Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G4527 Papaver somniferum HOM05D001817 ORTHO05D001647 2.9e-78 295.0 139 100.0
Lalb_Chr07g0186901 Lupinus albus HOM05D001817 ORTHO05D001647 4.9e-17 91.7 119 42.0
Glyma.07G189600 Glycine max HOM05D001817 ORTHO05D001647 9.3e-16 87.4 115 38.3
Phvul.007G030200 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.7e-14 83.2 106 41.5
Phvul.007G030500 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.7e-14 83.2 107 42.1
Phvul.010G051700 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 2.3e-14 82.8 106 41.5
VMungo0331G0739 Vigna mungo HOM05D001817 ORTHO05D001647 3.0e-14 82.4 107 42.1
Haze_21486 Corylus avellana HOM05D001817 ORTHO05D001647 3.9e-14 82.0 119 36.1
Phvul.002G171300 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 3.9e-14 82.0 109 39.4
Lj3g0023162 Lotus japonicus HOM05D001817 ORTHO05D001647 8.7e-14 80.9 91 46.2
MD15G1128800 Malus domestica HOM05D001817 ORTHO05D001647 8.7e-14 80.9 117 38.5
Sc23g0006630 Simmondsia chinensis HOM05D001817 ORTHO05D001647 1.5e-13 80.1 111 40.5
Prupe.1G484100 Prunus persica HOM05D001817 ORTHO05D001647 5.6e-13 78.2 114 36.8
Glyma.09G085400 Glycine max HOM05D001817 ORTHO05D001647 7.3e-13 77.8 116 37.1
VMungo0720G3158 Vigna mungo HOM05D001817 ORTHO05D001647 7.3e-13 77.8 118 38.1
Ciclev10010457m.g Citrus clementina HOM05D001817 ORTHO05D001647 9.6e-13 77.4 91 40.7
FAN24G2789 Fragaria x ananassa HOM05D001817 ORTHO05D001647 9.6e-13 77.4 117 38.5
Glyma.13G199700 Glycine max HOM05D001817 ORTHO05D001647 9.6e-13 77.4 111 43.2
Potri.004G167900 Populus trichocarpa HOM05D001817 ORTHO05D001647 9.6e-13 77.4 118 37.3
Prupe.1G484000 Prunus persica HOM05D001817 ORTHO05D001647 1.3e-12 77.0 113 37.2
TAR629G2934 Trochodendron aralioides HOM05D001817 ORTHO05D001647 1.3e-12 77.0 119 37.8
Glyma.10G186200 Glycine max HOM05D001817 ORTHO05D001647 1.6e-12 76.6 120 38.3
Glyma.17G218100 Glycine max HOM05D001817 ORTHO05D001647 1.6e-12 76.6 116 36.2
Lalb_Chr13g0294691 Lupinus albus HOM05D001817 ORTHO05D001647 1.6e-12 76.6 118 39.8
Phvul.006G043500 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 2.1e-12 76.3 105 40.0
AUR62029426 Chenopodium quinoa HOM05D001817 ORTHO05D001647 2.8e-12 75.9 113 39.8
Lj4g0011737 Lotus japonicus HOM05D001817 ORTHO05D001647 2.8e-12 75.9 111 38.7
Glyma.10G113700 Glycine max HOM05D001817 ORTHO05D001647 4.8e-12 75.1 120 36.7
EL10Ac6g15442 Beta vulgaris HOM05D001817 ORTHO05D001647 6.2e-12 74.7 104 41.3
FvH4_2g28690 Fragaria vesca HOM05D001817 ORTHO05D001647 6.2e-12 74.7 112 40.2
Glyma.10G114100 Glycine max HOM05D001817 ORTHO05D001647 6.2e-12 74.7 120 36.7
TPR.G19813 Trifolium pratense HOM05D001817 ORTHO05D001647 6.2e-12 74.7 116 32.8
