Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 6.8e-129 464.2 259 100.0
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 2.8e-127 458.8 259 98.8
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 1.2e-69 267.3 216 62.0
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 1.9e-67 260.0 221 56.6
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 4.0e-65 252.3 199 59.8
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 2.6e-64 249.6 258 47.7
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 2.6e-64 249.6 234 53.0
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 5.8e-64 248.4 194 58.8
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 1.7e-63 246.9 221 56.6
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 1.7e-63 246.9 217 53.9
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 4.9e-63 245.4 220 55.9
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 8.4e-63 244.6 210 56.2
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 8.4e-63 244.6 220 53.6
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 8.4e-63 244.6 220 53.6
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 9.3e-62 241.1 222 53.2
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 1.6e-61 240.4 200 57.5
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 1.6e-61 240.4 223 53.4
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 2.7e-61 239.6 216 54.2
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 2.7e-61 239.6 200 57.0
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 6.0e-61 238.4 255 48.2
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.0e-60 237.7 199 55.3
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.0e-60 237.7 199 55.3
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 2.3e-60 236.5 193 57.0
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 6.7e-60 235.0 193 56.5
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 8.7e-60 234.6 215 53.5
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 8.7e-60 234.6 193 56.5
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 8.7e-60 234.6 193 56.5
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 8.7e-60 234.6 194 58.2
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 1.1e-59 234.2 200 56.0
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 1.1e-59 234.2 193 55.4
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 5.7e-59 231.9 193 56.0
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 5.7e-59 231.9 223 51.6
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 5.7e-59 231.9 193 59.1
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 7.4e-59 231.5 191 55.0
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.3e-58 230.7 199 54.8
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 1.6e-58 230.3 192 63.5
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 1.6e-58 230.3 191 55.0
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.6e-58 230.3 262 46.9
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 2.2e-58 229.9 163 66.3
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 2.8e-58 229.6 155 66.5
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 4.8e-58 228.8 194 55.2
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 6.3e-58 228.4 191 56.0
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 1.8e-57 226.9 191 55.5
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 5.3e-57 225.3 190 56.3
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 6.9e-57 224.9 154 64.3
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 9.0e-57 224.6 204 52.9
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.2e-56 224.2 222 50.9
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 1.2e-56 224.2 222 50.9
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.5e-56 223.8 208 53.4
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 2.0e-56 223.4 212 50.0
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 2.6e-56 223.0 196 54.6
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 3.4e-56 222.6 190 55.3
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 3.4e-56 222.6 161 65.2
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 3.4e-56 222.6 192 56.8
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 3.4e-56 222.6 191 55.0
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 4.5e-56 222.2 190 56.8
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 5.9e-56 221.9 220 55.9
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 7.7e-56 221.5 192 56.2
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 1.0e-55 221.1 192 56.2
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 1.0e-55 221.1 192 56.2
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 1.3e-55 220.7 190 54.2
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 1.3e-55 220.7 190 54.2
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 1.7e-55 220.3 187 57.2
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 1.7e-55 220.3 215 48.4
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 1.7e-55 220.3 214 49.5
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 2.2e-55 219.9 191 55.5
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 3.8e-55 219.2 192 56.2
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 6.5e-55 218.4 195 54.4
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 8.5e-55 218.0 193 54.4
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 1.1e-54 217.6 230 48.7
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 1.9e-54 216.9 203 56.2
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 1.9e-54 216.9 233 46.8
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 3.2e-54 216.1 192 54.2
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 4.2e-54 215.7 192 54.2
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 5.1e-52 208.8 200 50.5
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 8.8e-52 208.0 177 55.9
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 1.1e-51 207.6 234 47.9
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 1.7e-50 203.8 181 52.5
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 9.1e-49 198.0 190 47.4
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 3.8e-47 192.6 179 53.6
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 1.1e-46 191.0 214 46.7
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.0e-44 184.5 192 46.9
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 5.7e-43 178.7 186 47.3
