Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G2995 Papaver somniferum HOM05D007428 ORTHO05D009308 4.8e-51 204.1 99 100.0
PSO782G0783 Papaver somniferum HOM05D007428 ORTHO05D009308 1.1e-47 193.0 100 95.0
MBI11_g02029_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 2.0e-33 145.6 100 77.0
ATR0661G028 Amborella trichopoda HOM05D007428 ORTHO05D009308 5.9e-33 144.1 99 74.7
Nn1g01671 Nelumbo nucifera HOM05D007428 ORTHO05D009308 3.8e-32 141.4 100 74.0
Manes.02G017900 Manihot esculenta HOM05D007428 ORTHO05D009308 5.6e-31 137.5 94 74.5
TAR374G0673 Trochodendron aralioides HOM05D007428 ORTHO05D009308 9.5e-31 136.7 100 72.0
Dinv38899 Davidia involucrata HOM05D007428 ORTHO05D009308 3.0e-29 131.7 96 70.8
GSVIVG01019416001 Vitis vinifera HOM05D007428 ORTHO05D009308 4.0e-29 131.3 96 69.8
Actinidia10608 Actinidia chinensis HOM05D007428 ORTHO05D009308 5.2e-29 131.0 94 71.3
CANSAT21G2180 Cannabis sativa HOM05D007428 ORTHO05D009308 5.2e-29 131.0 102 69.6
Ciclev10023047m.g Citrus clementina HOM05D007428 ORTHO05D009308 6.8e-29 130.6 96 69.8
Potri.001G099200 Populus trichocarpa HOM05D007428 ORTHO05D009308 1.5e-28 129.4 94 70.2
Prupe.5G106400 Prunus persica HOM05D007428 ORTHO05D009308 3.4e-28 128.3 99 67.7
Aqoxy7G00179 Aquilegia oxysepala HOM05D007428 ORTHO05D009308 4.4e-28 127.9 97 67.0
TAR375G0610 Trochodendron aralioides HOM05D007428 ORTHO05D009308 4.4e-28 127.9 92 70.7
FAN04G2816 Fragaria x ananassa HOM05D007428 ORTHO05D009308 5.7e-28 127.5 99 68.7
FAN13G2357 Fragaria x ananassa HOM05D007428 ORTHO05D009308 5.7e-28 127.5 99 68.7
FAN18G4254 Fragaria x ananassa HOM05D007428 ORTHO05D009308 5.7e-28 127.5 99 68.7
CiPaw.11G129900 Carya illinoinensis HOM05D007428 ORTHO05D009308 7.5e-28 127.1 94 70.2
Peaxi162Scf00102g01635 Petunia axillaris HOM05D007428 ORTHO05D009308 7.5e-28 127.1 91 70.3
Sabra01G0074400 Salix brachista HOM05D007428 ORTHO05D009308 9.8e-28 126.7 91 71.4
Atru.chr9.2117 Acer truncatum HOM05D007428 ORTHO05D009308 1.3e-27 126.3 94 70.2
RcHm_v2.0_Chr7g0196601 Rosa chinensis HOM05D007428 ORTHO05D009308 3.7e-27 124.8 99 67.7
AUR62000169 Chenopodium quinoa HOM05D007428 ORTHO05D009308 8.3e-27 123.6 94 67.0
PGR031G0112 Punica granatum HOM05D007428 ORTHO05D009308 8.3e-27 123.6 94 67.0
AUR62039842 Chenopodium quinoa HOM05D007428 ORTHO05D009308 1.8e-26 122.5 94 66.0
THA.LOC104809367 Tarenaya hassleriana HOM05D007428 ORTHO05D009308 2.4e-26 122.1 98 65.3
BcaB06g27627 Brassica carinata HOM05D007428 ORTHO05D009308 7.0e-26 120.6 94 66.0
CDE04G2716 Ceratophyllum demersum HOM05D007428 ORTHO05D009308 7.0e-26 120.6 94 70.2
Nn6g32110 Nelumbo nucifera HOM05D007428 ORTHO05D009308 9.2e-26 120.2 81 79.0
PGSC0003DMG400005826 Solanum tuberosum HOM05D007428 ORTHO05D009308 9.2e-26 120.2 88 70.5
Aa31LG9G500 Aethionema arabicum HOM05D007428 ORTHO05D009308 1.2e-25 119.8 98 65.3
Cfa012244 Carpinus fangiana HOM05D007428 ORTHO05D009308 1.6e-25 119.4 95 67.4
SEGI_01808 Sequoiadendron giganteum HOM05D007428 ORTHO05D009308 1.6e-25 119.4 88 68.2
