Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G1602 Papaver somniferum HOM05D004653 ORTHO05D006221 0.0e+00 1129.8 548 100.0
PSO675G8871 Papaver somniferum HOM05D004653 ORTHO05D006221 0.0e+00 1098.6 548 98.0
TAR376G1013 Trochodendron aralioides HOM05D004653 ORTHO05D006221 7.6e-247 857.1 553 73.8
Nn1g05497 Nelumbo nucifera HOM05D004653 ORTHO05D006221 4.2e-245 851.3 535 75.9
GSVIVG01009125001 Vitis vinifera HOM05D004653 ORTHO05D006221 5.6e-242 840.9 500 77.6
Atru.chr13.1058 Acer truncatum HOM05D004653 ORTHO05D006221 8.1e-241 837.0 521 76.2
MBI06_g18790_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 1.8e-240 835.9 563 72.5
TWI56G0982 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 1.3e-238 829.7 551 72.4
COL.COLO4_11961 Corchorus olitorius HOM05D004653 ORTHO05D006221 6.4e-238 827.4 518 76.1
Aqoxy6G01474 Aquilegia oxysepala HOM05D004653 ORTHO05D006221 5.5e-237 824.3 566 72.8
CSS0037453 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 9.3e-237 823.5 550 72.2
Thecc.08G066400 Theobroma cacao HOM05D004653 ORTHO05D006221 1.3e-233 813.1 466 80.9
QL09p016947 Quercus lobata HOM05D004653 ORTHO05D006221 2.1e-233 812.4 511 75.0
Actinidia30803 Actinidia chinensis HOM05D004653 ORTHO05D006221 3.7e-233 811.6 546 71.8
Ciclev10000790m.g Citrus clementina HOM05D004653 ORTHO05D006221 8.2e-233 810.4 546 71.8
MD15G1380600 Malus domestica HOM05D004653 ORTHO05D006221 1.2e-231 806.6 550 71.5
Lj1g0013887 Lotus japonicus HOM05D004653 ORTHO05D006221 3.4e-231 805.1 538 72.1
Manes.18G062000 Manihot esculenta HOM05D004653 ORTHO05D006221 3.4e-231 805.1 545 72.1
Cfa013708 Carpinus fangiana HOM05D004653 ORTHO05D006221 4.5e-231 804.7 479 78.5
Potri.002G102600 Populus trichocarpa HOM05D004653 ORTHO05D006221 1.0e-230 803.5 465 79.6
Gorai.009G279800 Gossypium raimondii HOM05D004653 ORTHO05D006221 1.7e-230 802.7 551 71.0
Hma1.2p1_0961F.1_g241730 Hydrangea macrophylla HOM05D004653 ORTHO05D006221 2.2e-230 802.4 478 77.8
Migut.I00061 Erythranthe guttata HOM05D004653 ORTHO05D006221 6.5e-230 800.8 550 71.3
Prupe.1G526800 Prunus persica HOM05D004653 ORTHO05D006221 1.4e-229 799.7 461 80.3
THA.LOC104799811 Tarenaya hassleriana HOM05D004653 ORTHO05D006221 1.9e-229 799.3 544 71.1
MD08G1191800 Malus domestica HOM05D004653 ORTHO05D006221 2.5e-229 798.9 535 71.4
FAN04G0673 Fragaria x ananassa HOM05D004653 ORTHO05D006221 3.2e-229 798.5 537 72.3
FAN08G1395 Fragaria x ananassa HOM05D004653 ORTHO05D006221 5.5e-229 797.7 538 72.1
CiPaw.07G169200 Carya illinoinensis HOM05D004653 ORTHO05D006221 1.6e-228 796.2 465 79.1
Ciclev10001057m.g Citrus clementina HOM05D004653 ORTHO05D006221 2.1e-228 795.8 468 78.8
