Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 2026.5 1026 100.0
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 2007.6 1026 99.0
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1476.5 1035 74.0
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1473.0 1036 73.6
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1438.7 1035 73.0
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1437.9 1035 72.2
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1437.6 1036 71.2
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1436.4 1035 70.9
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1429.5 1046 70.7
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1429.1 1034 71.8
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1420.6 1041 70.4
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1419.4 1036 70.9
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1419.4 1033 71.9
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1418.3 1027 71.5
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1418.3 1041 70.3
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1415.6 1036 71.1
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1414.8 1037 71.2
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1412.9 1034 71.7
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1409.4 1029 70.8
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1399.8 1034 69.8
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1399.0 1038 70.7
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1395.2 1038 70.1
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1394.4 1030 71.4
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1394.0 1036 70.2
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1392.9 1059 69.8
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1390.6 1016 70.9
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1386.3 1034 69.8
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1384.8 1034 69.6
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1382.1 1023 70.3
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1379.0 1016 70.6
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1371.3 1060 68.5
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1371.3 1012 70.8
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1371.3 1037 68.8
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1370.5 1028 69.3
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1369.8 975 73.1
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1365.9 1043 69.0
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1365.1 1029 69.9
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1362.4 1039 69.1
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1359.7 1031 69.2
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1353.2 1029 68.8
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1352.0 1034 68.8
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1351.3 1062 67.4
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1351.3 1037 68.6
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1350.9 1027 69.8
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1350.1 1037 68.4
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1349.0 1013 68.7
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1347.0 1085 66.2
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1346.3 1022 68.2
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1345.5 1039 68.3
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1344.3 1006 69.5
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1341.3 1040 68.6
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1340.5 1041 68.3
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1340.1 1074 65.3
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1339.7 1041 68.8
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1338.2 1029 67.9
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1337.4 1041 68.6
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1337.4 939 73.8
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1337.0 1041 68.7
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1335.9 1052 68.1
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1335.1 1036 67.5
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1333.9 1047 68.0
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1332.8 1058 66.4
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1330.9 1034 68.4
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1329.7 1032 68.8
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1328.5 1034 67.4
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1328.2 1019 68.5
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1326.6 1034 67.3
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1325.8 1040 67.4
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1325.8 1036 67.9
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1322.8 993 69.7
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1322.4 1029 67.4
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1319.3 1040 67.6
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1315.8 1042 67.5
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1315.8 1042 67.5
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1310.4 1041 65.5
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1308.9 1034 66.0
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1308.9 1037 66.9
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1307.4 1035 65.9
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1302.3 1017 67.6
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1299.6 1033 66.7
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1298.1 1021 65.4
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1295.8 1015 67.6
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1287.3 1022 66.1
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1286.9 1037 66.1
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1283.1 1021 66.0
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1281.2 1024 65.6
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1280.4 1032 65.4
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1278.1 1037 64.4
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1265.0 1035 66.3
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1264.2 1035 64.8
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1261.9 1027 63.8
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1261.5 1036 65.2
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1253.0 1013 65.2
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1252.7 1012 65.4
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1251.9 1012 65.4
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1246.9 1040 64.3
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1246.9 1005 66.0
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1241.9 1038 64.7
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1241.5 1038 64.5
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1237.2 1040 63.7
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1236.1 1042 64.5
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1233.0 1049 62.2
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1232.6 901 71.5
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1231.5 902 72.1
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1228.8 1015 64.5
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1226.1 1016 64.7
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1225.7 1016 64.6
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1222.6 1034 63.1
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1218.0 1027 64.1
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1212.2 936 69.2
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1211.1 998 64.4
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1206.0 1015 63.9
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1205.7 1036 63.5
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1205.3 1048 63.1
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1201.8 1024 63.6
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1197.2 1024 63.4
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1196.8 1006 63.8
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1196.4 1043 62.8
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1188.7 1013 62.7
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1183.3 1021 62.5
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1182.9 941 65.5
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1181.4 1040 62.4
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1173.7 1009 62.9
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1158.7 1017 61.4
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1113.2 1043 59.5
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1107.4 1045 59.6
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 0.0e+00 1083.6 1059 57.3
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 3.9e-305 1051.6 862 64.3
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 3.2e-299 1031.9 903 60.9
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 6.5e-284 981.1 801 66.7
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 1.0e-281 973.8 856 61.8
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 7.0e-270 934.5 1024 54.8
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 6.1e-266 921.4 1004 51.4
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 2.7e-261 906.0 781 64.4
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 7.8e-261 904.4 1059 50.2
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 4.3e-259 898.7 1012 50.8
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 4.7e-242 842.0 988 49.6
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 8.1e-242 841.3 982 48.9
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.0e-241 839.0 983 48.5
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 2.6e-240 836.3 632 70.6
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 1.6e-221 773.9 842 50.2
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 3.9e-220 769.2 817 52.3
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 3.8e-207 726.1 912 46.6
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 6.3e-194 682.2 725 57.2
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 3.6e-189 666.4 824 49.6
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 5.7e-187 659.1 654 57.2
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 2.2e-178 630.6 956 40.9
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 4.1e-177 626.3 616 56.3
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 7.5e-155 552.4 627 51.4
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 3.3e-150 537.0 661 48.7
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 5.8e-147 526.2 613 51.4
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 6.4e-146 522.7 1123 34.8
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 4.9e-130 469.9 642 46.4
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 1.3e-114 418.7 444 53.2
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 1.1e-105 389.0 548 44.0
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.1e-100 372.5 283 68.9
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 5.5e-89 333.6 309 58.9
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 2.5e-86 324.7 243 70.0
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 3.9e-79 300.8 274 59.9
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 5.1e-71 273.9 959 29.4
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 3.2e-65 254.6 253 55.3
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 2.5e-57 228.4 711 28.0
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 3.7e-53 214.5 985 25.2
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 8.3e-53 213.4 222 50.9
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.8e-47 195.7 155 61.3
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 8.8e-47 193.4 237 43.5
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 1.2e-40 172.9 153 58.2
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 1.0e-39 169.9 153 57.5
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 7.8e-35 153.7 191 48.7
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 4.0e-31 141.4 147 49.0
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 2.9e-29 135.2 126 51.6
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 2.8e-24 118.6 110 50.9
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 3.5e-19 101.7 80 56.2
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 3.5e-19 101.7 80 56.2
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 1.2e-14 86.7 63 74.6
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 1.2e-11 76.6 60 70.0
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 1.3e-10 73.2 76 52.6


User provided reference genes

Program Settings