Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G4609 Papaver somniferum HOM05D005717 ORTHO05D007221 0.0e+00 1793.9 936 100.0
PSO017G2079 Papaver somniferum HOM05D005717 ORTHO05D007221 0.0e+00 1535.0 979 83.8
GSVIVG01008170001 Vitis vinifera HOM05D005717 ORTHO05D007221 9.2e-301 1036.9 978 57.4
Ciclev10018495m.g Citrus clementina HOM05D005717 ORTHO05D007221 3.6e-297 1025.0 974 59.0
Cfa019855 Carpinus fangiana HOM05D005717 ORTHO05D007221 2.6e-295 1018.8 963 58.3
Atru.chr9.636 Acer truncatum HOM05D005717 ORTHO05D007221 2.7e-292 1008.8 971 59.1
Rhsim12G0147200 Rhododendron simsii HOM05D005717 ORTHO05D007221 2.3e-291 1005.7 982 57.7
TAR629G3288 Trochodendron aralioides HOM05D005717 ORTHO05D007221 5.0e-291 1004.6 991 59.0
Lj5A138T57 Lonicera japonica HOM05D005717 ORTHO05D007221 6.6e-291 1004.2 977 57.9
Nitab4.5_0002805g0040 Nicotiana tabacum HOM05D005717 ORTHO05D007221 1.5e-290 1003.0 985 56.6
CSS0018836 Camellia sinensis var. sinensis HOM05D005717 ORTHO05D007221 3.3e-290 1001.9 983 58.4
MELO3C017258.2 Cucumis melo HOM05D005717 ORTHO05D007221 3.3e-290 1001.9 961 57.5
CsaV3_1G003250 Cucumis sativus L. HOM05D005717 ORTHO05D007221 4.3e-290 1001.5 962 57.9
QL10p021360 Quercus lobata HOM05D005717 ORTHO05D007221 5.6e-290 1001.1 965 56.8
Sabra12G0046300 Salix brachista HOM05D005717 ORTHO05D007221 1.0e-288 996.9 978 56.6
Nn4g23582 Nelumbo nucifera HOM05D005717 ORTHO05D007221 1.4e-288 996.5 985 58.4
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 2.3e-288 995.7 984 56.7
arahy.Tifrunner.gnm1.ann1.V6HMAT Arachis hypogaea HOM05D005717 ORTHO05D007221 8.9e-288 993.8 966 56.5
ClCG06G015370 Citrullus lanatus HOM05D005717 ORTHO05D007221 2.0e-287 992.6 969 57.9
Haze_18548 Corylus avellana HOM05D005717 ORTHO05D007221 2.0e-287 992.6 1045 54.4
Nitab4.5_0000646g0340 Nicotiana tabacum HOM05D005717 ORTHO05D007221 2.0e-287 992.6 987 56.4
MSTRG.9576 Avicennia marina HOM05D005717 ORTHO05D007221 5.8e-287 991.1 989 56.9
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 7.5e-287 990.7 973 55.9
Actinidia24269 Actinidia chinensis HOM05D005717 ORTHO05D007221 2.9e-286 988.8 986 56.8
Peaxi162Scf00017g03258 Petunia axillaris HOM05D005717 ORTHO05D007221 2.9e-286 988.8 991 55.4
Cc04_g08130 Coffea canephora HOM05D005717 ORTHO05D007221 2.4e-285 985.7 980 56.5
Sc04g0003990 Simmondsia chinensis HOM05D005717 ORTHO05D007221 3.5e-284 981.9 998 55.9
vmacro16471 Vaccinium macrocarpon HOM05D005717 ORTHO05D007221 3.9e-283 978.4 997 56.3
arahy.Tifrunner.gnm1.ann1.06HQ5Q Arachis hypogaea HOM05D005717 ORTHO05D007221 1.5e-282 976.5 966 56.0
Lalb_Chr08g0235411 Lupinus albus HOM05D005717 ORTHO05D007221 6.2e-281 971.1 924 58.9
SGA_v2.0_scaffold42G16051 Striga asiatica HOM05D005717 ORTHO05D007221 6.2e-281 971.1 983 57.5
CDE01G0371 Ceratophyllum demersum HOM05D005717 ORTHO05D007221 8.1e-281 970.7 973 56.0
