Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G0377 Papaver somniferum HOM05D005694 ORTHO05D007402 4.0e-224 781.2 416 100.0
PSO675G2151 Papaver somniferum HOM05D005694 ORTHO05D007402 2.3e-211 738.8 419 92.4
Aqoxy6G02871 Aquilegia oxysepala HOM05D005694 ORTHO05D007402 5.4e-160 568.2 385 73.5
Nn1g04704 Nelumbo nucifera HOM05D005694 ORTHO05D007402 1.8e-155 553.1 358 75.7
Prupe.6G229100 Prunus persica HOM05D005694 ORTHO05D007402 2.8e-153 545.8 379 70.2
Thecc.01G063300 Theobroma cacao HOM05D005694 ORTHO05D007402 2.8e-153 545.8 369 73.4
Psat4g084360 Pisum sativum HOM05D005694 ORTHO05D007402 6.3e-153 544.7 368 74.2
FvH4_1g16760 Fragaria vesca HOM05D005694 ORTHO05D007402 1.1e-152 543.9 367 72.2
CANSAT25G2140 Cannabis sativa HOM05D005694 ORTHO05D007402 1.8e-152 543.1 389 69.4
Manes.12G108400 Manihot esculenta HOM05D005694 ORTHO05D007402 2.4e-152 542.7 383 71.8
FAN23G2399 Fragaria x ananassa HOM05D005694 ORTHO05D007402 4.1e-152 542.0 382 69.9
RcHm_v2.0_Chr2g0106661 Rosa chinensis HOM05D005694 ORTHO05D007402 1.2e-151 540.4 405 66.4
Haze_15351 Corylus avellana HOM05D005694 ORTHO05D007402 1.6e-151 540.0 386 69.4
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 1.6e-151 540.0 376 71.0
CANSAT25G0291 Cannabis sativa HOM05D005694 ORTHO05D007402 2.0e-151 539.7 390 69.0
COL.COLO4_11482 Corchorus olitorius HOM05D005694 ORTHO05D007402 3.5e-151 538.9 386 70.2
TAR381G0027 Trochodendron aralioides HOM05D005694 ORTHO05D007402 3.5e-151 538.9 366 73.5
TAR381G0285 Trochodendron aralioides HOM05D005694 ORTHO05D007402 3.5e-151 538.9 366 73.5
Gorai.007G218000 Gossypium raimondii HOM05D005694 ORTHO05D007402 5.9e-151 538.1 426 65.3
Duzib264G0643 Durio zibethinus HOM05D005694 ORTHO05D007402 1.7e-150 536.6 371 72.0
QL06p040237 Quercus lobata HOM05D005694 ORTHO05D007402 1.7e-150 536.6 385 69.9
Oeu037163.1 Olea europaea HOM05D005694 ORTHO05D007402 3.8e-150 535.4 372 69.9
Hund16366 Selenicereus undatus HOM05D005694 ORTHO05D007402 3.8e-150 535.4 381 69.6
arahy.Tifrunner.gnm1.ann1.ZT89Y7 Arachis hypogaea HOM05D005694 ORTHO05D007402 8.6e-150 534.3 375 71.2
Gohir.D11G203300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 1.9e-149 533.1 372 70.2
Cfa004061 Carpinus fangiana HOM05D005694 ORTHO05D007402 2.5e-149 532.7 386 68.4
FAN19G0282 Fragaria x ananassa HOM05D005694 ORTHO05D007402 3.3e-149 532.3 367 71.1
Lj4g0009127 Lotus japonicus HOM05D005694 ORTHO05D007402 5.6e-149 531.6 367 72.2
FAN26G1197 Fragaria x ananassa HOM05D005694 ORTHO05D007402 7.3e-149 531.2 367 70.8
AL8G44040 Arabidopsis lyrata HOM05D005694 ORTHO05D007402 9.5e-149 530.8 371 68.5
Ciclev10025664m.g Citrus clementina HOM05D005694 ORTHO05D007402 1.2e-148 530.4 383 68.7
Atru.chr3.251 Acer truncatum HOM05D005694 ORTHO05D007402 2.1e-148 529.6 374 70.9
AUR62003938 Chenopodium quinoa HOM05D005694 ORTHO05D007402 4.7e-148 528.5 375 69.1
Potri.005G060500 Populus trichocarpa HOM05D005694 ORTHO05D007402 8.0e-148 527.7 371 70.6
