Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 0.0e+00 1293.1 657 100.0
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 0.0e+00 1278.5 657 98.5
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 1.6e-267 926.0 660 71.8
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 2.2e-261 905.6 660 69.8
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 2.0e-249 865.9 672 66.1
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 2.8e-240 835.5 657 62.7
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 1.8e-239 832.8 660 65.8
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 2.9e-237 825.5 659 64.8
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 5.0e-237 824.7 660 64.1
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 5.2e-234 814.7 659 64.0
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 9.2e-231 803.9 651 64.2
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 4.3e-228 795.0 653 62.0
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 9.5e-228 793.9 660 61.4
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 3.6e-227 792.0 661 61.9
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 4.7e-227 791.6 662 61.8
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 1.8e-226 789.6 650 61.7
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 2.3e-226 789.3 656 60.2
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 5.2e-226 788.1 656 61.6
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 4.4e-225 785.0 660 61.2
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 9.8e-225 783.9 662 61.6
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 6.4e-224 781.2 660 61.8
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 8.3e-224 780.8 651 61.6
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 3.2e-223 778.9 657 62.1
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 7.8e-222 774.2 648 60.6
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 2.3e-221 772.7 652 60.3
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 1.2e-219 766.9 659 59.2
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 2.8e-219 765.8 662 60.4
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 3.6e-219 765.4 659 60.7
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 6.2e-219 764.6 662 60.9
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 1.0e-218 763.8 658 59.3
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 4.0e-218 761.9 658 59.6
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 6.8e-218 761.1 658 59.9
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 8.9e-218 760.8 657 58.8
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 2.0e-217 759.6 662 58.6
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 2.6e-217 759.2 660 58.5
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 7.5e-217 757.7 658 58.8
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 9.8e-217 757.3 650 60.0
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 9.8e-217 757.3 657 59.4
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 1.3e-216 756.9 658 59.7
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 1.3e-216 756.9 661 58.7
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 3.2e-215 752.3 653 59.4
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 3.2e-215 752.3 661 59.8
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 1.2e-214 750.4 658 57.3
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 1.6e-214 750.0 659 57.2
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 3.5e-214 748.8 659 58.7
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 7.8e-214 747.7 658 58.2
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 1.3e-213 746.9 663 57.6
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 1.3e-213 746.9 655 59.4
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 2.3e-213 746.1 659 58.4
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 5.0e-213 745.0 660 58.0
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 6.6e-213 744.6 657 58.0
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 2.5e-212 742.7 657 58.9
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.5e-212 742.7 658 58.1
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 6.2e-211 738.0 652 57.8
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 4.0e-210 735.3 667 57.4
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 5.8e-209 731.5 655 58.2
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 1.3e-208 730.3 653 58.3
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 3.7e-208 728.8 656 57.6
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 6.4e-208 728.0 646 59.8
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 4.1e-207 725.3 632 59.5
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 5.4e-207 724.9 659 56.4
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 6.0e-206 721.5 669 56.4
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 8.6e-205 717.6 658 56.5
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 8.6e-205 717.6 658 55.3
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 1.1e-204 717.2 664 55.6
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 4.3e-204 715.3 661 55.8
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 4.3e-204 715.3 656 55.9
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 4.3e-204 715.3 656 55.9
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 9.5e-204 714.1 665 57.1
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 1.2e-203 713.8 656 56.1
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 1.6e-203 713.4 682 54.3
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 2.1e-203 713.0 652 57.5
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 8.1e-203 711.1 660 56.8
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 1.4e-202 710.3 660 55.8
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 1.8e-202 709.9 654 57.8
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 2.3e-202 709.5 665 55.3
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 2.4e-199 699.5 657 55.9
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 7.1e-199 698.0 658 57.1
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 1.2e-198 697.2 654 54.6
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 1.3e-197 693.7 667 53.4
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 3.9e-197 692.2 660 54.7
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 1.5e-196 690.3 659 54.3
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 1.5e-196 690.3 659 54.3
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 7.3e-196 688.0 690 51.7
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 8.1e-195 684.5 654 54.4
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 2.4e-194 682.9 656 54.3
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 4.4e-193 678.7 654 53.7
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 4.4e-193 678.7 654 56.3
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 5.8e-193 678.3 654 54.6
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 5.1e-189 665.2 662 53.0
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 3.6e-187 659.1 666 52.7
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 2.4e-186 656.4 656 52.7
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 1.3e-184 650.6 667 52.3
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 4.9e-184 648.7 654 55.0
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 2.1e-182 643.3 659 52.2
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 5.1e-181 638.6 660 51.8
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 1.3e-176 624.0 510 62.9
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 4.9e-176 622.1 651 52.5
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 4.5e-161 572.4 490 59.4
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 2.5e-151 540.0 524 52.3
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 1.7e-131 474.2 424 57.5
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 1.3e-128 464.5 357 64.4
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 1.7e-128 464.2 485 50.3
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 1.6e-126 457.6 346 65.3
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 2.3e-125 453.8 625 44.2
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 7.0e-122 442.2 663 39.2
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 1.0e-112 411.8 649 37.8
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 1.4e-109 401.4 662 37.5
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 6.0e-97 359.4 509 40.9
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 5.8e-92 342.8 362 50.6
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 4.7e-78 296.6 290 53.4
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 7.6e-76 289.3 770 30.0
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 1.6e-70 271.6 272 51.1
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 2.0e-60 238.0 710 28.0
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 1.9e-58 231.5 355 38.3
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 4.3e-55 220.3 243 49.8
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 8.2e-54 216.1 271 44.6
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 1.0e-40 172.6 211 46.4
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 3.1e-29 134.4 127 55.9
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 1.5e-28 132.1 81 70.4
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 1.0e-27 129.4 235 34.9
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 4.2e-26 124.0 109 48.6
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 4.4e-23 114.0 86 51.2
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 5.7e-23 113.6 213 35.2
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 2.2e-22 111.7 220 31.4
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 3.5e-20 104.4 112 46.4
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 8.5e-19 99.8 261 28.7
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 4.7e-17 94.0 62 72.6
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 1.3e-14 85.9 95 45.3
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 2.8e-14 84.7 88 51.1
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.8e-13 82.0 78 52.6
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 2.4e-13 81.6 91 49.5
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 2.7e-12 78.2 66 62.1
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 1.2e-09 69.3 69 50.7
RcHm_v2.0_Chr6g0291761 Rosa chinensis HOM05D005402 ORTHO05D007036 1.2e-09 69.3 55 61.8


User provided reference genes

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