TAR629G0897 Trochodendron aralioides HOM05D001817 ORTHO05D001647 8.1e-12 74.3 113 38.1
VMungo0331G0458 Vigna mungo HOM05D001817 ORTHO05D001647 1.1e-11 73.9 114 36.8
Atru.chr12.564 Acer truncatum HOM05D001817 ORTHO05D001647 1.4e-11 73.6 123 37.4
FAN27G2147 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.4e-11 73.6 120 38.3
FvH4_5g25410 Fragaria vesca HOM05D001817 ORTHO05D001647 1.8e-11 73.2 117 34.2
FAN18G2855 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.8e-11 73.2 117 34.2
Lj4g0020170 Lotus japonicus HOM05D001817 ORTHO05D001647 1.8e-11 73.2 109 39.4
Manes.02G218600 Manihot esculenta HOM05D001817 ORTHO05D001647 1.8e-11 73.2 122 37.7
Psat6g048880 Pisum sativum HOM05D001817 ORTHO05D001647 1.8e-11 73.2 107 40.2
Sabra09G0098900 Salix brachista HOM05D001817 ORTHO05D001647 1.8e-11 73.2 120 36.7
VMungo0464G0399 Vigna mungo HOM05D001817 ORTHO05D001647 1.8e-11 73.2 92 43.5
Glyma.08G357100 Glycine max HOM05D001817 ORTHO05D001647 2.4e-11 72.8 110 36.4
Lj4g0019656 Lotus japonicus HOM05D001817 ORTHO05D001647 2.4e-11 72.8 117 33.3
Potri.009G129400 Populus trichocarpa HOM05D001817 ORTHO05D001647 2.4e-11 72.8 120 37.5
VMungo0720G1259 Vigna mungo HOM05D001817 ORTHO05D001647 2.4e-11 72.8 120 36.7
Sed0012505 Sechium edule HOM05D001817 ORTHO05D001647 3.1e-11 72.4 125 32.0
FvH4_5g03660 Fragaria vesca HOM05D001817 ORTHO05D001647 5.3e-11 71.6 120 33.3
HanXRQChr16g0511881 Helianthus annuus HOM05D001817 ORTHO05D001647 5.3e-11 71.6 117 37.6
Lj4g0027202 Lotus japonicus HOM05D001817 ORTHO05D001647 5.3e-11 71.6 116 37.1
Lalb_Chr21g0316231 Lupinus albus HOM05D001817 ORTHO05D001647 5.3e-11 71.6 116 37.9
Psat1g016120 Pisum sativum HOM05D001817 ORTHO05D001647 5.3e-11 71.6 117 35.9
VMungo0720G0118 Vigna mungo HOM05D001817 ORTHO05D001647 5.3e-11 71.6 102 36.3
Dinv24980 Davidia involucrata HOM05D001817 ORTHO05D001647 6.9e-11 71.2 115 33.9
Glyma.10G271300 Glycine max HOM05D001817 ORTHO05D001647 6.9e-11 71.2 114 35.1
Lalb_Chr03g0036441 Lupinus albus HOM05D001817 ORTHO05D001647 1.2e-10 70.5 118 35.6
Lalb_Chr07g0186891 Lupinus albus HOM05D001817 ORTHO05D001647 1.2e-10 70.5 125 36.0
FAN24G1684 Fragaria x ananassa HOM05D001817 ORTHO05D001647 1.5e-10 70.1 103 40.8
VMungo0540G2413 Vigna mungo HOM05D001817 ORTHO05D001647 1.5e-10 70.1 107 39.3
Phvul.001G045800 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 2.0e-10 69.7 109 33.9
FAN04G2963 Fragaria x ananassa HOM05D001817 ORTHO05D001647 2.6e-10 69.3 120 32.5
FAN08G2754 Fragaria x ananassa HOM05D001817 ORTHO05D001647 2.6e-10 69.3 120 32.5
FAN18G1420 Fragaria x ananassa HOM05D001817 ORTHO05D001647 2.6e-10 69.3 120 32.5
