Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G2945 Papaver somniferum HOM05D004907 ORTHO05D005707 1.6e-111 406.0 192 100.0
PSO063G4965 Papaver somniferum HOM05D004907 ORTHO05D005707 3.2e-107 391.7 190 96.8
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 9.2e-99 363.6 190 88.9
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 2.4e-86 322.4 190 80.0
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 2.0e-85 319.3 190 79.5
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 2.0e-85 319.3 190 79.5
PSO357G0455 Papaver somniferum HOM05D004907 ORTHO05D005707 9.7e-64 247.3 185 62.7
PSO170G1656 Papaver somniferum HOM05D004907 ORTHO05D005707 9.0e-62 240.7 192 61.5
TAR374G1110 Trochodendron aralioides HOM05D004907 ORTHO05D005707 3.9e-57 225.3 186 57.0
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 5.1e-57 224.9 177 59.9
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 1.1e-56 223.8 180 59.4
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 2.8e-55 219.2 182 54.9
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 3.7e-55 218.8 179 57.5
MD16G1096500 Malus domestica HOM05D004907 ORTHO05D005707 6.3e-55 218.0 179 59.2
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 1.8e-54 216.5 191 56.5
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 2.4e-54 216.1 191 53.9
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 4.1e-54 215.3 191 52.4
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 1.2e-53 213.8 188 53.2
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 2.0e-53 213.0 191 52.9
Sc04g0009300 Simmondsia chinensis HOM05D004907 ORTHO05D005707 2.6e-53 212.6 181 55.8
GSVIVG01013786001 Vitis vinifera HOM05D004907 ORTHO05D005707 3.4e-53 212.2 167 56.9
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 5.9e-53 211.5 183 54.6
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 1.3e-52 210.3 182 54.4
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 5.0e-52 208.4 191 52.4
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 5.0e-52 208.4 178 56.2
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.4e-51 206.8 185 54.6
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 2.5e-51 206.1 174 57.5
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 2.5e-51 206.1 179 56.4
Dinv15270 Davidia involucrata HOM05D004907 ORTHO05D005707 4.2e-51 205.3 167 56.9
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 5.5e-51 204.9 185 55.7
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 5.5e-51 204.9 184 52.2
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 9.4e-51 204.1 182 57.1
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 9.4e-51 204.1 188 54.3
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 9.4e-51 204.1 192 50.0
PGR119G0630 Punica granatum HOM05D004907 ORTHO05D005707 1.2e-50 203.8 180 56.1
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 1.6e-50 203.4 185 55.7
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 2.1e-50 203.0 191 52.9
Actinidia08149 Actinidia chinensis HOM05D004907 ORTHO05D005707 3.6e-50 202.2 186 51.1
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 4.7e-50 201.8 175 55.4
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 6.1e-50 201.4 175 54.9
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 7.9e-50 201.1 177 54.8
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 1.4e-49 200.3 192 49.5
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.8e-49 199.9 180 55.6
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 3.0e-49 199.1 174 55.2
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 3.9e-49 198.7 182 52.7
FvH4_4g32970 Fragaria vesca HOM05D004907 ORTHO05D005707 3.9e-49 198.7 180 55.0
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 5.1e-49 198.4 172 55.8
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 5.1e-49 198.4 183 51.4
FAN17G0584 Fragaria x ananassa HOM05D004907 ORTHO05D005707 5.1e-49 198.4 174 55.2
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 8.8e-49 197.6 174 55.2
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 1.5e-48 196.8 185 51.4