Migut.D01493 Erythranthe guttata HOM05D005717 ORTHO05D007221 3.1e-280 968.8 986 56.0
MBI15_g42003_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 2.6e-279 965.7 982 56.4
Dinv36820 Davidia involucrata HOM05D005717 ORTHO05D007221 7.5e-279 964.1 985 57.7
Hund09972 Selenicereus undatus HOM05D005717 ORTHO05D007221 1.7e-278 963.0 1006 56.6
CANSAT80G2305 Cannabis sativa HOM05D005717 ORTHO05D007221 2.2e-278 962.6 974 57.1
Lsat_1_v5_gn_4_112460 Lactuca sativa HOM05D005717 ORTHO05D007221 1.4e-277 959.9 991 53.5
MD14G1217300 Malus domestica HOM05D005717 ORTHO05D007221 3.2e-277 958.7 974 58.4
Lj1g0015597 Lotus japonicus HOM05D005717 ORTHO05D007221 4.1e-277 958.4 961 54.8
Ah.11g047340 Amaranthus hybridus HOM05D005717 ORTHO05D007221 2.7e-276 955.7 978 57.1
TWI60G0681 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 6.6e-275 951.0 903 58.4
EL10Ac5g11198 Beta vulgaris HOM05D005717 ORTHO05D007221 8.6e-275 950.7 1016 55.6
AUR62032150 Chenopodium quinoa HOM05D005717 ORTHO05D007221 1.1e-274 950.3 1007 55.5
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 1.6e-273 946.4 987 53.2
SalBow1G6140 Salvia bowleyana HOM05D005717 ORTHO05D007221 4.7e-273 944.9 1022 54.0
AUR62039684 Chenopodium quinoa HOM05D005717 ORTHO05D007221 6.2e-273 944.5 1023 55.1
TWI81G0191 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 1.4e-269 933.3 964 55.4
Sopen03g033760 Solanum pennellii HOM05D005717 ORTHO05D007221 1.9e-269 932.9 987 53.6
HanXRQChr16g0501941 Helianthus annuus HOM05D005717 ORTHO05D007221 4.1e-269 931.8 1012 54.2
Thecc.03G110500 Theobroma cacao HOM05D005717 ORTHO05D007221 9.2e-269 930.6 962 55.7
Duzib205G0984 Durio zibethinus HOM05D005717 ORTHO05D007221 7.8e-268 927.5 961 55.6
Potri.012G065200 Populus trichocarpa HOM05D005717 ORTHO05D007221 7.8e-268 927.5 979 54.4
Oeu031929.1 Olea europaea HOM05D005717 ORTHO05D007221 9.6e-266 920.6 972 52.3
Gorai.003G103900 Gossypium raimondii HOM05D005717 ORTHO05D007221 8.1e-265 917.5 990 54.0
MD06G1206600 Malus domestica HOM05D005717 ORTHO05D007221 3.1e-264 915.6 971 56.7
PGR044G0409 Punica granatum HOM05D005717 ORTHO05D007221 5.2e-264 914.8 979 53.2
CiPaw.16G080600 Carya illinoinensis HOM05D005717 ORTHO05D007221 1.5e-263 913.3 906 56.8
Ca_26377_v3 Cicer arietinum L. HOM05D005717 ORTHO05D007221 1.5e-263 913.3 957 54.0
Gohir.A03G072200 Gossypium hirsutum HOM05D005717 ORTHO05D007221 1.5e-263 913.3 971 54.6
DCAR_014013 Daucus carota HOM05D005717 ORTHO05D007221 4.4e-263 911.8 1033 53.5
PGSC0003DMG400024615 Solanum tuberosum HOM05D005717 ORTHO05D007221 4.9e-262 908.3 1006 52.4
Gohir.D03G099000 Gossypium hirsutum HOM05D005717 ORTHO05D007221 1.1e-261 907.1 958 55.2
Duzib068G1379 Durio zibethinus HOM05D005717 ORTHO05D007221 4.2e-261 905.2 957 55.0
Manes.06G080000 Manihot esculenta HOM05D005717 ORTHO05D007221 7.1e-261 904.4 963 54.8