FvH4_5g35940 Fragaria vesca HOM05D004653 ORTHO05D006221 2.7e-228 795.4 538 72.1
FAN18G1441 Fragaria x ananassa HOM05D004653 ORTHO05D006221 4.6e-228 794.7 538 72.1
ClCG11G014410 Citrullus lanatus HOM05D004653 ORTHO05D006221 6.1e-228 794.3 518 73.6
Gohir.D05G267700 Gossypium hirsutum HOM05D004653 ORTHO05D006221 6.1e-228 794.3 551 70.2
TAR628G1442 Trochodendron aralioides HOM05D004653 ORTHO05D006221 6.1e-228 794.3 474 77.8
Manes.02G147500 Manihot esculenta HOM05D004653 ORTHO05D006221 1.0e-227 793.5 468 78.6
RcHm_v2.0_Chr7g0237681 Rosa chinensis HOM05D004653 ORTHO05D006221 1.0e-227 793.5 471 77.7
arahy.Tifrunner.gnm1.ann1.QAT0QL Arachis hypogaea HOM05D004653 ORTHO05D006221 1.3e-227 793.1 466 79.6
Phvul.009G037700 Phaseolus vulgaris HOM05D004653 ORTHO05D006221 3.9e-227 791.6 544 70.0
AT5G49970 Arabidopsis thaliana HOM05D004653 ORTHO05D006221 8.7e-227 790.4 519 72.4
VMungo1309G1466 Vigna mungo HOM05D004653 ORTHO05D006221 1.1e-226 790.0 463 78.8
Sp6g11760 Schrenkiella parvula HOM05D004653 ORTHO05D006221 3.3e-226 788.5 469 77.8
Lj4C92G16 Lonicera japonica HOM05D004653 ORTHO05D006221 7.4e-226 787.3 473 76.5
PGR031G0949 Punica granatum HOM05D004653 ORTHO05D006221 1.6e-225 786.2 547 71.3
MELO3C003541.2 Cucumis melo HOM05D004653 ORTHO05D006221 3.7e-225 785.0 470 77.2
CDE05G0914 Ceratophyllum demersum HOM05D004653 ORTHO05D006221 4.8e-225 784.6 474 77.2
Cpa.g.sc36.204 Carica papaya HOM05D004653 ORTHO05D006221 8.2e-225 783.9 460 79.1
CANSAT11G2183 Cannabis sativa HOM05D004653 ORTHO05D006221 1.1e-224 783.5 546 70.1
TWI36G0595 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 1.1e-224 783.5 466 77.5
Medtr3g100890 Medicago truncatula HOM05D004653 ORTHO05D006221 1.4e-224 783.1 475 76.6
Sed0021217 Sechium edule HOM05D004653 ORTHO05D006221 1.8e-224 782.7 543 70.3
CsaV3_3G047810 Cucumis sativus L. HOM05D004653 ORTHO05D006221 2.4e-224 782.3 465 77.8
Solyc03g113780.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 3.1e-224 781.9 543 68.1
PGSC0003DMG401024581 Solanum tuberosum HOM05D004653 ORTHO05D006221 5.3e-224 781.2 539 68.3
Haze_22352 Corylus avellana HOM05D004653 ORTHO05D006221 9.0e-224 780.4 567 67.0
TPR.G26053 Trifolium pratense HOM05D004653 ORTHO05D006221 1.2e-223 780.0 462 78.1
AL8G23940 Arabidopsis lyrata HOM05D004653 ORTHO05D006221 1.5e-223 779.6 473 76.3
Carub.0008s0987 Capsella rubella HOM05D004653 ORTHO05D006221 1.5e-223 779.6 518 71.0
MSTRG.23086 Avicennia marina HOM05D004653 ORTHO05D006221 3.4e-223 778.5 547 69.1
Thhalv10013217m.g Eutrema salsugineum HOM05D004653 ORTHO05D006221 4.5e-223 778.1 465 77.2
Psat5g045400 Pisum sativum HOM05D004653 ORTHO05D006221 5.9e-223 777.7 461 77.7
