Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G2949 Papaver somniferum HOM05D005833 ORTHO05D008135 0.0e+00 1722.6 875 100.0
PSO675G2737 Papaver somniferum HOM05D005833 ORTHO05D008135 0.0e+00 1556.2 875 91.8
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 5.5e-239 831.6 880 52.5
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 5.5e-231 805.1 870 52.0
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 9.1e-218 761.1 867 49.3
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 1.2e-217 760.8 867 49.4
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 2.6e-217 759.6 859 47.8
MBI15_g24990_MAGBIO Magnolia biondii HOM05D005833 ORTHO05D008135 1.8e-213 746.9 949 46.7
Dinv31936 Davidia involucrata HOM05D005833 ORTHO05D008135 3.0e-213 746.1 867 50.9
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 1.8e-210 736.9 854 47.8
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 2.4e-210 736.5 866 47.6
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 1.7e-208 730.3 866 46.4
Prupe.2G013700 Prunus persica HOM05D005833 ORTHO05D008135 2.0e-204 716.8 805 49.8
vmacro21814 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 3.7e-203 712.6 820 49.1
Gohir.A01G106200 Gossypium hirsutum HOM05D005833 ORTHO05D008135 7.0e-202 708.4 863 45.0
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 3.2e-199 699.5 835 49.6
Rhsim06G0007700 Rhododendron simsii HOM05D005833 ORTHO05D008135 7.2e-199 698.4 819 49.3
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 1.4e-197 694.1 867 48.2
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 1.5e-196 690.6 804 47.3
MD08G1002500 Malus domestica HOM05D005833 ORTHO05D008135 4.4e-196 689.1 829 47.3
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 1.7e-195 687.2 816 46.0
Potri.001G047200 Populus trichocarpa HOM05D005833 ORTHO05D008135 5.4e-194 682.2 870 44.8
Gorai.002G118000 Gossypium raimondii HOM05D005833 ORTHO05D008135 1.9e-191 673.7 863 45.0
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 4.0e-189 666.0 860 44.7
RcHm_v2.0_Chr6g0270441 Rosa chinensis HOM05D005833 ORTHO05D008135 1.2e-188 664.5 868 44.7
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 4.4e-188 662.5 811 45.7
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 1.0e-184 651.4 807 46.5
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 4.2e-183 646.0 905 42.7
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 9.5e-183 644.8 864 44.2
ATR0691G240 Amborella trichopoda HOM05D005833 ORTHO05D008135 6.1e-182 642.1 880 44.3
Thhalv10018138m.g Eutrema salsugineum HOM05D005833 ORTHO05D008135 6.1e-182 642.1 869 43.4
Ciclev10004328m.g Citrus clementina HOM05D005833 ORTHO05D008135 1.0e-181 641.3 853 45.7
Sp5g31420 Schrenkiella parvula HOM05D005833 ORTHO05D008135 5.2e-181 639.0 806 44.7
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 6.8e-181 638.6 807 44.7
EL10Ac1g01971 Beta vulgaris HOM05D005833 ORTHO05D008135 1.3e-179 634.4 855 44.2
Lalb_Chr19g0131751 Lupinus albus HOM05D005833 ORTHO05D008135 1.7e-179 634.0 811 46.0
CANSAT56G4366 Cannabis sativa HOM05D005833 ORTHO05D008135 2.9e-179 633.3 865 44.0
FvH4_2g37510 Fragaria vesca HOM05D005833 ORTHO05D008135 2.9e-179 633.3 871 43.5
RcHm_v2.0_Chr6g0304231 Rosa chinensis HOM05D005833 ORTHO05D008135 2.9e-179 633.3 868 43.7
Ca_25244_v3 Cicer arietinum L. HOM05D005833 ORTHO05D008135 1.4e-178 630.9 805 44.1
CAN.G311.113 Capsicum annuum HOM05D005833 ORTHO05D008135 2.4e-178 630.2 813 44.0
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 7.0e-178 628.6 865 42.1
Psat6g000360 Pisum sativum HOM05D005833 ORTHO05D008135 2.0e-177 627.1 811 44.1
Sopen04g035940 Solanum pennellii HOM05D005833 ORTHO05D008135 4.6e-177 625.9 868 42.3
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 1.3e-176 624.4 868 42.4
THA.LOC104813754 Tarenaya hassleriana HOM05D005833 ORTHO05D008135 1.3e-176 624.4 819 44.0
