHO05D001647 3.7e-09 65.5 134 31.3
arahy.Tifrunner.gnm1.ann1.36N5BX Arachis hypogaea HOM05D001817 ORTHO05D001647 3.7e-09 65.5 134 31.3
arahy.Tifrunner.gnm1.ann1.G1WXPY Arachis hypogaea HOM05D001817 ORTHO05D001647 3.7e-09 65.5 109 33.0
Sc06g0000520 Simmondsia chinensis HOM05D001817 ORTHO05D001647 3.7e-09 65.5 127 31.5
arahy.Tifrunner.gnm1.ann1.62PV47 Arachis hypogaea HOM05D001817 ORTHO05D001647 4.8e-09 65.1 117 32.5
TPR.G35694 Trifolium pratense HOM05D001817 ORTHO05D001647 4.8e-09 65.1 124 31.5
arahy.Tifrunner.gnm1.ann1.QWA25E Arachis hypogaea HOM05D001817 ORTHO05D001647 6.2e-09 64.7 134 28.4
MELO3C003721.2 Cucumis melo HOM05D001817 ORTHO05D001647 6.2e-09 64.7 124 29.0
Phvul.001G045800 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 8.2e-09 64.3 121 28.9
TPR.G9069 Trifolium pratense HOM05D001817 ORTHO05D001647 8.2e-09 64.3 96 30.2
VMungo0720G1259 Vigna mungo HOM05D001817 ORTHO05D001647 8.2e-09 64.3 97 30.9
Eucgr.C01626 Eucalyptus grandis HOM05D001817 ORTHO05D001647 1.1e-08 63.9 101 34.7
BolC1t00681H Brassica oleracea HOM05D001817 ORTHO05D001647 1.4e-08 63.5 104 32.7
Carub.0007s0847 Capsella rubella HOM05D001817 ORTHO05D001647 1.4e-08 63.5 120 34.2
FAN27G2147 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.4e-08 63.5 108 30.6
Lalb_Chr12g0205711 Lupinus albus HOM05D001817 ORTHO05D001647 1.4e-08 63.5 80 38.8
arahy.Tifrunner.gnm1.ann1.8VW32B Arachis hypogaea HOM05D001817 ORTHO05D001647 2.4e-08 62.8 120 31.7
C01p06840 Brassica napus HOM05D001817 ORTHO05D001647 2.4e-08 62.8 104 32.7
BraA01t00587Z Brassica rapa HOM05D001817 ORTHO05D001647 3.1e-08 62.4 119 28.6
CsaV3_3G046170 Cucumis sativus L. HOM05D001817 ORTHO05D001647 3.1e-08 62.4 124 29.0
Ca_03322_v3 Cicer arietinum L. HOM05D001817 ORTHO05D001647 4.0e-08 62.0 113 31.9
Thhalv10026845m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 4.0e-08 62.0 120 33.3
Lj4g0020170 Lotus japonicus HOM05D001817 ORTHO05D001647 4.0e-08 62.0 94 30.9
Lalb_Chr07g0186891 Lupinus albus HOM05D001817 ORTHO05D001647 4.0e-08 62.0 123 30.9
TPR.G8 Trifolium pratense HOM05D001817 ORTHO05D001647 4.0e-08 62.0 83 33.7
arahy.Tifrunner.gnm1.ann1.2D36J9 Arachis hypogaea HOM05D001817 ORTHO05D001647 5.3e-08 61.6 96 32.3
arahy.Tifrunner.gnm1.ann1.P3P3AQ Arachis hypogaea HOM05D001817 ORTHO05D001647 5.3e-08 61.6 111 30.6
BcaC09g51999 Brassica carinata HOM05D000316 ORTHO05D001978 5.3e-08 61.6 101 30.7
A01p06190 Brassica napus HOM05D001817 ORTHO05D001647 5.3e-08 61.6 101 30.7
C01p06830 Brassica napus HOM05D001817 ORTHO05D001647 5.3e-08 61.6 101 30.7
Gohir.A07G029700 Gossypium hirsutum HOM05D001817 ORTHO05D001647 5.3e-08 61.6 129 27.1