Sabra02G0080400 Salix brachista HOM05D004653 ORTHO05D006221 5.9e-223 777.7 543 68.5
Lalb_Chr23g0270281 Lupinus albus HOM05D004653 ORTHO05D006221 7.7e-223 777.3 461 77.7
Sopen03g032830 Solanum pennellii HOM05D004653 ORTHO05D006221 2.2e-222 775.8 539 67.9
BcaC01g04840 Brassica carinata HOM05D004653 ORTHO05D006221 2.5e-221 772.3 469 77.8
CSS0025013 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 2.5e-221 772.3 471 75.4
CARHR258740 Cardamine hirsuta HOM05D004653 ORTHO05D006221 4.2e-221 771.5 474 75.5
SalBow5G1317 Salvia bowleyana HOM05D004653 ORTHO05D006221 4.2e-221 771.5 551 68.4
A03p27590 Brassica napus HOM05D004653 ORTHO05D006221 9.4e-221 770.4 469 77.4
CAN.G853.18 Capsicum annuum HOM05D004653 ORTHO05D006221 1.2e-220 770.0 462 75.5
Eucgr.F02123 Eucalyptus grandis HOM05D004653 ORTHO05D006221 1.2e-220 770.0 463 77.3
Ca_15984_v3 Cicer arietinum L. HOM05D004653 ORTHO05D006221 1.6e-220 769.6 461 76.8
SGA_v2.0_scaffold25G10868 Striga asiatica HOM05D004653 ORTHO05D006221 2.7e-220 768.8 496 72.0
Aa31sc34G110 Aethionema arabicum HOM05D004653 ORTHO05D006221 3.6e-220 768.5 487 73.5
BolC3t15652H Brassica oleracea HOM05D004653 ORTHO05D006221 1.0e-219 766.9 469 77.2
BraA03t11972Z Brassica rapa HOM05D004653 ORTHO05D006221 1.0e-219 766.9 469 77.0
C03p33300 Brassica napus HOM05D004653 ORTHO05D006221 1.8e-219 766.1 469 77.2
HanXRQChr02g0047071 Helianthus annuus HOM05D004653 ORTHO05D006221 3.9e-219 765.0 549 67.6
Lalb_Chr11g0065151 Lupinus albus HOM05D004653 ORTHO05D006221 5.1e-219 764.6 460 77.0
AUR62027845 Chenopodium quinoa HOM05D004653 ORTHO05D006221 1.1e-218 763.5 546 69.2
BcaB01g02929 Brassica carinata HOM05D004653 ORTHO05D006221 3.3e-218 761.9 469 76.8
ATR0022G001 Amborella trichopoda HOM05D004653 ORTHO05D006221 7.4e-218 760.8 525 69.3
AUR62019003 Chenopodium quinoa HOM05D004653 ORTHO05D006221 6.3e-217 757.7 546 68.7
FAN13G0646 Fragaria x ananassa HOM05D004653 ORTHO05D006221 1.1e-216 756.9 520 70.4
Os10g0377800 Oryza sativa ssp. japonica HOM05D004653 ORTHO05D006221 4.1e-216 755.0 461 75.9
arahy.Tifrunner.gnm1.ann1.Y1WP0G Arachis hypogaea HOM05D004653 ORTHO05D006221 2.0e-215 752.7 466 76.4
Hund26999 Selenicereus undatus HOM05D004653 ORTHO05D006221 2.0e-215 752.7 564 67.6
DCAR_012873 Daucus carota HOM05D004653 ORTHO05D006221 5.0e-214 748.0 517 67.7
Rhsim06G0074900 Rhododendron simsii HOM05D004653 ORTHO05D006221 7.9e-212 740.7 491 71.9
vmacro22331 Vaccinium macrocarpon HOM05D004653 ORTHO05D006221 2.3e-211 739.2 653 57.7
EL10Ac1g01097 Beta vulgaris HOM05D004653 ORTHO05D006221 3.0e-211 738.8 444 77.0
ECA247G2604 Erigeron canadensis HOM05D004653 ORTHO05D006221 7.4e-210 734.2 461 73.3
