Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 0.0e+00 1176.8 694 100.0
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 1.5e-308 1062.4 694 91.9
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 4.9e-190 668.7 743 61.8
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 3.0e-184 649.4 526 65.0
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 1.1e-176 624.4 524 64.9
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 5.2e-176 622.1 526 64.8
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 3.4e-175 619.4 527 62.0
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 7.5e-175 618.2 519 65.1
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 2.9e-174 616.3 726 57.3
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 6.4e-174 615.1 527 64.5
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 3.2e-173 612.8 526 62.0
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 3.2e-173 612.8 603 62.7
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 5.4e-173 612.1 732 55.7
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 2.7e-172 609.8 523 62.3
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 2.7e-172 609.8 718 56.8
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 2.7e-172 609.8 524 64.9
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 3.5e-172 609.4 522 64.2
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 4.6e-172 609.0 517 63.8
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 6.0e-172 608.6 530 62.3
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 7.8e-172 608.2 486 64.6
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 1.0e-171 607.8 522 64.0
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.7e-171 607.1 715 57.3
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 2.3e-171 606.7 521 63.5
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 3.9e-171 605.9 517 63.6
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 8.6e-171 604.7 714 57.0
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.1e-170 604.4 717 56.9
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 2.5e-170 603.2 524 63.4
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 5.6e-170 602.1 500 65.4
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 5.6e-170 602.1 523 62.3
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 9.5e-170 601.3 729 56.0
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 2.8e-169 599.7 620 61.0
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 4.7e-169 599.0 525 64.0
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 1.4e-168 597.4 523 63.3
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.3e-168 596.7 720 56.0
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 4.0e-168 595.9 486 66.7
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 8.9e-168 594.7 515 62.9
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 1.5e-167 594.0 524 62.4
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 2.0e-167 593.6 524 64.1
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 4.4e-167 592.4 524 63.4
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 5.8e-167 592.0 485 63.3
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 4.9e-166 589.0 513 64.7
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 1.4e-165 587.4 513 64.5
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 5.4e-165 585.5 512 64.5
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 1.2e-164 584.3 735 55.4
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 2.7e-164 583.2 531 62.3
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 3.5e-164 582.8 486 65.0
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 7.8e-164 581.6 487 65.7
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.0e-163 581.3 394 75.1
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 1.3e-163 580.9 524 62.0
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 1.7e-163 580.5 518 62.5
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 1.9e-162 577.0 512 62.5
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 5.6e-162 575.5 522 60.2
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 7.3e-162 575.1 690 58.3
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 1.2e-161 574.3 422 68.5
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 2.8e-161 573.2 511 60.7
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 4.7e-161 572.4 621 59.4
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 4.7e-161 572.4 454 64.5
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 1.8e-160 570.5 452 65.3
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.5e-159 567.4 408 69.9
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.6e-159 566.6 471 64.8
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 9.9e-159 564.7 525 61.0
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 4.9e-158 562.4 530 59.2
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 5.4e-157 558.9 519 61.3
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 6.0e-156 555.4 518 59.5
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 1.3e-155 554.3 487 61.2
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 1.7e-155 553.9 511 58.3
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 2.3e-155 553.5 432 64.8
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 6.6e-155 552.0 479 61.6
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 8.7e-155 551.6 620 58.7
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 1.5e-154 550.8 490 62.0
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 1.5e-154 550.8 513 60.0
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 7.3e-154 548.5 511 61.4
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 1.2e-153 547.7 536 59.3
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 4.7e-153 545.8 560 56.6
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 4.7e-153 545.8 522 56.5
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 8.1e-153 545.0 522 59.6
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 1.4e-152 544.3 452 62.8
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 2.2e-150 537.0 509 58.7
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 6.4e-150 535.4 455 61.8
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 1.1e-149 534.6 521 59.3
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 1.4e-149 534.3 484 62.4
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 1.7e-147 527.3 499 56.9
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 2.3e-147 526.9 483 60.0
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 3.9e-147 526.2 479 58.2
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 5.1e-147 525.8 508 59.3
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 6.6e-147 525.4 519 57.2
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 3.3e-146 523.1 445 64.7
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 3.3e-146 523.1 435 63.2
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 2.1e-145 520.4 419 64.7
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 6.9e-144 515.4 520 57.9
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 1.1e-141 508.1 648 53.7
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 1.4e-141 507.7 458 60.3
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 1.2e-140 504.6 522 57.7
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 1.6e-140 504.2 534 54.5
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 2.3e-139 500.4 419 61.3
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 1.9e-138 497.3 518 54.2
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 5.6e-138 495.7 419 60.4
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 6.2e-137 492.3 532 53.6
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 2.6e-135 486.9 365 65.5
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 8.4e-134 481.9 446 57.6
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 9.3e-133 478.4 511 52.3
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 2.7e-132 476.9 528 50.4
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 3.9e-131 473.0 424 59.2
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 1.5e-130 471.1 459 56.0
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 7.4e-130 468.8 449 57.2
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 2.8e-129 466.8 526 52.7
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 2.4e-128 463.8 441 57.1
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 5.8e-127 459.1 613 55.1
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 3.0e-123 446.8 527 49.9
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 4.3e-122 443.0 499 54.1
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 3.7e-113 413.3 379 57.3
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 1.1e-112 411.8 332 63.0
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 1.2e-108 398.3 358 63.7
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 1.8e-104 384.4 440 49.8
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 3.4e-103 380.2 368 53.0
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 2.2e-102 377.5 490 44.9
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 5.0e-102 376.3 434 48.4
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 4.2e-101 373.2 340 57.6
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.2e-100 371.7 286 66.1
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 8.8e-99 365.5 442 49.3
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 1.0e-86 325.5 282 64.9
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 8.0e-84 315.8 211 73.5
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 5.4e-80 303.1 493 43.2
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 4.4e-74 283.5 396 45.7
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 2.4e-72 277.7 365 43.8
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 2.3e-70 271.2 262 63.7
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 2.9e-65 254.2 171 71.9
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 7.0e-64 249.6 490 38.0
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 2.3e-59 234.6 211 57.8
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 2.7e-47 194.5 190 52.6
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 8.1e-44 183.0 208 48.1
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 4.2e-40 170.6 170 54.7
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 1.9e-37 161.8 164 61.6
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 1.2e-34 152.5 520 26.0
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 5.3e-27 127.1 121 60.3
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 7.6e-26 123.2 95 62.1
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 9.9e-26 122.9 98 59.2
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 2.2e-25 121.7 98 58.2
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 5.4e-24 117.1 236 33.9
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.3e-22 111.7 133 60.2
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 6.7e-22 110.2 358 27.4
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 1.8e-19 102.1 88 59.1
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 7.6e-18 96.7 87 58.6
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 5.5e-16 90.5 162 35.8
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 3.3e-13 81.3 87 66.7
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 9.6e-13 79.7 116 44.0
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 6.2e-12 77.0 121 40.5
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 1.4e-11 75.9 111 40.5
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 1.7e-09 68.9 106 38.7
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 1.6e-07 62.4 44 68.2
CAN.G1143.9 Capsicum annuum HOM05D000602 ORTHO05D001147 1.6e-07 62.4 86 45.3
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 8.7e-06 56.6 56 53.6


User provided reference genes

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