Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 0.0e+00 1170.6 600 100.0
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 0.0e+00 1094.0 603 94.5
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 2.7e-157 559.7 599 54.9
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 1.2e-149 534.3 589 52.5
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 5.6e-142 508.8 531 53.7
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 1.6e-141 507.3 480 56.9
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 4.1e-137 492.7 585 49.1
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 2.7e-136 490.0 547 49.4
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 4.6e-136 489.2 546 50.4
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 6.0e-136 488.8 548 49.8
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 1.0e-135 488.0 534 51.3
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 1.7e-135 487.3 542 51.7
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 3.0e-135 486.5 521 51.6
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 6.6e-135 485.3 553 49.4
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 6.6e-135 485.3 488 53.9
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 4.3e-134 482.6 583 48.7
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 1.6e-133 480.7 578 48.8
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 2.8e-133 479.9 526 52.5
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 3.6e-133 479.6 544 51.5
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 6.8e-132 475.3 493 52.3
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 4.9e-130 469.2 608 46.7
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 4.1e-129 466.1 536 49.6
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 1.6e-128 464.2 570 48.8
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 5.1e-127 459.1 552 49.6
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 1.5e-126 457.6 494 50.8
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 1.9e-126 457.2 499 51.5
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 1.9e-126 457.2 499 51.5
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 5.6e-126 455.7 527 49.7
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 4.7e-125 452.6 432 56.7
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 3.1e-124 449.9 568 47.5
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 1.2e-123 448.0 550 50.4
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 2.6e-123 446.8 568 47.5
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 5.8e-123 445.7 531 47.6
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 1.7e-122 444.1 522 48.3
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 3.7e-122 443.0 526 48.1
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 8.3e-122 441.8 516 48.4
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 1.6e-120 437.6 513 48.9
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 3.5e-120 436.4 603 44.6
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 3.9e-119 433.0 548 47.4
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 1.9e-118 430.6 471 50.5
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 2.5e-118 430.3 480 50.0
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 4.3e-118 429.5 549 45.2
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 1.6e-117 427.6 513 50.1
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 2.1e-117 427.2 432 53.0
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 2.1e-117 427.2 480 50.2
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 4.7e-117 426.0 631 42.6
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 4.7e-117 426.0 508 47.2
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.8e-116 424.1 454 51.3
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 4.0e-116 422.9 481 47.6
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 1.2e-115 421.4 538 44.6
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 1.2e-115 421.4 509 47.0
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 1.7e-114 417.5 565 44.8
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 2.2e-114 417.2 534 45.7
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 2.9e-114 416.8 522 45.4
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 2.9e-114 416.8 555 47.0
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.9e-114 416.8 593 43.7
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 3.8e-114 416.4 564 45.7
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 4.9e-114 416.0 522 45.2
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 4.9e-114 416.0 517 45.5
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 4.9e-114 416.0 559 43.8
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 3.2e-113 413.3 519 45.7
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 5.4e-113 412.5 537 43.9
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 2.1e-112 410.6 572 45.5
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 2.1e-112 410.6 421 53.4
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 6.0e-112 409.1 514 45.7
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.1e-110 404.8 519 45.5
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 1.5e-110 404.4 420 52.4
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 4.3e-110 402.9 523 44.4
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 7.3e-110 402.1 608 41.9
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 9.6e-110 401.7 541 43.3
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 1.2e-107 394.8 595 42.2
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 2.6e-107 393.7 448 49.8
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 2.2e-106 390.6 435 49.2
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 3.8e-106 389.8 497 45.1
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 8.4e-106 388.7 498 44.8
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.3e-103 380.6 556 42.1
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 1.1e-102 378.3 513 43.5
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 2.1e-101 374.0 482 45.9
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 2.8e-101 373.6 543 42.9
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.6e-101 373.2 518 43.6
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 1.4e-100 371.3 554 42.2
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 3.1e-100 370.2 610 39.7
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 4.0e-100 369.8 563 41.0
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 1.5e-99 367.9 566 41.5
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 9.9e-99 365.2 481 43.7
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 4.9e-98 362.8 475 44.2
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.4e-97 360.5 510 42.5
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 1.2e-96 358.2 392 53.1
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 2.7e-96 357.1 472 42.6
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 1.3e-95 354.8 459 44.0
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 1.3e-95 354.8 472 43.2
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 6.7e-95 352.4 468 43.4
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 1.1e-94 351.7 476 43.7
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 1.5e-94 351.3 476 43.5
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 3.3e-94 350.1 468 43.8
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 4.3e-94 349.7 468 43.2
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 4.3e-94 349.7 468 43.2
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 5.6e-94 349.4 368 51.4
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 7.4e-94 349.0 541 39.2
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 1.1e-89 335.1 457 46.4
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 1.1e-89 335.1 514 42.0
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 2.5e-89 334.0 505 42.2
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.7e-88 330.5 497 40.4
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 1.0e-82 312.0 507 40.2
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 7.9e-80 302.4 477 38.4
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 6.7e-79 299.3 239 60.3
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 1.3e-77 295.0 572 36.9
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 1.3e-77 295.0 536 37.3
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.1e-68 265.4 398 46.5
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.7e-64 250.8 473 36.2
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 1.4e-63 248.4 315 48.6
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 7.4e-62 242.7 295 50.5
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.2e-61 241.1 368 41.3
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 2.4e-60 237.7 307 47.2
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 3.5e-59 233.8 308 46.4
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.7e-58 231.5 247 51.0
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 3.8e-58 230.3 171 62.0
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 8.2e-53 212.6 237 47.7
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 8.0e-48 196.1 345 37.7
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 1.0e-47 195.7 383 36.6
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 1.3e-42 178.7 372 37.4
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 2.3e-39 167.9 322 35.4
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 5.7e-38 163.3 138 57.2
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 1.3e-37 162.2 313 34.8
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.6e-35 155.2 373 32.4
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 5.9e-35 153.3 373 33.0
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 6.1e-32 143.3 213 39.9
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 1.0e-31 142.5 236 36.4
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.4e-28 131.3 229 40.2
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.6e-27 128.6 290 32.1
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.0e-27 128.3 90 62.2
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.0e-27 128.3 90 62.2
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 6.1e-24 116.7 132 44.7
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.1e-20 105.9 157 43.3
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 3.2e-20 104.4 166 45.8
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 9.2e-20 102.8 255 30.6
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 9.2e-20 102.8 363 24.8
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 1.9e-17 95.1 254 29.1
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 1.9e-17 95.1 254 29.1
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 1.9e-17 95.1 254 29.1
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 5.6e-17 93.6 254 28.3
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 5.6e-17 93.6 254 28.3
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-16 92.0 333 26.1


User provided reference genes

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