Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 3819.6 1980 100.0
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 3703.3 1980 96.7
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 0.0e+00 2509.9 2003 66.2
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 0.0e+00 2267.3 2007 60.7
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 2210.3 2013 59.1
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 2131.7 2024 57.6
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 0.0e+00 2130.1 2036 57.0
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 0.0e+00 2114.7 1987 58.2
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 0.0e+00 2105.9 1987 57.6
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2100.1 2010 56.7
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 0.0e+00 2073.5 1975 56.2
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 0.0e+00 2069.7 2070 55.2
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 0.0e+00 2061.2 1993 55.6
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 0.0e+00 2054.3 1976 55.6
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 0.0e+00 2044.2 1993 55.7
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 2036.5 1989 55.7
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2025.4 1989 55.8
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 0.0e+00 2025.0 1994 54.9
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 0.0e+00 2000.7 1989 55.7
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1993.4 1976 54.4
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 0.0e+00 1991.9 1987 54.4
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 1990.3 2018 54.7
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 0.0e+00 1986.1 1991 55.2
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 1983.4 2026 53.9
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1978.8 1992 55.0
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1966.0 1993 54.8
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 0.0e+00 1963.3 2005 55.2
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 0.0e+00 1958.7 1993 54.2
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 0.0e+00 1942.5 2096 52.4
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 1913.3 2205 50.2
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 0.0e+00 1893.2 1996 52.4
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 0.0e+00 1882.5 1985 52.0
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 0.0e+00 1879.8 1987 51.5
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 0.0e+00 1874.8 1998 52.2
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 1867.4 1789 55.7
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1867.0 1995 52.2
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 1858.2 2069 50.0
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 1854.3 2007 50.3
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 0.0e+00 1847.8 1986 51.4
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 1847.4 1989 51.5
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 1838.2 2007 49.5
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 1832.8 1989 51.1
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 1823.5 1986 50.2
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 0.0e+00 1822.4 1990 51.1
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 0.0e+00 1819.3 1995 51.3
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 0.0e+00 1815.0 1985 50.4
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1810.0 1986 50.2
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1808.1 2074 49.3
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 0.0e+00 1785.8 1972 50.4
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 0.0e+00 1784.2 1982 50.0
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1772.3 1986 49.5
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1762.7 1994 49.8
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1761.9 2083 48.2
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 0.0e+00 1758.8 1991 49.6
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 0.0e+00 1758.4 1989 49.1
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 0.0e+00 1747.3 1985 49.5
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1744.2 2135 47.8
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 0.0e+00 1742.6 1983 48.9
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 0.0e+00 1728.0 1984 49.2
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1723.0 1994 48.6
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 0.0e+00 1721.8 1997 48.6
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1721.8 2195 45.0
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1721.1 1994 48.7
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 0.0e+00 1719.5 1997 48.6
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 0.0e+00 1718.0 2010 48.0
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 0.0e+00 1706.8 1985 48.5
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1705.6 2041 47.8
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 0.0e+00 1705.6 1995 49.1
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 0.0e+00 1692.6 1990 48.9
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 1682.2 1826 49.8
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 0.0e+00 1657.5 1965 47.7
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 0.0e+00 1645.2 1981 47.2
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 0.0e+00 1594.7 2033 45.5
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 0.0e+00 1570.4 1988 45.4
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 0.0e+00 1552.7 1745 50.1
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 0.0e+00 1416.7 1988 43.7
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 0.0e+00 1328.9 1392 52.9
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 0.0e+00 1256.5 1518 49.5
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 0.0e+00 1230.3 2326 37.4
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1203.7 1414 49.3
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 1203.0 1276 53.4
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 0.0e+00 1179.9 1397 50.2