BcaC02g08952 Brassica carinata HOM05D007428 ORTHO05D009308 2.0e-25 119.0 97 63.9
C04p48540 Brassica napus HOM05D007428 ORTHO05D009308 2.0e-25 119.0 97 63.9
BolC4t26447H Brassica oleracea HOM05D007428 ORTHO05D009308 2.0e-25 119.0 97 63.9
Gohir.D03G078400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 2.0e-25 119.0 94 67.0
Gorai.003G085700 Gossypium raimondii HOM05D007428 ORTHO05D009308 2.0e-25 119.0 94 67.0
HPP92_001758 Vanilla planifolia HOM05D007428 ORTHO05D009308 2.0e-25 119.0 96 64.6
EL10Ac4g10178 Beta vulgaris HOM05D007428 ORTHO05D009308 2.7e-25 118.6 94 66.0
Duzib084G1020 Durio zibethinus HOM05D007428 ORTHO05D009308 2.7e-25 118.6 94 66.0
Solyc08g008120.4 Solanum lycopersicum HOM05D007428 ORTHO05D009308 3.5e-25 118.2 88 69.3
Sopen08g003980 Solanum pennellii HOM05D007428 ORTHO05D009308 3.5e-25 118.2 88 69.3
A04p14670 Brassica napus HOM05D007428 ORTHO05D009308 4.6e-25 117.9 94 64.9
BraA04t17107Z Brassica rapa HOM05D007428 ORTHO05D009308 4.6e-25 117.9 94 64.9
CSS0042206 Camellia sinensis var. sinensis HOM05D007428 ORTHO05D009308 7.8e-25 117.1 96 64.6
ECA246G0502 Erigeron canadensis HOM05D007428 ORTHO05D009308 7.8e-25 117.1 92 65.2
Lsat_1_v5_gn_3_8800 Lactuca sativa HOM05D007428 ORTHO05D009308 7.8e-25 117.1 86 68.6
Phvul.001G130100 Phaseolus vulgaris HOM05D007428 ORTHO05D009308 7.8e-25 117.1 94 64.9
Rhsim02G0235600 Rhododendron simsii HOM05D007428 ORTHO05D009308 7.8e-25 117.1 144 47.9
Duzib205G1701 Durio zibethinus HOM05D007428 ORTHO05D009308 1.3e-24 116.3 94 64.9
Thhalv10028001m.g Eutrema salsugineum HOM05D007428 ORTHO05D009308 1.3e-24 116.3 94 64.9
MD06G1090900 Malus domestica HOM05D007428 ORTHO05D009308 1.3e-24 116.3 99 63.6
Gohir.D08G134500 Gossypium hirsutum HOM05D001458 ORTHO05D008462 1.7e-24 115.9 91 67.0
Lalb_Chr25g0287261 Lupinus albus HOM05D007428 ORTHO05D009308 1.7e-24 115.9 91 67.0
ClCG01G002350 Citrullus lanatus HOM05D007428 ORTHO05D009308 3.0e-24 115.2 100 61.0
Sp7g00480 Schrenkiella parvula HOM05D007428 ORTHO05D009308 3.9e-24 114.8 98 62.2
arahy.Tifrunner.gnm1.ann1.I9CJRL Arachis hypogaea HOM05D007428 ORTHO05D009308 5.0e-24 114.4 91 67.0
MELO3C005713.2 Cucumis melo HOM05D007428 ORTHO05D009308 5.0e-24 114.4 100 61.0
CsaV3_5G002410 Cucumis sativus L. HOM05D007428 ORTHO05D009308 5.0e-24 114.4 100 61.0
Eucgr.D01813 Eucalyptus grandis HOM05D007428 ORTHO05D009308 6.6e-24 114.0 93 64.5
CiPaw.12G089300 Carya illinoinensis HOM05D007428 ORTHO05D009308 8.6e-24 113.6 96 63.5
Medtr7g091260 Medicago truncatula HOM05D007428 ORTHO05D009308 8.6e-24 113.6 91 67.0
Gohir.A08G114300 Gossypium hirsutum HOM05D007428 ORTHO05D009308 1.9e-23 112.5 91 64.8
Carub.0007s3391 Capsella rubella HOM05D007428 ORTHO05D009308 2.5e-23 112.1 98 60.2
Glyma.19G137300 Glycine max HOM05D007428 ORTHO05D009308 2.5e-23 112.1 94 61.7
TPR.G18241 Trifolium pratense HOM05D007428 ORTHO05D009308 2.5e-23 112.1 91 64.8
CARHR287610 Cardamine hirsuta HOM05D007428 ORTHO05D009308 3.3e-23 111.7 98 60.2