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.6e-48 196.1 181 51.9
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 2.6e-48 196.1 185 48.6
Cfa009182 Carpinus fangiana HOM05D004907 ORTHO05D005707 4.4e-48 195.3 185 50.8
Glyma.08G284600 Glycine max HOM05D004907 ORTHO05D005707 4.4e-48 195.3 175 52.6
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 5.7e-48 194.9 189 50.3
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 9.7e-48 194.1 183 49.7
CiPaw.06G069900 Carya illinoinensis HOM05D004907 ORTHO05D005707 1.3e-47 193.7 184 53.3
Glyma.18G141000 Glycine max HOM05D004907 ORTHO05D005707 1.3e-47 193.7 180 52.2
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 1.3e-47 193.7 187 51.3
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 1.3e-47 193.7 175 56.0
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.7e-47 193.4 180 52.2
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.7e-47 193.4 192 51.6
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.7e-47 193.4 181 51.9
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 1.7e-47 193.4 189 51.3
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 2.2e-47 193.0 172 51.2
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 2.2e-47 193.0 167 53.9
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 4.8e-47 191.8 181 52.5
Eucgr.H02549 Eucalyptus grandis HOM05D004907 ORTHO05D005707 1.4e-46 190.3 172 50.0
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 1.4e-46 190.3 182 50.0
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 3.1e-46 189.1 190 52.1
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 4.1e-46 188.7 181 50.8
ClCG05G025500 Citrullus lanatus HOM05D004907 ORTHO05D005707 5.3e-46 188.3 177 49.2
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 9.1e-46 187.6 175 52.6
CDE06G1150 Ceratophyllum demersum HOM05D004907 ORTHO05D005707 4.5e-45 185.3 184 45.7
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 4.5e-45 185.3 175 50.9
Sabra10G0024600 Salix brachista HOM05D004907 ORTHO05D005707 4.5e-45 185.3 189 50.8
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 5.9e-45 184.9 177 51.4
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 7.7e-45 184.5 177 46.3
COL.COLO4_24215 Corchorus olitorius HOM05D004907 ORTHO05D005707 1.0e-44 184.1 167 53.3
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 1.0e-44 184.1 179 46.9
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.7e-44 183.3 192 49.0
A09p41240 Brassica napus HOM05D004907 ORTHO05D005707 2.2e-44 183.0 185 49.7
BraA09t39619Z Brassica rapa HOM05D004907 ORTHO05D005707 2.2e-44 183.0 185 49.7
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 3.8e-44 182.2 183 47.0
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 2.5e-43 179.5 182 49.5
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 3.2e-43 179.1 190 48.9
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 4.2e-43 178.7 182 49.5
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 4.2e-43 178.7 182 49.5
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 4.2e-43 178.7 184 46.7
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 4.2e-43 178.7 177 48.0
Actinidia27794 Actinidia chinensis HOM05D004907 ORTHO05D005707 9.4e-43 177.6 172 48.8
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 1.2e-42 177.2 180 51.1
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 2.7e-42 176.0 176 48.3
Ah.03g132850 Amaranthus hybridus HOM05D000168 ORTHO05D000811 4.7e-42 175.3 182 46.2
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 4.7e-42 175.3 174 48.9
AT1G23390 Arabidopsis thaliana HOM05D004907 ORTHO05D005707 1.8e-41 173.3 185 47.0
Ca_03137_v3 Cicer arietinum L. HOM05D004907 ORTHO05D005707 1.8e-41 173.3 173 46.8
Gorai.009G337200 Gossypium raimondii HOM05D004907 ORTHO05D005707 1.8e-41 173.3 192 47.9
BcaB07g32334 Brassica carinata HOM05D004907 ORTHO05D005707 6.7e-41 171.4 181 47.0
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 6.7e-41 171.4 191 48.2
TPR.G24774 Trifolium pratense HOM05D004907 ORTHO05D005707 6.7e-41 171.4 179 46.9