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 7.6e-305 1051.6 2028 35.6
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 1.6e-299 1033.9 2084 33.2
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 2.5e-287 993.4 2090 32.5
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 1.6e-278 964.1 2099 31.6
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 3.3e-276 956.4 1251 45.3
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 1.3e-259 901.4 1225 43.7
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 2.2e-243 847.4 1097 44.1
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 5.9e-241 839.3 797 54.7
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 4.9e-235 819.7 1320 39.3
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 3.5e-233 813.5 1482 35.2
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 9.5e-231 805.4 721 58.5
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 1.2e-230 805.1 603 66.2
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 4.0e-221 773.5 1032 43.7
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 7.8e-217 759.2 665 59.7
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 3.6e-206 723.8 864 43.9
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 2.8e-182 644.4 722 48.1
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 5.5e-178 630.2 751 47.1
Cpa.g.sc37.188 Carica papaya HOM05D004110 ORTHO05D004810 2.2e-171 608.2 476 63.0
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 2.8e-166 591.3 734 45.4
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 1.0e-160 572.8 748 44.4
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 9.4e-154 549.7 2195 24.3
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 7.5e-135 486.9 805 41.0
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.2e-127 463.0 574 49.3
SHI05691 Sapria himalayana HOM05D004110 ORTHO05D004810 8.0e-121 440.3 501 47.3
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 1.3e-118 433.0 662 40.8
Glyma.11G098551 Glycine max HOM05D004110 ORTHO05D004810 8.3e-118 430.3 337 61.4
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 2.7e-116 425.2 781 35.0
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 1.9e-106 392.5 625 38.2
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 5.6e-106 391.0 774 35.5
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 2.6e-103 382.1 422 52.6
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 1.2e-95 356.7 392 51.3
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 6.6e-91 340.9 618 37.7
CSS0003289 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 7.3e-74 284.3 202 67.8
ClCG02G011580 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.2e-71 276.9 232 59.1
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 1.1e-56 227.3 482 30.3
Duzib248G1214 Durio zibethinus HOM05D004110 ORTHO05D004810 1.8e-56 226.5 190 58.9
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 3.6e-44 185.7 425 32.5
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 6.7e-43 181.4 334 38.9
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 8.8e-43 181.0 209 48.3
Solyc11g039890.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 2.2e-41 176.4 162 53.7
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 3.7e-41 175.6 136 65.4
CSS0015162 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 4.7e-36 158.7 100 74.0
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 7.4e-34 151.4 590 25.4
CSS0008861 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 3.7e-33 149.1 136 52.9
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 2.0e-31 143.3 701 24.1
MD10G1119100 Malus domestica HOM05D004110 ORTHO05D004810 5.0e-30 138.7 132 53.0
MCO14G095 Micromonas commoda HOM05D004110 ORTHO05D004810 1.5e-29 137.1 551 25.2
ClCG02G011590 Citrullus lanatus HOM05D004110 ORTHO05D004810 9.4e-29 134.4 117 53.0
Zm00001eb026660 Zea mays HOM05D004110 ORTHO05D004810 1.7e-25 123.6 135 43.7
ClCG02G011550 Citrullus lanatus HOM05D004110 ORTHO05D004810 2.2e-25 123.2 148 45.9
Hma1.2p1_0032F.1_g019640 Hydrangea macrophylla HOM05D004110 ORTHO05D004810 4.8e-25 122.1 99 59.6
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 5.9e-23 115.2 126 44.4
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.5e-21 110.5 211 37.0
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 1.9e-21 110.2 153 40.5
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 5.5e-21 108.6 131 45.0
Os10g0154566 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 2.1e-20 106.7 121 42.1
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 4.0e-19 102.4 138 43.5
Gohir.A12G039250 Gossypium hirsutum HOM05D004110 ORTHO05D004810 1.2e-18 100.9 100 50.0
arahy.Tifrunner.gnm1.ann1.G8A5JV Arachis hypogaea HOM05D004110 ORTHO05D004810 2.6e-18 99.8 89 52.8
CSS0014003 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 2.6e-18 99.8 91 58.2
AagrBONN_evm.TU.Sc2ySwM_344.4149 Anthoceros agrestis HOM05D004110 ORTHO05D004810 1.1e-16 94.4 163 38.7
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 3.5e-15 89.4 110 49.1
BolC8t52466H Brassica oleracea HOM05D004110 ORTHO05D004810 1.9e-13 83.6 86 48.8
HanXRQChr09g0252681 Helianthus annuus HOM05D004110 ORTHO05D004810 1.9e-13 83.6 59 61.0
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 2.5e-13 83.2 116 42.2
Psat1g093160 Pisum sativum HOM05D004110 ORTHO05D004810 6.1e-12 78.6 71 53.5
SHI05692 Sapria himalayana HOM05D004110 ORTHO05D004810 1.4e-11 77.4 81 54.3
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 1.8e-11 77.0 169 32.0
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 2.3e-11 76.6 63 61.9
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 9.8e-10 71.2 83 45.8
Duzib248G0615 Durio zibethinus HOM05D004110 ORTHO05D004810 1.3e-09 70.9 173 30.1
CBR_g66117 Chara braunii HOM05D000019 ORTHO05D001702 2.4e-08 66.6 97 34.0
Psat5g216640 Pisum sativum HOM05D000564 ORTHO05D015028 2.4e-08 66.6 148 37.8
VMungo0464G1786 Vigna mungo HOM05D004110 ORTHO05D004810 2.4e-08 66.6 55 54.5
Sabra04G0113100 Salix brachista HOM05D004110 ORTHO05D004810 3.5e-07 62.8 106 37.7
CARHR053140 Cardamine hirsuta HOM05D004110 ORTHO05D004810 3.8e-06 59.3 79 45.6
Psat6g113120 Pisum sativum HOM05D020801 ORTHO05D004810 6.6e-06 58.5 51 45.1


User provided reference genes

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