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 8.6e-176 621.7 911 41.5
Medtr6g069480 Medicago truncatula HOM05D005833 ORTHO05D008135 1.1e-175 621.3 807 44.4
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 2.5e-175 620.2 813 43.2
C06p50250 Brassica napus HOM05D005833 ORTHO05D008135 3.3e-175 619.8 807 44.4
Hma1.2p1_1100F.1_g257060 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 5.6e-175 619.0 808 46.4
BolC6t40064H Brassica oleracea HOM05D005833 ORTHO05D008135 1.2e-174 617.8 807 44.1
CsaV3_7G024400 Cucumis sativus L. HOM05D005833 ORTHO05D008135 1.2e-174 617.8 870 42.8
BraA07t31715Z Brassica rapa HOM05D005833 ORTHO05D008135 2.8e-174 616.7 807 44.0
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 3.6e-174 616.3 809 45.1
VMungo0647G1167 Vigna mungo HOM05D005833 ORTHO05D008135 3.6e-174 616.3 859 43.0
A07p41850 Brassica napus HOM05D005833 ORTHO05D008135 4.7e-174 615.9 806 43.9
FAN27G2717 Fragaria x ananassa HOM05D005833 ORTHO05D008135 1.0e-173 614.8 868 42.3
arahy.Tifrunner.gnm1.ann1.5KXZ1H Arachis hypogaea HOM05D005833 ORTHO05D008135 2.3e-173 613.6 847 44.0
arahy.Tifrunner.gnm1.ann1.JP3Y8V Arachis hypogaea HOM05D005833 ORTHO05D008135 2.3e-173 613.6 847 44.0
Aqoxy6G01299 Aquilegia oxysepala HOM05D005833 ORTHO05D008135 9.8e-172 608.2 892 42.4
ECA238G3879 Erigeron canadensis HOM05D005833 ORTHO05D008135 1.3e-171 607.8 798 43.6
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 8.3e-171 605.1 806 43.3
HanXRQChr14g0428311 Helianthus annuus HOM05D005833 ORTHO05D008135 1.4e-170 604.4 812 42.6
Manes.01G079700 Manihot esculenta HOM05D005833 ORTHO05D008135 1.4e-170 604.4 868 43.3
Lj2g0014489 Lotus japonicus HOM05D005833 ORTHO05D008135 2.0e-169 600.5 825 43.0
ClCG09G010280 Citrullus lanatus HOM05D005833 ORTHO05D008135 4.6e-169 599.4 842 42.3
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 2.5e-167 593.6 823 42.4
FAN15G1206 Fragaria x ananassa HOM05D005833 ORTHO05D008135 7.3e-167 592.0 872 41.9
Lsat_1_v5_gn_2_5021 Lactuca sativa HOM05D005833 ORTHO05D008135 6.2e-166 589.0 852 42.3
Zm00001eb315840 Zea mays HOM05D005833 ORTHO05D008135 2.3e-165 587.0 806 41.2
Lj8C590T1 Lonicera japonica HOM05D005833 ORTHO05D008135 1.2e-164 584.7 770 46.6
Migut.N03019 Erythranthe guttata HOM05D005833 ORTHO05D008135 3.4e-164 583.2 817 44.3
SHI22388 Sapria himalayana HOM05D005833 ORTHO05D008135 1.6e-161 574.3 803 41.7
MSTRG.22056 Avicennia marina HOM05D005833 ORTHO05D008135 2.3e-160 570.5 812 44.3
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 6.6e-160 568.9 759 44.5
SGA_v2.0_scaffold225G43066 Striga asiatica HOM05D005833 ORTHO05D008135 2.1e-158 563.9 812 42.9
HPP92_008490 Vanilla planifolia HOM05D005833 ORTHO05D008135 8.4e-155 552.0 843 39.5
Cc01_g04490 Coffea canephora HOM05D005833 ORTHO05D008135 1.6e-153 547.7 863 40.7
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 3.3e-151 540.0 799 40.3
Hma1.2p1_1100F.1_g257040 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 1.8e-149 534.3 644 46.3
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 1.5e-143 514.6 817 38.6
Glyma.14G223300 Glycine max HOM05D005833 ORTHO05D008135 1.2e-140 505.0 812 40.5
BcaNung02801 Brassica carinata HOM05D005833 ORTHO05D008135 3.4e-140 503.4 797 39.8
CARHR069840 Cardamine hirsuta HOM05D005833 ORTHO05D008135 3.4e-140 503.4 648 44.8
FAN20G1756 Fragaria x ananassa HOM05D005833 ORTHO05D008135 2.8e-134 483.8 679 43.4
BcaC08g47270 Brassica carinata HOM05D005833 ORTHO05D008135 1.4e-133 481.5 678 42.6
Sed0015348 Sechium edule HOM05D005833 ORTHO05D008135 5.3e-133 479.6 696 42.1
Gohir.D01G092700 Gossypium hirsutum HOM05D005833 ORTHO05D008135 8.4e-131 472.2 630 42.4
PGR083G0966 Punica granatum HOM05D005833 ORTHO05D008135 2.1e-129 467.6 816 39.0
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 7.9e-129 465.7 639 43.0
