Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1952.6 998 100.0
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1248.0 1010 66.9
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1241.1 993 66.5
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1237.2 994 66.6
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1217.2 994 65.4
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1208.7 997 64.6
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1208.4 994 65.2
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1203.7 997 64.1
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1202.6 1001 64.6
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1199.5 994 64.9
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1197.6 994 65.3
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1197.2 1016 63.6
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1196.8 994 64.6
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1194.1 994 64.5
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1193.3 987 64.5
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1192.2 991 64.3
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1191.4 992 64.0
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1186.8 1000 64.5
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1183.7 1002 63.5
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1181.8 985 64.2
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1177.2 1012 62.5
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1175.6 1001 63.3
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1174.5 1021 62.5
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1173.3 1021 62.6
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1172.9 1032 62.2
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1172.1 987 63.1
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1172.1 994 63.4
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1170.2 998 62.4
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1169.1 958 65.2
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1168.7 999 62.7
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1167.9 993 63.7
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1167.5 1003 61.8
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1167.1 1002 63.3
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1160.6 988 63.0
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1160.2 1011 62.9
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1158.3 988 63.0
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1155.6 937 65.8
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1153.7 982 62.2
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1147.5 993 62.8
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1147.1 1018 60.5
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1142.9 982 61.5
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1141.7 1015 62.0
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1141.3 983 62.1
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1140.2 987 61.8
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1139.8 997 61.3
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1139.0 997 61.3
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1135.6 994 62.2
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1134.8 1003 60.9
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1134.0 995 61.8
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1134.0 991 60.9
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1131.7 994 62.1
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1130.2 996 61.3
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1129.8 996 61.2
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1129.0 992 61.0
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1129.0 998 61.5
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1128.2 982 62.1
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1127.1 1003 61.7
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1127.1 995 61.6
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1127.1 1001 61.2
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1126.7 996 61.9
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1125.2 1017 60.9
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1124.8 1000 60.8
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1124.8 1000 60.8
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1124.4 1005 60.1
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1122.1 985 61.9
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1122.1 1003 61.4
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1121.7 1003 61.4
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1121.3 990 61.1
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1119.4 1018 59.7
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1117.4 1002 61.4
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1116.3 1003 60.6
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1114.8 992 61.6
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1114.4 1026 60.4
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1113.2 1009 61.0
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1112.4 1002 60.8
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1110.1 993 60.6
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1107.0 1001 60.2
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1107.0 995 60.2
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1104.0 1000 60.5
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1102.8 1043 58.5
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1102.0 1002 60.5
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1094.7 984 60.8
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1091.6 983 60.0
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1088.9 1028 57.4
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1087.4 1000 58.3
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1086.6 987 59.8
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1085.1 982 59.7
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1081.6 988 58.8
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1078.2 984 59.5
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1075.5 1003 58.0
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1075.1 1008 58.0
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 6.8e-312 1073.5 1002 59.2
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 2.0e-311 1072.4 991 59.3
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 2.7e-311 1072.0 986 59.0
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 2.3e-310 1068.9 983 59.4
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 5.2e-310 1067.8 948 60.3
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 1.7e-308 1062.8 1010 58.7
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 3.7e-308 1061.6 983 58.7
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 3.7e-308 1061.6 883 64.8
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 8.2e-308 1060.4 988 58.9
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 1.4e-307 1059.7 988 58.9
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 4.1e-307 1058.1 1010 58.5
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 5.3e-307 1057.7 1004 58.6
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 9.1e-307 1057.0 988 58.7
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 2.0e-306 1055.8 1002 58.4
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 2.7e-306 1055.4 1003 57.5
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 1.3e-305 1053.1 993 58.3
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 8.5e-305 1050.4 873 64.1
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 8.5e-305 1050.4 998 58.0
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 1.5e-304 1049.7 1015 57.7
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 3.6e-303 1045.0 983 59.2
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 6.1e-303 1044.3 980 58.7
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 5.2e-302 1041.2 1003 58.0
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 6.8e-302 1040.8 901 63.3
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 1.3e-300 1036.6 996 58.0
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 2.2e-300 1035.8 1010 57.7
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 3.7e-300 1035.0 1002 58.3
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 2.4e-299 1032.3 1000 56.9
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 1.1e-296 1023.5 1002 57.1
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 4.7e-295 1018.1 996 57.1
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 8.8e-294 1013.8 1019 56.1
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.5e-288 996.5 1051 54.4
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 7.3e-288 994.2 997 55.7
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 1.2e-277 960.3 922 57.0
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 1.3e-268 930.2 856 59.8
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 7.8e-266 921.0 1002 53.8
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 1.1e-264 917.1 1007 53.1
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 1.2e-258 897.1 931 53.9
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 6.6e-257 891.3 899 55.6
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.6e-247 860.1 768 62.1
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 1.2e-242 844.0 821 56.3
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 4.6e-226 788.9 991 47.2
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 3.9e-225 785.8 992 46.8
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 1.5e-224 783.9 1003 49.5
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 2.4e-222 776.5 1038 46.1
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 8.5e-220 768.1 982 46.3
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 1.4e-219 767.3 733 59.9
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.2e-219 765.8 976 46.3
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 3.4e-213 746.1 978 45.9
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 1.4e-198 697.6 833 47.4
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 2.4e-198 696.8 701 56.9
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 8.8e-193 678.3 819 48.2
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 6.1e-178 629.0 898 44.2
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 9.8e-168 595.1 650 51.8
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.7e-159 567.8 931 39.1
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 6.2e-154 549.3 817 43.9
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 4.4e-152 543.1 627 51.8
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 3.7e-151 540.0 694 50.4
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 1.2e-144 518.5 659 48.9
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.1e-131 475.3 622 47.6
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 1.6e-130 471.5 1128 32.3
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.6e-130 470.3 625 46.9
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 1.6e-109 401.7 376 56.9
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 9.7e-107 392.5 643 42.0
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 3.0e-92 344.4 533 43.5
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.9e-86 325.1 265 64.9
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.6e-72 278.9 309 52.1
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.7e-71 275.4 234 63.7
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 6.8e-68 263.5 245 58.8
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 2.6e-59 235.0 659 31.3
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 9.2e-57 226.5 262 51.9
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 2.0e-48 198.7 898 25.1
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 2.7e-48 198.4 520 30.0
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 3.9e-47 194.5 204 51.0
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 5.8e-43 180.6 145 65.5
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 4.9e-42 177.6 145 64.8
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.7e-40 171.8 174 51.7
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.3e-36 158.7 213 40.4
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 5.4e-33 147.5 236 39.8
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 1.3e-23 116.3 111 52.3
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 9.6e-22 110.2 149 41.6
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 5.4e-17 94.4 95 48.4
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 5.1e-15 87.8 97 45.4
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 1.5e-14 86.3 95 45.3
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 6.2e-13 80.9 63 68.3
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 4.2e-09 68.2 66 54.5


User provided reference genes

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