HPP92_015931 Vanilla planifolia HOM05D001817 ORTHO05D001647 2.6e-10 69.3 93 39.8
CiPaw.08G009300 Carya illinoinensis HOM05D001817 ORTHO05D001647 3.4e-10 68.9 115 35.7
MBI07_g02004_MAGBIO Magnolia biondii HOM05D001817 ORTHO05D001647 3.4e-10 68.9 87 40.2
Phvul.007G239600 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 3.4e-10 68.9 115 35.7
Sc06g0000520 Simmondsia chinensis HOM05D001817 ORTHO05D001647 3.4e-10 68.9 107 36.4
arahy.Tifrunner.gnm1.ann1.J1V55D Arachis hypogaea HOM05D001817 ORTHO05D001647 4.4e-10 68.6 115 38.3
arahy.Tifrunner.gnm1.ann1.SUQM4P Arachis hypogaea HOM05D001817 ORTHO05D001647 4.4e-10 68.6 115 38.3
RcHm_v2.0_Chr6g0297461 Rosa chinensis HOM05D001817 ORTHO05D001647 4.4e-10 68.6 112 37.5
COL.COLO4_18892 Corchorus olitorius HOM05D001817 ORTHO05D001647 5.8e-10 68.2 116 34.5
HanXRQChr13g0400031 Helianthus annuus HOM05D001817 ORTHO05D001647 5.8e-10 68.2 117 34.2
Lsat_1_v5_gn_6_115781 Lactuca sativa HOM05D001817 ORTHO05D001647 5.8e-10 68.2 109 35.8
MBI18_g29804_MAGBIO Magnolia biondii HOM05D001817 ORTHO05D001647 5.8e-10 68.2 93 38.7
Os02g0511600 Oryza sativa ssp. japonica HOM05D001817 ORTHO05D001647 5.8e-10 68.2 94 39.4
VMungo0464G1322 Vigna mungo HOM05D001817 ORTHO05D001647 5.8e-10 68.2 90 41.1
Zm00001eb421200 Zea mays HOM05D001817 ORTHO05D001647 7.6e-10 67.8 89 41.6
FAN04G1340 Fragaria x ananassa HOM05D001817 ORTHO05D001647 9.9e-10 67.4 120 31.7
Lalb_Chr12g0205711 Lupinus albus HOM05D001817 ORTHO05D001647 9.9e-10 67.4 119 36.1
TPR.G3595 Trifolium pratense HOM05D001817 ORTHO05D001647 9.9e-10 67.4 113 34.5
Atru.chr6.250 Acer truncatum HOM05D001817 ORTHO05D001647 1.3e-09 67.0 119 34.5
Lalb_Chr13g0294721 Lupinus albus HOM05D001817 ORTHO05D001647 1.3e-09 67.0 119 38.7
CsaV3_3G046170 Cucumis sativus L. HOM05D001817 ORTHO05D001647 1.7e-09 66.6 115 35.7
Sc03g0006290 Simmondsia chinensis HOM05D001817 ORTHO05D001647 1.7e-09 66.6 113 35.4
Phvul.004G057100 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 2.2e-09 66.2 120 34.2
TWI63G1514 Tripterygium wilfordii HOM05D001817 ORTHO05D001647 2.2e-09 66.2 112 33.0
arahy.Tifrunner.gnm1.ann1.H9XFHY Arachis hypogaea HOM05D001817 ORTHO05D001647 2.9e-09 65.9 107 35.5
MBI07_g02003_MAGBIO Magnolia biondii HOM05D001817 ORTHO05D001647 2.9e-09 65.9 93 35.5
TAR622G1058 Trochodendron aralioides HOM05D001817 ORTHO05D001647 2.9e-09 65.9 118 33.9
CANSAT25G3871 Cannabis sativa HOM05D001817 ORTHO05D001647 3.8e-09 65.5 111 36.0
FAN27G0609 Fragaria x ananassa HOM05D001817 ORTHO05D001647 3.8e-09 65.5 92 38.0
HPP92_021712 Vanilla planifolia HOM05D001817 ORTHO05D001647 3.8e-09 65.5 115 36.5
MELO3C003721.2 Cucumis melo HOM05D001817 ORTHO05D001647 4.9e-09 65.1 114 32.5
