Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 1.8e-179 632.5 325 100.0
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 1.8e-179 632.5 325 100.0
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 1.9e-160 569.3 315 90.8
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 3.0e-126 455.7 333 68.5
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 4.4e-125 451.8 322 69.3
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 1.3e-121 440.3 326 69.6
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 7.2e-120 434.5 328 66.5
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 7.2e-120 434.5 328 66.5
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 8.8e-118 427.6 328 63.1
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 8.3e-116 421.0 316 67.7
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 3.1e-115 419.1 313 68.1
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 5.4e-115 418.3 325 63.7
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 5.4e-115 418.3 329 62.6
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 7.0e-115 417.9 332 63.6
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 2.7e-114 416.0 331 64.7
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 4.5e-114 415.2 329 61.7
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 4.5e-114 415.2 329 62.6
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 5.9e-114 414.8 329 62.0
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 6.5e-113 411.4 329 62.3
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 1.1e-112 410.6 329 62.6
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 1.5e-112 410.2 329 63.2
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 1.9e-112 409.8 329 63.5
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 1.9e-112 409.8 331 62.8
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 3.2e-112 409.1 326 62.0
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 4.2e-112 408.7 318 62.9
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 1.6e-111 406.8 333 59.8
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 4.7e-111 405.2 321 62.0
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 6.1e-111 404.8 330 60.9
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 8.0e-111 404.4 327 62.4
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 2.3e-110 402.9 331 62.8
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 2.3e-110 402.9 328 60.1
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 4.0e-110 402.1 333 59.8
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 6.8e-110 401.4 330 61.8
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 6.8e-110 401.4 331 62.2
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 8.8e-110 401.0 330 60.3
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 8.8e-110 401.0 322 64.3
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 8.8e-110 401.0 326 62.3
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 8.8e-110 401.0 334 62.0
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 1.2e-109 400.6 336 59.5
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 1.5e-109 400.2 334 61.4
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 3.4e-109 399.1 331 61.6
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 5.7e-109 398.3 329 62.0
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 2.8e-108 396.0 335 61.2
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 2.8e-108 396.0 323 62.2
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 4.9e-108 395.2 330 63.6
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 6.3e-108 394.8 337 59.9
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 1.1e-107 394.0 335 59.7
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 1.4e-107 393.7 333 59.5
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 3.1e-107 392.5 336 59.2
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 3.1e-107 392.5 333 58.9
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 4.1e-107 392.1 333 58.9
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 9.2e-107 391.0 326 60.4
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 1.2e-106 390.6 330 60.9
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 1.2e-106 390.6 332 60.5
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 1.2e-106 390.6 333 58.6
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.6e-106 390.2 328 60.7
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 2.7e-106 389.4 328 59.8
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 3.5e-106 389.0 335 59.7
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 4.5e-106 388.7 333 58.0
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 5.9e-106 388.3 333 58.0
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 7.7e-106 387.9 316 61.1
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 7.7e-106 387.9 327 57.5
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 1.7e-105 386.7 329 59.6
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.7e-105 386.7 328 60.1
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 1.7e-105 386.7 337 59.3
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 2.9e-105 386.0 316 61.4
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 2.9e-105 386.0 328 58.2
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 2.9e-105 386.0 333 57.7
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 3.8e-105 385.6 328 60.4
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 6.6e-105 384.8 337 58.5
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 8.6e-105 384.4 337 58.5
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 8.6e-105 384.4 326 57.7
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 8.6e-105 384.4 328 60.1
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 1.1e-104 384.0 337 59.1
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 1.5e-104 383.6 337 58.2
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 1.9e-104 383.3 337 57.9
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 2.5e-104 382.9 337 58.2
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 2.5e-104 382.9 328 59.8
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 2.5e-104 382.9 328 60.1
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 3.3e-104 382.5 337 57.9
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 3.3e-104 382.5 337 57.9
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 3.3e-104 382.5 326 57.7
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 5.6e-104 381.7 337 57.9
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 7.3e-104 381.3 332 58.7
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 7.3e-104 381.3 326 56.7
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 2.1e-103 379.8 332 58.4
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 2.1e-103 379.8 330 57.0
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 1.4e-102 377.1 332 57.8
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 1.4e-102 377.1 329 57.1
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 3.0e-102 375.9 337 57.3
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 3.0e-102 375.9 329 57.4
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 8.9e-102 374.4 337 57.0
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 4.4e-101 372.1 335 57.6
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 7.5e-101 371.3 337 56.4
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 2.2e-100 369.8 366 53.8
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 6.4e-100 368.2 323 57.9
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 2.4e-99 366.3 331 57.1
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 5.4e-99 365.2 338 53.6
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 3.0e-97 359.4 260 66.9
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 5.0e-97 358.6 324 55.9
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 5.0e-97 358.6 328 55.2
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 8.6e-97 357.8 329 56.2
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 1.5e-96 357.1 320 56.6
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 2.5e-96 356.3 321 54.5
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 4.3e-96 355.5 314 55.7
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 2.2e-92 343.2 337 54.0
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 8.3e-92 341.3 327 52.0
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 4.6e-90 335.5 320 57.2
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 1.1e-88 330.9 328 49.1
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 2.8e-87 326.2 288 55.9
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 1.6e-82 310.5 356 47.2
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 7.8e-82 308.1 255 61.6
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 3.0e-73 279.6 332 44.0
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 4.3e-72 275.8 336 42.0
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 5.3e-62 242.3 220 57.3
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 8.7e-57 224.9 314 40.1
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 2.6e-53 213.4 178 62.4
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 8.4e-52 208.4 182 57.1
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 1.4e-51 207.6 182 57.1
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 1.9e-51 207.2 255 43.9
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 1.3e-47 194.5 325 35.1
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 1.8e-46 190.7 158 61.4
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 1.2e-45 188.0 142 64.1
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 9.6e-40 168.3 139 62.6
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 2.8e-39 166.8 146 58.2
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 7.2e-35 152.1 193 44.0
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 1.3e-33 147.9 277 32.5
MCO15G572 Micromonas commoda HOM05D004841 ORTHO05D005874 5.1e-33 146.0 344 29.4
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 8.7e-33 145.2 101 72.3
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 3.3e-32 143.3 171 44.4
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 5.7e-32 142.5 160 43.1
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 1.3e-31 141.4 116 62.9
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 1.6e-31 141.0 105 67.6
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 2.8e-31 140.2 116 63.8
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 6.3e-31 139.0 102 67.6
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 8.2e-31 138.7 109 64.2
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 3.8e-28 129.8 120 52.5
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 1.4e-27 127.9 114 57.0
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 4.2e-27 126.3 95 61.1
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 1.2e-26 124.8 114 56.1
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 3.3e-24 116.7 296 32.1
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 2.8e-23 113.6 88 64.8
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 2.8e-23 113.6 88 64.8
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 1.1e-22 111.7 173 37.6
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 5.5e-19 99.4 132 40.2
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 6.1e-18 95.9 138 42.0
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 1.8e-17 94.4 123 41.5
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 1.4e-14 84.7 106 39.6
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 7.2e-11 72.4 43 76.7
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 9.4e-11 72.0 129 40.3
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 2.3e-09 67.4 46 65.2
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 5.7e-08 62.8 97 30.9
BcaC03g14843 Brassica carinata HOM05D004841 ORTHO05D005874 2.4e-06 57.4 49 57.1


User provided reference genes

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