AUR62038254 Chenopodium quinoa HOM05D005694 ORTHO05D007402 1.0e-147 527.3 383 67.4
EL10Ac6g15690 Beta vulgaris HOM05D005694 ORTHO05D007402 1.4e-147 526.9 389 67.6
Lalb_Chr16g0388811 Lupinus albus HOM05D005694 ORTHO05D007402 1.8e-147 526.6 375 70.1
Glyma.17G167200 Glycine max HOM05D005694 ORTHO05D007402 2.3e-147 526.2 380 68.7
SGA_v2.0_scaffold143G35788 Striga asiatica HOM05D005694 ORTHO05D007402 4.0e-147 525.4 372 69.9
TAR625G0863 Trochodendron aralioides HOM05D005694 ORTHO05D007402 5.2e-147 525.0 386 68.9
Sabra05G0051000 Salix brachista HOM05D005694 ORTHO05D007402 1.2e-146 523.9 369 69.4
Aa31LG1G15820 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.6e-146 522.7 373 67.6
Medtr4g094962 Medicago truncatula HOM05D005694 ORTHO05D007402 2.6e-146 522.7 371 70.1
Solyc03g044190.3 Solanum lycopersicum HOM05D005694 ORTHO05D007402 2.6e-146 522.7 379 67.0
MSTRG.2849 Avicennia marina HOM05D005694 ORTHO05D007402 5.7e-146 521.5 382 67.3
Sopen03g008170 Solanum pennellii HOM05D005694 ORTHO05D007402 5.7e-146 521.5 379 66.2
BraA05t22832Z Brassica rapa HOM05D005694 ORTHO05D007402 1.3e-145 520.4 368 67.7
PGR004G1079 Punica granatum HOM05D005694 ORTHO05D007402 2.2e-145 519.6 386 68.1
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 2.9e-145 519.2 371 67.4
A05p41050 Brassica napus HOM05D005694 ORTHO05D007402 2.9e-145 519.2 371 66.8
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 2.9e-145 519.2 371 67.4
Ca_22124_v3 Cicer arietinum L. HOM05D005694 ORTHO05D007402 2.9e-145 519.2 378 68.3
Sp2g29370 Schrenkiella parvula HOM05D005694 ORTHO05D007402 2.9e-145 519.2 371 68.2
MELO3C007585.2 Cucumis melo HOM05D005694 ORTHO05D007402 3.7e-145 518.8 376 70.2
BcaB06g28844 Brassica carinata HOM05D005694 ORTHO05D007402 4.9e-145 518.5 371 66.6
CsaV3_6G043550 Cucumis sativus L. HOM05D005694 ORTHO05D007402 4.9e-145 518.5 376 69.7
CARHR280330 Cardamine hirsuta HOM05D005694 ORTHO05D007402 1.1e-144 517.3 407 63.6
Lsat_1_v5_gn_3_88661 Lactuca sativa HOM05D005694 ORTHO05D007402 2.4e-144 516.2 382 66.8
AT5G67290 Arabidopsis thaliana HOM05D005694 ORTHO05D007402 4.1e-144 515.4 381 65.9
TPR.G23863 Trifolium pratense HOM05D005694 ORTHO05D007402 4.1e-144 515.4 377 69.5
MD02G1178800 Malus domestica HOM05D005694 ORTHO05D007402 5.4e-144 515.0 356 69.9
Migut.H00394 Erythranthe guttata HOM05D005694 ORTHO05D007402 9.2e-144 514.2 385 67.5
Carub.0008s2721 Capsella rubella HOM05D005694 ORTHO05D007402 1.2e-143 513.8 371 67.1
Cpa.g.sc6.99 Carica papaya HOM05D005694 ORTHO05D007402 1.6e-143 513.5 373 66.8
CiPaw.01G012900 Carya illinoinensis HOM05D005694 ORTHO05D007402 1.6e-143 513.5 371 69.0
HanXRQChr12g0377261 Helianthus annuus HOM05D005694 ORTHO05D007402 1.6e-143 513.5 369 68.3
Sed0004561 Sechium edule HOM05D005694 ORTHO05D007402 4.6e-143 511.9 377 68.4
THA.LOC104819246 Tarenaya hassleriana HOM05D005694 ORTHO05D007402 4.6e-143 511.9 376 64.1
VMungo0251G0564 Vigna mungo HOM05D005694 ORTHO05D007402 4.6e-143 511.9 369 67.8