Lsat_1_v5_gn_1_2401 Lactuca sativa HOM05D004653 ORTHO05D006221 7.4e-210 734.2 515 67.2
Gohir.A05G265600 Gossypium hirsutum HOM05D004653 ORTHO05D006221 1.7e-209 733.0 551 66.4
Glyma.04G093600 Glycine max HOM05D004653 ORTHO05D006221 5.0e-206 721.5 542 66.8
Sc01g0000970 Simmondsia chinensis HOM05D004653 ORTHO05D006221 5.0e-206 721.5 421 78.4
MBI02_g18292_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 1.5e-205 719.9 472 71.6
Cc04_g13590 Coffea canephora HOM05D004653 ORTHO05D006221 1.2e-204 716.8 436 75.7
Sc01g0000980 Simmondsia chinensis HOM05D004653 ORTHO05D006221 2.7e-204 715.7 421 77.9
Nitab4.5_0000642g0300 Nicotiana tabacum HOM05D004653 ORTHO05D006221 2.0e-202 709.5 545 64.4
HPP92_004102 Vanilla planifolia HOM05D004653 ORTHO05D006221 2.0e-202 709.5 487 69.2
HPP92_004087 Vanilla planifolia HOM05D004653 ORTHO05D006221 3.3e-202 708.8 554 63.4
unitig_26.g9628 Utricularia gibba HOM05D004653 ORTHO05D006221 5.7e-202 708.0 458 70.7
Dinv44830 Davidia involucrata HOM05D004653 ORTHO05D006221 7.5e-194 681.0 471 70.7
Mapoly0107s0030 Marchantia polymorpha HOM05D004653 ORTHO05D006221 2.7e-191 672.5 465 66.9
Oeu042971.1 Olea europaea HOM05D004653 ORTHO05D006221 8.8e-187 657.5 442 69.0
Cc07_g19270 Coffea canephora HOM05D004653 ORTHO05D006221 4.4e-186 655.2 462 64.9
CAN.G853.20 Capsicum annuum HOM05D004653 ORTHO05D006221 5.5e-181 638.3 464 62.7
Oeu042973.1 Olea europaea HOM05D004653 ORTHO05D006221 8.0e-180 634.4 421 70.1
SMO356G0546 Selaginella moellendorffii HOM05D004653 ORTHO05D006221 5.7e-178 628.2 451 64.1
Pp3c2_19610 Physcomitrium patens HOM05D004653 ORTHO05D006221 1.7e-177 626.7 512 58.2
Sopen03g032820 Solanum pennellii HOM05D004653 ORTHO05D006221 1.8e-176 623.2 464 61.9
Solyc03g113770.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 8.6e-174 614.4 464 61.0
Oeu018527.2 Olea europaea HOM05D004653 ORTHO05D006221 1.2e-172 610.5 470 64.0
SGA_v2.0_scaffold467G52033 Striga asiatica HOM05D004653 ORTHO05D006221 8.9e-171 604.4 462 62.6
Migut.I00062 Erythranthe guttata HOM05D004653 ORTHO05D006221 3.4e-170 602.4 459 61.7
CSS0007986 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 1.9e-168 596.7 358 76.5
Nitab4.5_0007586g0050 Nicotiana tabacum HOM05D004653 ORTHO05D006221 4.6e-167 592.0 463 60.9
SalBow5G2478 Salvia bowleyana HOM05D004653 ORTHO05D006221 4.3e-165 585.5 454 60.6
Peaxi162Scf00017g00233 Petunia axillaris HOM05D004653 ORTHO05D006221 2.7e-159 566.2 446 63.0
AagrBONN_evm.TU.Sc2ySwM_368.1227 Anthoceros agrestis HOM05D004653 ORTHO05D006221 3.3e-157 559.3 472 57.0
Nitab4.5_0024258g0010 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.6e-143 513.8 403 64.0