Glyma.03G134700 Glycine max HOM05D007428 ORTHO05D009308 3.3e-23 111.7 98 62.2
AT5G41560 Arabidopsis thaliana HOM05D007428 ORTHO05D009308 9.5e-23 110.2 98 60.2
DCAR_005573 Daucus carota HOM05D007428 ORTHO05D009308 9.5e-23 110.2 93 63.4
AL7G47840 Arabidopsis lyrata HOM05D007428 ORTHO05D009308 2.1e-22 109.0 98 59.2
Zm00001eb001890 Zea mays HOM05D007428 ORTHO05D009308 2.1e-22 109.0 97 63.9
QL12p031804 Quercus lobata HOM05D007428 ORTHO05D009308 2.8e-22 108.6 133 48.1
Lj1g0002351 Lotus japonicus HOM05D007428 ORTHO05D009308 3.6e-22 108.2 86 62.8
arahy.Tifrunner.gnm1.ann1.LGCW4P Arachis hypogaea HOM05D007428 ORTHO05D009308 1.8e-21 105.9 102 59.8
Sed0012859 Sechium edule HOM05D007428 ORTHO05D009308 5.2e-21 104.4 100 57.0
Zm00001eb403670 Zea mays HOM05D007428 ORTHO05D009308 2.0e-20 102.4 99 61.6
Cc08_g15240 Coffea canephora HOM05D007428 ORTHO05D009308 7.5e-20 100.5 97 56.7
SMO117G0109 Selaginella moellendorffii HOM05D007428 ORTHO05D009308 7.5e-20 100.5 85 63.5
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 1.3e-19 99.8 97 57.7
Hma1.2p1_0216F.1_g091060 Hydrangea macrophylla HOM05D007428 ORTHO05D009308 1.7e-19 99.4 97 60.8
Os03g0125700 Oryza sativa ssp. japonica HOM05D007428 ORTHO05D009308 4.1e-18 94.7 96 55.2
HPP92_003464 Vanilla planifolia HOM05D007428 ORTHO05D009308 4.1e-18 94.7 67 71.6
SGA_v2.0_scaffold111G31471 Striga asiatica HOM05D007428 ORTHO05D009308 7.0e-18 94.0 86 58.1
Ah.06g194380 Amaranthus hybridus HOM05D007428 ORTHO05D009308 2.7e-17 92.0 159 38.4
Duzib068G1017 Durio zibethinus HOM05D007428 ORTHO05D009308 2.7e-17 92.0 71 67.6
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.0e-16 90.1 72 66.7
COL.COLO4_08363 Corchorus olitorius HOM05D007428 ORTHO05D009308 1.7e-16 89.4 63 68.3
FvH4_5g03180 Fragaria vesca HOM05D007428 ORTHO05D009308 3.0e-16 88.6 68 69.1
Gorai.004G137700 Gossypium raimondii HOM05D007428 ORTHO05D009308 1.1e-15 86.7 71 63.4
Nitab4.5_0007906g0040 Nicotiana tabacum HOM05D007428 ORTHO05D009308 5.6e-15 84.3 94 52.1
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 5.6e-15 84.3 70 64.3
MD14G1111700 Malus domestica HOM05D007428 ORTHO05D009308 1.4e-13 79.7 67 62.7
MBI17_g11952_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 1.2e-12 76.6 50 74.0
Cfa012240 Carpinus fangiana HOM05D007428 ORTHO05D009308 3.4e-12 75.1 64 64.1
DCAR_008355 Daucus carota HOM05D001458 ORTHO05D008462 4.4e-12 74.7 70 58.6
Gohir.A02G105400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 3.7e-11 71.6 53 69.8
Sc01g0009840 Simmondsia chinensis HOM05D007428 ORTHO05D009308 6.4e-11 70.9 50 68.0
Thecc.03G286400 Theobroma cacao HOM05D007428 ORTHO05D009308 8.3e-11 70.5 50 70.0
vmacro11409 Vaccinium macrocarpon HOM05D007428 ORTHO05D009308 6.0e-09 64.3 46 67.4
CAN.G792.73 Capsicum annuum HOM05D003118 ORTHO05D009308 5.1e-08 61.2 41 70.7
HanXRQChr17g0533231 Helianthus annuus HOM05D007428 ORTHO05D009308 7.3e-07 57.4 49 59.2


User provided reference genes

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