ClCG01G017080 Citrullus lanatus HOM05D005694 ORTHO05D007402 5.9e-143 511.5 376 68.9
Thhalv10004317m.g Eutrema salsugineum HOM05D005694 ORTHO05D007402 7.8e-143 511.1 407 62.9
PGSC0003DMG400014873 Solanum tuberosum HOM05D005694 ORTHO05D007402 7.8e-143 511.1 370 67.3
Actinidia12019 Actinidia chinensis HOM05D005694 ORTHO05D007402 3.9e-142 508.8 357 70.9
ECA246G1807 Erigeron canadensis HOM05D005694 ORTHO05D007402 6.6e-142 508.1 361 69.5
CSS0006569 Camellia sinensis var. sinensis HOM05D005694 ORTHO05D007402 1.9e-141 506.5 361 70.4
arahy.Tifrunner.gnm1.ann1.MA1EVV Arachis hypogaea HOM05D005694 ORTHO05D007402 4.3e-141 505.4 442 60.6
Duzib147G1433 Durio zibethinus HOM05D005694 ORTHO05D007402 4.3e-141 505.4 378 66.9
Nitab4.5_0002657g0010 Nicotiana tabacum HOM05D005694 ORTHO05D007402 5.6e-141 505.0 383 64.8
C05p60220 Brassica napus HOM05D005694 ORTHO05D007402 1.6e-140 503.4 396 62.6
Phvul.003G240300 Phaseolus vulgaris HOM05D005694 ORTHO05D007402 1.6e-140 503.4 369 67.2
Gohir.A11G220300 Gossypium hirsutum HOM05D005694 ORTHO05D007402 8.0e-140 501.1 425 62.8
Nitab4.5_0003962g0030 Nicotiana tabacum HOM05D005694 ORTHO05D007402 1.4e-139 500.4 369 66.1
Peaxi162Scf00365g00618 Petunia axillaris HOM05D005694 ORTHO05D007402 5.2e-139 498.4 377 65.0
Rhsim10G0112600 Rhododendron simsii HOM05D005694 ORTHO05D007402 9.2e-136 487.6 361 66.2
Cc11_g04760 Coffea canephora HOM05D005694 ORTHO05D007402 4.6e-135 485.3 376 66.0
Lj4g0018653 Lotus japonicus HOM05D005694 ORTHO05D007402 5.0e-134 481.9 370 67.6
Sc16g0005230 Simmondsia chinensis HOM05D005694 ORTHO05D007402 5.0e-134 481.9 379 62.5
DCAR_025759 Daucus carota HOM05D005694 ORTHO05D007402 1.5e-133 480.3 344 70.1
Glyma.05G097800 Glycine max HOM05D005694 ORTHO05D007402 2.5e-133 479.6 369 66.7
Dinv26866 Davidia involucrata HOM05D005694 ORTHO05D007402 3.3e-133 479.2 372 66.1
unitig_46.g18707 Utricularia gibba HOM05D005694 ORTHO05D007402 6.2e-132 474.9 377 62.1
ATR1098G030 Amborella trichopoda HOM05D005694 ORTHO05D007402 4.1e-128 462.2 366 62.8
Eucgr.I00761 Eucalyptus grandis HOM05D005694 ORTHO05D007402 6.0e-127 458.4 373 62.7
CDE06G0326 Ceratophyllum demersum HOM05D005694 ORTHO05D007402 2.3e-126 456.4 363 63.4
Eucgr.I00787 Eucalyptus grandis HOM05D005694 ORTHO05D007402 3.0e-126 456.1 373 62.5
Sc16g0005220 Simmondsia chinensis HOM05D005694 ORTHO05D007402 6.2e-124 448.4 379 59.6
Os07g0155100 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 2.9e-121 439.5 379 59.6
Dinv30033 Davidia involucrata HOM05D005694 ORTHO05D007402 4.9e-121 438.7 357 63.3
HPP92_017733 Vanilla planifolia HOM05D005694 ORTHO05D007402 1.1e-120 437.6 366 61.2
Zm00001eb300250 Zea mays HOM05D005694 ORTHO05D007402 6.0e-119 431.8 378 59.8
vmacro05254 Vaccinium macrocarpon HOM05D005694 ORTHO05D007402 6.9e-115 418.3 392 58.7
Mapoly0178s0017 Marchantia polymorpha HOM05D005694 ORTHO05D007402 1.7e-113 413.7 387 54.8
Pp3c14_12180 Physcomitrium patens HOM05D005694 ORTHO05D007402 2.3e-110 403.3 370 57.8