MSTRG.23084 Avicennia marina HOM05D004653 ORTHO05D006221 8.7e-142 508.1 355 67.9
Cre08.g378200 Chlamydomonas reinhardtii HOM05D004653 ORTHO05D006221 5.1e-126 455.7 502 49.2
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 6.9e-123 445.3 316 68.0
Lalb_Chr23g0270171 Lupinus albus HOM05D004653 ORTHO05D006221 6.0e-119 432.2 254 77.2
PGSC0003DMG400024580 Solanum tuberosum HOM05D004653 ORTHO05D006221 3.9e-118 429.5 421 50.1
Zm00001eb027880 Zea mays HOM05D004653 ORTHO05D006221 2.8e-116 423.3 360 61.7
CSS0017284 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 5.7e-101 372.5 261 65.9
Actinidia10360 Actinidia chinensis HOM05D004653 ORTHO05D006221 1.1e-96 358.2 333 56.8
Glyma.06G095500 Glycine max HOM05D004653 ORTHO05D006221 5.9e-90 335.9 197 80.7
SEGI_17033 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 5.0e-89 332.8 214 69.2
CBR_g24311 Chara braunii HOM05D000019 ORTHO05D000353 6.5e-89 332.4 255 59.6
MCO02G367 Micromonas commoda HOM05D004653 ORTHO05D006221 2.0e-77 294.3 240 59.6
Duzib116G0761 Durio zibethinus HOM05D004653 ORTHO05D006221 1.0e-65 255.4 192 68.2
CBR_g24313 Chara braunii HOM05D004653 ORTHO05D006221 1.0e-54 218.8 176 60.8
Lalb_Chr23g0270161 Lupinus albus HOM05D004653 ORTHO05D006221 6.4e-52 209.5 144 68.8
Dinv42645 Davidia involucrata HOM05D004653 ORTHO05D006221 4.1e-43 180.3 156 59.6
Nitab4.5_0005655g0030 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.6e-42 178.3 113 67.3
Glyma.06G095451 Glycine max HOM05D004653 ORTHO05D006221 2.3e-41 174.5 178 53.4
Cc06_g21090 Coffea canephora HOM05D004653 ORTHO05D006221 2.8e-39 167.5 101 81.2
SEGI_12419 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 3.1e-38 164.1 117 66.7
Potri.005G159500 Populus trichocarpa HOM05D004653 ORTHO05D006221 1.4e-35 155.2 115 64.3
CSS0010132 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 7.3e-32 142.9 129 55.0
Dinv42644 Davidia involucrata HOM05D004653 ORTHO05D006221 2.4e-19 101.3 113 51.3
PRCOL_00006962 Prasinoderma coloniale HOM05D004653 ORTHO05D006221 1.3e-15 89.0 60 60.0
Gohir.A06G032660 Gossypium hirsutum HOM05D004653 ORTHO05D019566 2.0e-13 81.6 49 79.6
Gorai.010G036500 Gossypium raimondii HOM05D004653 ORTHO05D019566 2.0e-13 81.6 49 79.6
BcaB08g35370 Brassica carinata HOM05D004653 ORTHO05D006221 4.9e-12 77.0 57 64.9
Lalb_Chr23g0270181 Lupinus albus HOM05D004653 ORTHO05D019566 5.5e-11 73.6 58 67.2
ATR1171G001 Amborella trichopoda HOM05D004653 ORTHO05D019566 1.3e-09 68.9 114 44.7
MBI04_g21513_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D019566 3.9e-09 67.4 75 48.0
CSS0005277 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D019566 1.5e-08 65.5 60 56.7


User provided reference genes

Program Settings