Lsat_1_v5_gn_6_115761 Lactuca sativa HOM05D001817 ORTHO05D001647 4.9e-09 65.1 102 34.3
Hund04268 Selenicereus undatus HOM05D008125 ORTHO05D010359 4.9e-09 65.1 105 39.0
TAR622G0422 Trochodendron aralioides HOM05D001817 ORTHO05D001647 4.9e-09 65.1 91 35.2
arahy.Tifrunner.gnm1.ann1.QWA25E Arachis hypogaea HOM05D001817 ORTHO05D001647 6.4e-09 64.7 107 36.4
HPP92_021690 Vanilla planifolia HOM05D001817 ORTHO05D001647 6.4e-09 64.7 115 36.5
HPP92_021691 Vanilla planifolia HOM05D001817 ORTHO05D001647 6.4e-09 64.7 88 36.4
arahy.Tifrunner.gnm1.ann1.8W5KIC Arachis hypogaea HOM05D001817 ORTHO05D001647 8.4e-09 64.3 110 33.6
Duzib150G1023 Durio zibethinus HOM05D001817 ORTHO05D001647 8.4e-09 64.3 119 36.1
FAN15G2483 Fragaria x ananassa HOM05D000140 ORTHO05D000087 8.4e-09 64.3 110 30.0
Prupe.1G484200 Prunus persica HOM05D001817 ORTHO05D001647 8.4e-09 64.3 116 34.5
THA.LOC104818605 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 8.4e-09 64.3 108 31.5
THA.LOC104818607 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 8.4e-09 64.3 108 31.5
THA.LOC104818611 Tarenaya hassleriana HOM05D001817 ORTHO05D001647 8.4e-09 64.3 108 31.5
Medtr2g063010 Medicago truncatula HOM05D001817 ORTHO05D001647 1.1e-08 63.9 114 36.8
HPP92_021711 Vanilla planifolia HOM05D001817 ORTHO05D001647 1.1e-08 63.9 88 36.4
FAN24G1722 Fragaria x ananassa HOM05D000140 ORTHO05D000087 1.4e-08 63.5 110 30.0
PGR044G0606 Punica granatum HOM05D001817 ORTHO05D001647 1.4e-08 63.5 118 33.9
Carub.0007s0847 Capsella rubella HOM05D001817 ORTHO05D001647 1.9e-08 63.2 110 31.8
QL02p021022 Quercus lobata HOM05D001817 ORTHO05D001647 1.9e-08 63.2 109 33.0
Atru.chr7.2474 Acer truncatum HOM05D001817 ORTHO05D001647 2.4e-08 62.8 111 34.2
Actinidia22324 Actinidia chinensis HOM05D001817 ORTHO05D001647 2.4e-08 62.8 90 37.8
ClCG05G016680 Citrullus lanatus HOM05D001817 ORTHO05D001647 2.4e-08 62.8 113 35.4
Sc03g0006280 Simmondsia chinensis HOM05D001817 ORTHO05D001647 2.4e-08 62.8 90 35.6
Sopen10g024540 Solanum pennellii HOM05D001817 ORTHO05D001647 2.4e-08 62.8 122 35.2
FvH4_2g27480 Fragaria vesca HOM05D001817 ORTHO05D001647 3.2e-08 62.4 107 29.9
FvH4_2g28680 Fragaria vesca HOM05D001817 ORTHO05D001647 3.2e-08 62.4 120 34.2
Glyma.10G113900 Glycine max HOM05D001817 ORTHO05D001647 3.2e-08 62.4 93 39.8
Rhsim04G0092100 Rhododendron simsii HOM05D001817 ORTHO05D001647 3.2e-08 62.4 101 38.6
Sed0003642 Sechium edule HOM05D001817 ORTHO05D001647 3.2e-08 62.4 115 32.2
arahy.Tifrunner.gnm1.ann1.62PV47 Arachis hypogaea HOM05D001817 ORTHO05D001647 4.2e-08 62.0 108 32.4
Atru.chr7.2473 Acer truncatum HOM05D001817 ORTHO05D001647 5.4e-08 61.6 119 34.5