HanXRQChr02g0044351 Helianthus annuus HOM05D005694 ORTHO05D007402 1.9e-109 400.2 371 57.1
AagrBONN_evm.TU.Sc2ySwM_117.3787 Anthoceros agrestis HOM05D005694 ORTHO05D007402 7.3e-109 398.3 391 53.5
SEGI_26559 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 2.8e-108 396.4 368 55.4
SMO367G0384 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 3.4e-106 389.4 377 52.8
SMO351G0208 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 7.6e-106 388.3 380 51.8
ECA238G4251 Erigeron canadensis HOM05D005694 ORTHO05D007402 1.3e-102 377.5 369 55.8
HPP92_017700 Vanilla planifolia HOM05D005694 ORTHO05D007402 1.2e-95 354.4 314 59.6
Lj7C77T1 Lonicera japonica HOM05D005694 ORTHO05D007402 2.2e-89 333.6 261 65.5
CAN.G572.58 Capsicum annuum HOM05D005694 ORTHO05D007402 3.5e-87 326.2 260 62.3
SEGI_01647 Sequoiadendron giganteum HOM05D005694 ORTHO05D007402 6.0e-87 325.5 370 48.1
Aa31LG1G15830 Aethionema arabicum HOM05D005694 ORTHO05D007402 6.7e-86 322.0 222 66.2
Mapoly0178s0018 Marchantia polymorpha HOM05D005694 ORTHO05D007402 7.4e-85 318.5 318 52.5
Cre16.g671450 Chlamydomonas reinhardtii HOM05D005694 ORTHO05D007402 4.3e-77 292.7 405 43.2
FAN28G1711 Fragaria x ananassa HOM05D005694 ORTHO05D007402 3.1e-75 286.6 173 78.0
FAN28G1889 Fragaria x ananassa HOM05D005694 ORTHO05D007402 3.1e-75 286.6 173 78.0
MCO03G407 Micromonas commoda HOM05D005694 ORTHO05D007402 2.0e-58 230.7 382 39.8
Actinidia36463 Actinidia chinensis HOM05D005694 ORTHO05D007402 7.5e-53 212.2 166 63.3
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 1.7e-44 184.5 401 35.4
Lj7A77T5 Lonicera japonica HOM05D005694 ORTHO05D007402 1.4e-43 181.4 118 74.6
Cfa023451 Carpinus fangiana HOM05D000115 ORTHO05D005317 9.1e-43 178.7 401 34.2
Aa31LG1G15840 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.3e-38 164.1 114 69.3
Aa31sc2295G20 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.8e-36 157.1 128 60.2
Aa31LG1G18440 Aethionema arabicum HOM05D005694 ORTHO05D007402 2.9e-33 147.1 142 57.7
Medtr8g072720 Medicago truncatula HOM05D005694 ORTHO05D007402 2.2e-28 131.0 81 77.8
PRCOL_00002834 Prasinoderma coloniale HOM05D005694 ORTHO05D007402 1.3e-25 121.7 387 29.7
Os01g0594800 Oryza sativa ssp. japonica HOM05D005694 ORTHO05D007402 4.4e-13 80.1 86 51.2
Cfa026332 Carpinus fangiana HOM05D005694 ORTHO05D123404 5.8e-13 79.7 341 24.6
BcaNung00805 Brassica carinata HOM05D005694 ORTHO05D007402 4.6e-10 70.1 69 52.2
Aa31LG1G18450 Aethionema arabicum HOM05D005694 ORTHO05D007402 7.8e-10 69.3 73 46.6
Aa31sc2295G10 Aethionema arabicum HOM05D005694 ORTHO05D007402 7.8e-10 69.3 73 46.6
BcaC07g37383 Brassica carinata HOM05D005694 ORTHO05D031998 1.9e-08 64.7 64 51.6
BolC8t47687H Brassica oleracea HOM05D005694 ORTHO05D031998 1.9e-08 64.7 64 51.6
BolC8t47689H Brassica oleracea HOM05D005694 ORTHO05D031998 1.9e-08 64.7 64 51.6
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 6.2e-07 59.7 394 22.6


User provided reference genes

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