Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 2.7e-142 508.8 293 100.0
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 1.0e-101 374.0 240 85.8
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 1.4e-85 320.5 209 82.3
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 4.6e-81 305.4 291 56.0
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 1.4e-77 293.9 291 55.0
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 1.2e-76 290.8 252 57.9
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 1.5e-76 290.4 253 59.7
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 1.3e-75 287.3 291 52.6
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.9e-74 283.5 253 56.5
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 1.9e-74 283.5 291 52.6
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 2.7e-73 279.6 306 49.3
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 7.8e-73 278.1 253 56.1
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 1.7e-72 276.9 291 51.9
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 2.3e-72 276.6 291 50.9
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 3.0e-72 276.2 291 49.8
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 3.0e-72 276.2 241 59.8
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 6.6e-72 275.0 265 55.1
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 8.6e-72 274.6 291 52.2
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 2.5e-71 273.1 303 49.8
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 3.3e-71 272.7 260 54.2
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 3.6e-70 269.2 291 49.8
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 1.4e-69 267.3 260 53.8
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 6.8e-69 265.0 291 48.8
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 3.4e-68 262.7 269 51.3
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 5.8e-68 261.9 291 49.8
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 7.5e-68 261.5 297 47.1
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 9.9e-68 261.2 291 49.5
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 9.9e-68 261.2 213 59.6
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.3e-67 260.8 291 49.1
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 2.9e-67 259.6 292 47.6
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 3.7e-67 259.2 270 48.5
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 4.9e-67 258.8 214 59.8
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 8.3e-67 258.1 286 49.3
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 8.3e-67 258.1 286 49.0
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 1.1e-66 257.7 284 49.3
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 1.1e-66 257.7 281 49.8
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 2.4e-66 256.5 297 46.1
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 2.4e-66 256.5 213 60.6
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 3.2e-66 256.1 269 50.9
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 3.2e-66 256.1 213 63.4
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 4.1e-66 255.8 291 47.4
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 4.1e-66 255.8 270 48.1
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 9.2e-66 254.6 220 57.7
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 1.2e-65 254.2 289 47.4
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 2.7e-65 253.1 292 44.9
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 6.0e-65 251.9 280 47.1
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 6.0e-65 251.9 252 52.0
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 7.8e-65 251.5 278 49.6
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 7.8e-65 251.5 213 58.7
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 7.8e-65 251.5 291 47.4
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 1.3e-64 250.8 238 54.6
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.7e-64 250.4 213 59.6
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 2.3e-64 250.0 278 49.3
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 2.3e-64 250.0 293 45.7
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 3.9e-64 249.2 291 46.7
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 5.1e-64 248.8 284 47.9
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 5.1e-64 248.8 282 48.2
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 5.1e-64 248.8 294 45.9
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 6.6e-64 248.4 213 57.7
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 8.6e-64 248.1 291 47.8
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.1e-63 247.7 252 49.6
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 1.5e-63 247.3 265 49.4
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.9e-63 246.9 213 58.7
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 1.9e-63 246.9 284 47.5
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 9.5e-63 244.6 264 48.5
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 4.7e-62 242.3 213 58.2
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 2.0e-60 236.9 317 42.3
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 2.6e-60 236.5 181 63.5
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 4.9e-59 232.3 208 56.2
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 4.9e-59 232.3 425 36.7
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 6.4e-59 231.9 206 54.4
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 8.4e-59 231.5 293 43.3
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 8.4e-59 231.5 213 55.9
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 1.1e-58 231.1 213 55.9
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 3.2e-58 229.6 292 45.2
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 7.1e-58 228.4 282 42.6
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 9.2e-58 228.0 280 45.7
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 2.1e-57 226.9 298 42.3
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 3.5e-57 226.1 271 48.3
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 4.6e-57 225.7 193 57.5
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 1.3e-56 224.2 213 49.8
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 1.3e-56 224.2 213 49.8
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 1.7e-56 223.8 213 53.5
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 1.7e-56 223.8 213 54.5
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 3.9e-56 222.6 208 53.4
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 5.1e-56 222.2 210 52.4
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 6.6e-56 221.9 208 53.8
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 8.7e-56 221.5 208 53.8
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 1.9e-55 220.3 213 52.6
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 1.9e-55 220.3 208 52.9
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 2.5e-55 219.9 347 38.0
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 2.5e-55 219.9 209 53.6
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 2.5e-55 219.9 236 47.9
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 3.3e-55 219.5 213 52.1
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 3.3e-55 219.5 213 52.6
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 1.6e-54 217.2 223 50.2
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 3.6e-54 216.1 208 52.4
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 3.6e-54 216.1 174 62.1
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 8.1e-54 214.9 263 44.1
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 2.4e-53 213.4 210 50.5
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 4.0e-53 212.6 255 45.9
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.2e-52 211.1 294 41.5
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 5.8e-52 208.8 232 48.3
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 7.6e-52 208.4 174 60.9
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.9e-51 206.5 260 44.2
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 4.9e-51 205.7 210 50.5
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.1e-50 204.5 281 42.0
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.1e-50 204.5 208 51.9
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 1.4e-50 204.1 260 43.8
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 3.2e-50 203.0 182 52.2
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 4.2e-50 202.6 283 41.3
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 9.3e-50 201.4 231 46.8
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 8.1e-46 188.3 209 48.3
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 2.4e-45 186.8 213 48.4
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 3.8e-43 179.5 236 44.9
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.4e-42 177.6 140 62.1
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 7.1e-42 175.3 215 48.8
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 7.1e-42 175.3 206 44.7
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 2.5e-39 166.8 223 43.5
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.4e-36 156.4 209 44.0
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.9e-34 150.6 124 56.5
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.2e-33 147.9 181 45.9
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.6e-33 147.5 208 41.8
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 8.7e-32 141.7 104 60.6
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.1e-26 124.8 161 43.5
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.4e-26 124.4 150 48.0
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 2.1e-25 120.6 210 33.3
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 2.1e-25 120.6 354 29.7
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 4.6e-25 119.4 176 38.1
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 1.8e-24 117.5 164 42.1
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 1.5e-23 114.4 204 33.3
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 3.3e-23 113.2 86 65.1
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 3.3e-23 113.2 163 39.3
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 3.7e-22 109.8 198 39.4
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 8.2e-22 108.6 189 37.6
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 5.3e-21 105.9 99 50.5
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 6.9e-21 105.5 212 34.0
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.0e-19 101.7 132 41.7
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 5.0e-19 99.4 175 32.6
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 6.7e-16 89.0 65 64.6
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 3.3e-15 86.7 142 35.2
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 7.4e-15 85.5 77 53.2
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.3e-14 84.7 61 68.9
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 2.8e-14 83.6 207 30.4
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 3.1e-13 80.1 66 56.1
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 4.1e-13 79.7 223 31.4
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 2.0e-12 77.4 142 33.8
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 2.0e-12 77.4 142 33.8
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 4.5e-12 76.3 133 33.1
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 2.5e-10 70.5 61 52.5
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 7.2e-10 68.9 101 38.6
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 4.7e-09 66.2 113 38.1
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 3.9e-08 63.2 84 45.2
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 2.6e-07 60.5 102 39.2
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 2.6e-07 60.5 39 66.7
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 5.7e-07 59.3 70 48.6
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 2.2e-06 57.4 37 62.2


User provided reference genes

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