Glyma.05G150900 Glycine max HOM05D001817 ORTHO05D001647 5.4e-08 61.6 116 34.5
PSO675G1843 Papaver somniferum HOM05D001817 ORTHO05D001647 5.4e-08 61.6 87 37.9
Phvul.009G216600 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 5.4e-08 61.6 111 32.4
Sp7g29890 Schrenkiella parvula HOM05D001817 ORTHO05D001647 9.3e-08 60.8 99 39.4
ATR0582G117 Amborella trichopoda HOM05D001817 ORTHO05D001647 1.6e-07 60.1 89 32.6
FAN20G0384 Fragaria x ananassa HOM05D000140 ORTHO05D000087 2.7e-07 59.3 109 28.4
FAN27G3307 Fragaria x ananassa HOM05D000140 ORTHO05D000087 2.7e-07 59.3 115 29.6
Eucgr.C02739 Eucalyptus grandis HOM05D001817 ORTHO05D001647 3.5e-07 58.9 109 34.9
PGSC0003DMG400004421 Solanum tuberosum HOM05D001817 ORTHO05D001647 4.6e-07 58.5 127 33.1
AL7G19790 Arabidopsis lyrata HOM05D001817 ORTHO05D001647 6.0e-07 58.2 112 32.1
Carub.0007s0846 Capsella rubella HOM05D001817 ORTHO05D001647 6.0e-07 58.2 110 32.7
Lj5g0009014 Lotus japonicus HOM05D001817 ORTHO05D001647 6.0e-07 58.2 111 33.3
A01p06210 Brassica napus HOM05D001817 ORTHO05D001647 7.9e-07 57.8 110 32.7
A01p06720 Brassica napus HOM05D001817 ORTHO05D001647 7.9e-07 57.8 81 37.0
C01p07480 Brassica napus HOM05D001817 ORTHO05D001647 7.9e-07 57.8 81 37.0
BolC1t00731H Brassica oleracea HOM05D001817 ORTHO05D001647 7.9e-07 57.8 81 37.0
CARHR239990 Cardamine hirsuta HOM05D001817 ORTHO05D001647 7.9e-07 57.8 81 37.0
Lalb_Chr13g0294711 Lupinus albus HOM05D001817 ORTHO05D001647 7.9e-07 57.8 71 42.3
Zm00001eb085230 Zea mays HOM05D001817 ORTHO05D001647 7.9e-07 57.8 90 37.8
arahy.Tifrunner.gnm1.ann1.G1WXPY Arachis hypogaea HOM05D001817 ORTHO05D001647 1.0e-06 57.4 108 30.6
Phvul.009G216700 Phaseolus vulgaris HOM05D001817 ORTHO05D001647 1.0e-06 57.4 115 33.0
TWI34G0812 Tripterygium wilfordii HOM05D001817 ORTHO05D001647 1.3e-06 57.0 116 32.8
TWI63G0410 Tripterygium wilfordii HOM05D001817 ORTHO05D001647 1.3e-06 57.0 137 29.9
arahy.Tifrunner.gnm1.ann1.XI4PYL Arachis hypogaea HOM05D001817 ORTHO05D001647 3.0e-06 55.8 120 29.2
BcaNung03137 Brassica carinata HOM05D001817 ORTHO05D001647 3.0e-06 55.8 81 34.6
Phvul.002G284300 Phaseolus vulgaris HOM05D001648 ORTHO05D001657 3.0e-06 55.8 92 33.7
arahy.Tifrunner.gnm1.ann1.27HQCZ Arachis hypogaea HOM05D001817 ORTHO05D001647 6.6e-06 54.7 113 29.2
C07p59090 Brassica napus HOM05D001817 ORTHO05D001647 6.6e-06 54.7 82 36.6
BolC7t46357H Brassica oleracea HOM05D001817 ORTHO05D001647 6.6e-06 54.7 82 36.6
Thhalv10026845m.g Eutrema salsugineum HOM05D001817 ORTHO05D001647 6.6e-06 54.7 81 35.8
arahy.Tifrunner.gnm1.ann1.DUNV2U Arachis hypogaea HOM05D001817 ORTHO05D001647 8.7e-06 54.3 116 27.6


User provided reference genes

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