RcHm_v2.0_Chr7g0183891 Rosa chinensis HOM05D005717 ORTHO05D007221 1.2e-260 903.7 977 53.2
FvH4_5g13280 Fragaria vesca HOM05D005717 ORTHO05D007221 1.6e-260 903.3 972 53.5
TPR.G15323 Trifolium pratense HOM05D005717 ORTHO05D007221 1.6e-260 903.3 969 53.4
FAN13G2659 Fragaria x ananassa HOM05D005717 ORTHO05D007221 1.1e-258 897.1 962 53.8
unitig_578.g15938 Utricularia gibba HOM05D005717 ORTHO05D007221 7.3e-258 894.4 974 53.6
Eucgr.K02631 Eucalyptus grandis HOM05D005717 ORTHO05D007221 1.3e-257 893.6 972 52.2
FAN18G3426 Fragaria x ananassa HOM05D005717 ORTHO05D007221 1.3e-257 893.6 971 53.0
FAN08G0926 Fragaria x ananassa HOM05D005717 ORTHO05D007221 2.1e-257 892.9 971 53.0
Psat1g029000 Pisum sativum HOM05D005717 ORTHO05D007221 3.6e-257 892.1 968 53.2
Medtr2g059200 Medicago truncatula HOM05D005717 ORTHO05D007221 3.1e-256 889.0 960 53.3
Dinv38628 Davidia involucrata HOM05D005717 ORTHO05D007221 6.9e-256 887.9 947 55.3
Prupe.5G211000 Prunus persica HOM05D005717 ORTHO05D007221 5.4e-253 878.2 968 54.4
VMungo1309G2787 Vigna mungo HOM05D005717 ORTHO05D007221 1.8e-251 873.2 965 52.1
Carub.0005s0880 Capsella rubella HOM05D005717 ORTHO05D007221 2.3e-251 872.8 972 51.7
Os09g0241100 Oryza sativa ssp. japonica HOM05D005717 ORTHO05D007221 4.9e-246 855.1 1005 49.8
Glyma.04G158400 Glycine max HOM05D005717 ORTHO05D007221 9.3e-245 850.9 975 52.3
Glyma.06G206800 Glycine max HOM05D005717 ORTHO05D007221 8.2e-241 837.8 971 50.7
Phvul.009G204400 Phaseolus vulgaris HOM05D005717 ORTHO05D007221 1.5e-239 833.6 971 50.6
Solyc03g114690.4 Solanum lycopersicum HOM05D005717 ORTHO05D007221 7.9e-236 821.2 875 54.3
ATR0691G143 Amborella trichopoda HOM05D005717 ORTHO05D007221 7.4e-234 814.7 899 54.5
AL5G20890 Arabidopsis lyrata HOM05D005717 ORTHO05D007221 9.7e-234 814.3 975 49.6
AT3G42660 Arabidopsis thaliana HOM05D005717 ORTHO05D007221 2.3e-227 793.1 978 49.8
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 2.8e-225 786.2 939 47.2
CARHR153710 Cardamine hirsuta HOM05D005717 ORTHO05D007221 3.4e-223 779.2 977 49.7
Thhalv10016196m.g Eutrema salsugineum HOM05D005717 ORTHO05D007221 5.9e-223 778.5 974 47.9
Aa31LG4G13310 Aethionema arabicum HOM05D005717 ORTHO05D007221 2.9e-222 776.2 841 53.3
Sp5g17930 Schrenkiella parvula HOM05D005717 ORTHO05D007221 3.8e-222 775.8 973 48.0
SpUn0079_0020 Schrenkiella parvula HOM05D005717 ORTHO05D007221 3.8e-222 775.8 973 48.0
THA.LOC104804979 Tarenaya hassleriana HOM05D005717 ORTHO05D007221 2.7e-220 769.6 966 48.1
BcaB01g01238 Brassica carinata HOM05D005717 ORTHO05D007221 7.9e-220 768.1 969 48.2
SEGI_19386 Sequoiadendron giganteum HOM05D005717 ORTHO05D007221 9.7e-218 761.1 985 47.1
Zm00001eb308160 Zea mays HOM05D005717 ORTHO05D007221 9.7e-218 761.1 769 56.4
BolC3t19078H Brassica oleracea HOM05D005717 ORTHO05D007221 4.8e-217 758.8 972 47.1