RcHm_v2.0_Chr6g0297491 Rosa chinensis HOM05D001817 ORTHO05D001647 6.9e-08 61.2 76 38.2
A01p06200 Brassica napus HOM05D001817 ORTHO05D001647 9.0e-08 60.8 104 32.7
RcHm_v2.0_Chr6g0297451 Rosa chinensis HOM05D001817 ORTHO05D001647 9.0e-08 60.8 87 33.3
Sopen10g024540 Solanum pennellii HOM05D001817 ORTHO05D001647 9.0e-08 60.8 127 27.6
arahy.Tifrunner.gnm1.ann1.8W5KIC Arachis hypogaea HOM05D001817 ORTHO05D001647 2.0e-07 59.7 107 30.8
Thhalv10001150m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 2.0e-07 59.7 93 32.3
A01p06730 Brassica napus HOM05D001817 ORTHO05D001647 2.6e-07 59.3 106 32.1
CAN.G111.7 Capsicum annuum HOM05D001817 ORTHO05D001647 2.6e-07 59.3 89 29.2
ATR0582G117 Amborella trichopoda HOM05D001817 ORTHO05D001647 3.4e-07 58.9 96 33.3
PGSC0003DMG400004421 Solanum tuberosum HOM05D001817 ORTHO05D001647 3.4e-07 58.9 120 26.7
Ciclev10010457m.g Citrus clementina HOM05D001817 ORTHO05D001647 4.5e-07 58.5 108 35.2
Phvul.009G216700 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 5.8e-07 58.2 119 36.1
Psat6g048880 Pisum sativum HOM05D001817 ORTHO05D001647 5.8e-07 58.2 116 29.3
arahy.Tifrunner.gnm1.ann1.E0VXY6 Arachis hypogaea HOM05D001817 ORTHO05D001647 7.6e-07 57.8 95 33.7
C01p07490 Brassica napus HOM05D001817 ORTHO05D001647 7.6e-07 57.8 106 31.1
Lsat_1_v5_gn_6_27980 Lactuca sativa HOM05D001817 ORTHO05D001647 7.6e-07 57.8 133 27.1
Sopen10g024580 Solanum pennellii HOM05D001817 ORTHO05D001647 1.0e-06 57.4 81 30.9
BcaC09g51932 Brassica carinata HOM05D001817 ORTHO05D001647 1.3e-06 57.0 83 33.7
Os11g0222800 Oryza sativa ssp. japonica HOM05D001817 ORTHO05D001647 1.3e-06 57.0 88 35.2
SGA_v2.0_scaffold71G23794 Striga asiatica HOM05D001817 ORTHO05D001647 1.3e-06 57.0 94 31.9
BcaNung03138 Brassica carinata HOM05D001817 ORTHO05D001647 1.7e-06 56.6 104 30.8
QL07p000821 Quercus lobata HOM05D001817 ORTHO05D001647 1.7e-06 56.6 116 25.0
Thhalv10001075m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 2.2e-06 56.2 81 32.1
Os11g0224200 Oryza sativa ssp. japonica HOM05D001817 ORTHO05D001647 2.2e-06 56.2 88 34.1
Lsat_1_v5_gn_6_28121 Lactuca sativa HOM05D001817 ORTHO05D001647 2.9e-06 55.8 133 26.3
Psat0s3990g0120 Pisum sativum HOM05D001817 ORTHO05D001647 2.9e-06 55.8 124 28.2
Os11g0224301 Oryza sativa ssp. japonica HOM05D001817 ORTHO05D001647 3.8e-06 55.5 89 36.0
Glyma.20G204300 Glycine max HOM05D001817 ORTHO05D001647 4.9e-06 55.1 125 28.8
PSO478G4527 Papaver somniferum HOM05D001817 ORTHO05D001647 6.5e-06 54.7 83 34.9
Lj6g0014356 Lotus japonicus HOM05D001817 ORTHO05D001647 8.4e-06 54.3 95 31.6


User provided reference genes

Program Settings