Eucgr.F01756 Eucalyptus grandis HOM05D005833 ORTHO05D008135 1.8e-128 464.5 669 43.9
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 2.0e-124 451.1 626 42.3
unitig_699.g19597 Utricularia gibba HOM05D005833 ORTHO05D008135 7.9e-105 386.0 660 36.5
SalBow6G3625 Salvia bowleyana HOM05D005833 ORTHO05D008135 2.3e-104 384.4 581 40.8
AUR62036881 Chenopodium quinoa HOM05D005833 ORTHO05D008135 2.7e-97 360.9 594 38.0
TPR.G8628 Trifolium pratense HOM05D005833 ORTHO05D008135 1.2e-89 335.5 355 51.5
BcaC08g47127 Brassica carinata HOM05D005833 ORTHO05D008135 4.4e-87 327.0 469 41.4
BcaC09g51226 Brassica carinata HOM05D005833 ORTHO05D008135 4.8e-86 323.6 691 34.2
BcaC08g47126 Brassica carinata HOM05D005833 ORTHO05D008135 1.2e-60 239.2 245 50.6
CAN.G643.17 Capsicum annuum HOM05D005833 ORTHO05D008135 3.0e-51 208.0 387 35.1
COL.COLO4_04005 Corchorus olitorius HOM05D005833 ORTHO05D008135 1.2e-47 196.1 348 36.8
TPR.G8631 Trifolium pratense HOM05D005833 ORTHO05D008135 2.0e-47 195.3 374 35.8
SMO230G0024 Selaginella moellendorffii HOM05D005833 ORTHO05D008135 2.3e-40 171.8 739 24.9
Glyma.14G222150 Glycine max HOM05D005833 ORTHO05D008135 1.2e-39 169.5 199 47.7
Oeu011332.1 Olea europaea HOM05D005833 ORTHO05D008135 1.3e-38 166.0 146 61.6
Oeu011333.1 Olea europaea HOM05D005833 ORTHO05D008135 1.3e-38 166.0 146 61.6
Nitab4.5_0000198g0010 Nicotiana tabacum HOM05D005833 ORTHO05D008135 3.8e-38 164.5 169 52.7
Medtr1g026480 Medicago truncatula HOM05D005833 ORTHO05D008135 7.1e-37 160.2 151 55.6
CBR_g11913 Chara braunii HOM05D005833 ORTHO05D008135 2.1e-36 158.7 631 24.6
Mapoly0009s0070 Marchantia polymorpha HOM05D005833 ORTHO05D008135 3.9e-35 154.5 629 23.8
Pp3c11_2930 Physcomitrium patens HOM05D005833 ORTHO05D008135 1.1e-34 152.9 839 25.0
AagrBONN_evm.TU.Sc2ySwM_117.1478 Anthoceros agrestis HOM05D005833 ORTHO05D008135 5.6e-34 150.6 512 27.0
Lj8P589T22 Lonicera japonica HOM05D005833 ORTHO05D008135 4.2e-29 134.4 158 43.7
DCAR_009530 Daucus carota HOM05D005833 ORTHO05D008135 3.5e-28 131.3 119 58.0
BcaC08g47271 Brassica carinata HOM05D005833 ORTHO05D008135 4.0e-24 117.9 118 50.8
Medtr1g026340 Medicago truncatula HOM05D005833 ORTHO05D008135 4.6e-20 104.4 149 38.9
Medtr1g026460 Medicago truncatula HOM05D005833 ORTHO05D008135 4.6e-20 104.4 149 38.9
Lj5g0006874 Lotus japonicus HOM05D005833 ORTHO05D008135 6.4e-14 84.0 87 43.7
BcaC09g51225 Brassica carinata HOM05D005833 ORTHO05D008135 1.2e-12 79.7 79 53.2
TPR.G8633 Trifolium pratense HOM05D005833 ORTHO05D008135 3.0e-11 75.1 82 43.9
Prupe.1G327100 Prunus persica HOM05D000001 ORTHO05D000003 1.3e-09 69.7 380 21.1
BcaB05g24986 Brassica carinata HOM05D005833 ORTHO05D008135 1.2e-07 63.2 75 48.0
Aqoxy5G04247 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 2.6e-07 62.0 453 21.0
Migut.D01667 Erythranthe guttata HOM05D000001 ORTHO05D000003 4.5e-07 61.2 158 27.8
FAN12G1376 Fragaria x ananassa HOM05D000001 ORTHO05D000003 7.6e-07 60.5 393 20.9
MD13G1023400 Malus domestica HOM05D000001 ORTHO05D000003 1.0e-06 60.1 388 21.1
SGA_v2.0_scaffold553G52896 Striga asiatica HOM05D000001 ORTHO05D000003 2.2e-06 58.9 107 29.9
FAN07G1607 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.8e-06 58.2 392 21.2
Potri.013G103600 Populus trichocarpa HOM05D000001 ORTHO05D000003 3.8e-06 58.2 358 21.2
FvH4_4g32680 Fragaria vesca HOM05D000001 ORTHO05D000003 4.9e-06 57.8 393 20.9
CAN.G772.6 Capsicum annuum HOM05D005833 ORTHO05D008135 6.5e-06 57.4 79 43.0
FvH4_3g15940 Fragaria vesca HOM05D000001 ORTHO05D010372 6.5e-06 57.4 406 19.7
FAN11G0045 Fragaria x ananassa HOM05D000001 ORTHO05D010372 6.5e-06 57.4 406 19.7
Rhsim02G0027400 Rhododendron simsii HOM05D000001 ORTHO05D000003 8.4e-06 57.0 294 22.8
Thecc.05G206300 Theobroma cacao HOM05D000001 ORTHO05D000003 8.4e-06 57.0 445 19.3


User provided reference genes

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