A06p22690 Brassica napus HOM05D005717 ORTHO05D007221 8.2e-217 758.1 973 47.4
C03p68460 Brassica napus HOM05D005717 ORTHO05D007221 1.1e-216 757.7 974 47.3
BraA06t25353Z Brassica rapa HOM05D005717 ORTHO05D007221 1.1e-216 757.7 973 47.0
BcaC01g02114 Brassica carinata HOM05D005717 ORTHO05D007221 2.4e-216 756.5 972 47.0
AagrBONN_evm.TU.Sc2ySwM_344.3979 Anthoceros agrestis HOM05D005717 ORTHO05D007221 8.9e-179 631.7 1003 41.2
SHI19002 Sapria himalayana HOM05D005717 ORTHO05D007221 8.4e-153 545.4 604 55.0
Mapoly0112s0022 Marchantia polymorpha HOM05D005717 ORTHO05D007221 2.1e-151 540.8 1003 37.2
SMO201G0059 Selaginella moellendorffii HOM05D005717 ORTHO05D007221 1.6e-140 504.6 823 39.2
HPP92_020490 Vanilla planifolia HOM05D005717 ORTHO05D007221 2.9e-137 493.8 503 56.1
Pp3c26_14490 Physcomitrium patens HOM05D005717 ORTHO05D007221 5.8e-130 469.5 681 42.1
HPP92_020489 Vanilla planifolia HOM05D005717 ORTHO05D007221 3.7e-124 450.3 496 50.6
CBR_g19153 Chara braunii HOM05D005717 ORTHO05D007221 9.0e-115 419.1 806 33.4
PRCOL_00001230 Prasinoderma coloniale HOM05D005717 ORTHO05D007221 7.0e-91 339.7 786 30.7
MCO04G151 Micromonas commoda HOM05D005717 ORTHO05D007221 2.9e-81 307.8 860 28.3
Cre16.g652950 Chlamydomonas reinhardtii HOM05D005717 ORTHO05D007221 5.9e-66 256.9 880 26.4
SHI19003 Sapria himalayana HOM05D005717 ORTHO05D007221 4.3e-64 250.8 378 43.4
Peaxi162Scf00417g01311 Petunia axillaris HOM05D005717 ORTHO05D007221 3.4e-53 214.5 459 35.7
Peaxi162Scf00417g01333 Petunia axillaris HOM05D005717 ORTHO05D007221 6.2e-47 193.7 172 58.7
Lsat_1_v5_gn_5_133280 Lactuca sativa HOM05D005717 ORTHO05D007221 2.0e-37 162.2 275 38.2
Lsat_1_v5_gn_4_132261 Lactuca sativa HOM05D005717 ORTHO05D007221 3.0e-33 148.3 263 36.1
Actinidia04785 Actinidia chinensis HOM05D005717 ORTHO05D007221 2.8e-23 115.2 67 76.1
Medtr8g432590 Medicago truncatula HOM05D005717 ORTHO05D007221 4.5e-21 107.8 80 62.5
BolC3t19074H Brassica oleracea HOM05D005717 ORTHO05D007221 5.8e-21 107.5 90 61.1
C03p68400 Brassica napus HOM05D005717 ORTHO05D007221 2.9e-20 105.1 90 60.0
BraA06t25356Z Brassica rapa HOM05D005717 ORTHO05D007221 3.9e-17 94.7 90 58.9
A06p22750 Brassica napus HOM05D005717 ORTHO05D007221 5.1e-17 94.4 90 58.9
Actinidia04786 Actinidia chinensis HOM05D005717 ORTHO05D007221 2.5e-16 92.0 365 29.3
Medtr2g090685 Medicago truncatula HOM05D005717 ORTHO05D007221 5.6e-16 90.9 66 63.6
Lsat_1_v5_gn_4_12100 Lactuca sativa HOM05D005717 ORTHO05D007221 9.3e-11 73.6 104 44.2
MBI16_g18971_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 1.8e-09 69.3 155 33.5
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 1.1e-06 60.1 37 70.3
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 1.8e-06 59.3 151 27.8


User provided reference genes

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