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 8.8e-41 171.0 188 45.7
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 1.5e-40 170.2 188 46.3
Oeu056728.1 Olea europaea HOM05D004907 ORTHO05D005707 1.5e-40 170.2 183 48.1
CARHR023830 Cardamine hirsuta HOM05D004907 ORTHO05D005707 2.0e-40 169.9 191 46.6
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 2.0e-40 169.9 191 46.6
Sp1g20830 Schrenkiella parvula HOM05D004907 ORTHO05D005707 4.4e-40 168.7 181 48.1
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 9.7e-40 167.5 188 45.2
Phvul.002G064500 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 1.3e-39 167.2 163 51.5
Medtr5g033880 Medicago truncatula HOM05D004907 ORTHO05D005707 4.8e-39 165.2 172 47.1
Aa31LG7G7420 Aethionema arabicum HOM05D004907 ORTHO05D005707 1.2e-37 160.6 189 41.8
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 1.2e-37 160.6 191 46.6
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 1.6e-37 160.2 179 45.8
PGR102G3060 Punica granatum HOM05D004907 ORTHO05D005707 1.6e-37 160.2 187 47.6
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 2.0e-37 159.8 171 44.4
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 2.6e-37 159.5 185 47.6
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 6.5e-36 154.8 194 47.4
Nn3g16812 Nelumbo nucifera HOM05D004907 ORTHO05D005707 2.5e-35 152.9 182 47.8
Gohir.D05G315200 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.6e-34 150.2 143 54.5
Oeu056415.1 Olea europaea HOM05D004907 ORTHO05D005707 1.0e-33 147.5 191 42.4
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 6.7e-33 144.8 124 52.4
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 8.2e-31 137.9 137 51.8
Thecc.02G254800 Theobroma cacao HOM05D004907 ORTHO05D005707 8.2e-31 137.9 181 40.9
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 1.1e-30 137.5 193 44.0
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 1.1e-30 137.5 192 39.6
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 3.5e-29 132.5 185 40.5
SalBow3G2985 Salvia bowleyana HOM05D004907 ORTHO05D005707 4.5e-29 132.1 126 51.6
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 6.5e-28 128.3 192 38.0
Haze_12216 Corylus avellana HOM05D004907 ORTHO05D005707 1.4e-25 120.6 171 36.8
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 4.0e-25 119.0 185 36.2
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 9.8e-24 114.4 183 37.7
COL.COLO4_24217 Corchorus olitorius HOM05D004907 ORTHO05D005707 4.1e-22 109.0 102 49.0
Lalb_Chr09g0326261 Lupinus albus HOM05D004907 ORTHO05D005707 3.8e-20 102.4 177 34.5
Zm00001eb155550 Zea mays HOM05D004907 ORTHO05D005707 2.1e-18 96.7 189 32.8
unitig_8.g2924 Utricularia gibba HOM05D004907 ORTHO05D005707 1.4e-17 94.0 117 46.2
Os01g0704300 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 1.5e-16 90.5 177 32.8
MD13G1280300 Malus domestica HOM05D004907 ORTHO05D005707 3.4e-16 89.4 94 46.8
Os02g0465600 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 1.3e-15 87.4 118 37.3
Os09g0292900 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 1.3e-15 87.4 199 30.2
Nn2g13938 Nelumbo nucifera HOM05D004907 ORTHO05D005707 6.3e-15 85.1 94 48.9
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 9.2e-14 81.3 179 30.2
HPP92_008048 Vanilla planifolia HOM05D004907 ORTHO05D005707 9.2e-14 81.3 170 34.7
Mapoly0119s0024 Marchantia polymorpha HOM05D007853 ORTHO05D009873 1.3e-12 77.4 127 34.6
SEGI_08843 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 2.3e-12 76.6 95 37.9
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 6.1e-10 68.6 181 27.1
Pp3c10_6380 Physcomitrium patens HOM05D007853 ORTHO05D009873 3.4e-08 62.8 196 26.5
TPR.G21504 Trifolium pratense HOM05D004907 ORTHO05D005707 5.8e-08 62.0 80 36.2
TWI18G0437 Tripterygium wilfordii HOM05D007853 ORTHO05D009873 5.8e-08 62.0 194 24.7
SEGI_02257 Sequoiadendron giganteum HOM05D007853 ORTHO05D009873 9.8e-08 61.2 154 30.5
DCAR_000536 Daucus carota HOM05D007853 ORTHO05D009873 1.7e-07 60.5 132 32.6


User provided reference genes

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