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.7e-42 177.2 186 47.3
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 2.2e-42 176.8 192 45.3
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 4.8e-42 175.6 212 44.8
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 1.4e-41 174.1 192 43.8
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 1.8e-41 173.7 194 42.8
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 5.3e-41 172.2 262 38.9
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 5.3e-41 172.2 155 51.0
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 9.1e-41 171.4 198 42.4
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 9.1e-41 171.4 185 45.9
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.2e-40 171.0 157 50.3
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 1.5e-40 170.6 212 41.0
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 5.9e-40 168.7 185 45.4
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 1.7e-39 167.2 173 45.7
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 2.2e-39 166.8 193 46.1
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 2.9e-39 166.4 212 40.1
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 1.4e-38 164.1 196 45.4
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 3.2e-38 162.9 235 36.6
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 3.2e-38 162.9 165 53.9
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 7.2e-38 161.8 145 53.1
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 7.2e-38 161.8 190 44.2
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 1.6e-37 160.6 206 38.8
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 2.1e-37 160.2 144 52.8
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 1.0e-36 157.9 193 38.9
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 2.3e-36 156.8 218 38.1
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 5.2e-36 155.6 193 38.3
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 8.8e-36 154.8 144 52.1
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 8.8e-36 154.8 210 36.7
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 1.5e-35 154.1 218 37.6
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 1.5e-35 154.1 208 38.5
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 1.5e-35 154.1 154 48.7
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 2.6e-35 153.3 156 47.4
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 2.2e-34 150.2 193 39.9
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 2.2e-34 150.2 193 38.9
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 2.8e-34 149.8 198 40.4
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 4.8e-34 149.1 138 52.2
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 4.8e-34 149.1 138 52.2
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 3.1e-33 146.4 152 46.1
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 7.0e-33 145.2 157 45.2
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 7.0e-33 145.2 231 36.8
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 9.1e-33 144.8 152 43.4
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 9.1e-33 144.8 200 40.0
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 1.2e-32 144.4 194 38.1
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 2.6e-32 143.3 185 38.9
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 7.7e-32 141.7 162 42.0
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 1.3e-31 141.0 191 35.6
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 2.9e-31 139.8 121 52.9
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 1.1e-30 137.9 166 40.4
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 3.2e-30 136.3 231 35.1
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 3.2e-30 136.3 199 37.2
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 1.2e-29 134.4 162 44.4
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.7e-29 133.3 174 40.2
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 6.1e-29 132.1 231 34.6
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 8.0e-29 131.7 216 35.6
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 1.8e-28 130.6 165 40.0
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 2.0e-27 127.1 178 36.0
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 4.4e-27 125.9 217 35.0
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 5.7e-27 125.6 233 33.5
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 7.5e-27 125.2 197 30.5
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 1.7e-26 124.0 196 37.2
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 4.8e-26 122.5 161 40.4
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 4.8e-26 122.5 162 38.3
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 1.7e-23 114.0 84 64.3
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 3.8e-23 112.8 222 31.5
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 2.7e-21 106.7 200 31.0
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 1.4e-20 104.4 115 40.9
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 1.5e-19 100.9 105 48.6
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 2.0e-19 100.5 105 48.6
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 9.8e-19 98.2 191 30.9
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 2.8e-18 96.7 114 41.2
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 1.6e-13 80.9 99 49.5
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 2.3e-12 77.0 153 30.7
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 6.8e-12 75.5 176 25.0
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 8.9e-12 75.1 189 26.5
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 4.4e-11 72.8 113 40.7
Aa31LG9G16510 Aethionema arabicum HOM05D004214 ORTHO05D004963 9.8e-11 71.6 53 64.2
CBR_g46605 Chara braunii HOM05D004214 ORTHO05D004963 2.2e-10 70.5 111 37.8
BolC9t55376H Brassica oleracea HOM05D004214 ORTHO05D004963 8.3e-10 68.6 67 44.8
BraA07t29702Z Brassica rapa HOM05D004214 ORTHO05D004963 4.1e-09 66.2 43 67.4
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 5.4e-09 65.9 65 47.7
Os10g0580600 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 5.4e-09 65.9 43 67.4
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 2.3e-07 60.5 84 38.1
BolC6t37070H Brassica oleracea HOM05D004214 ORTHO05D004963 3.9e-07 59.7 43 60.5


User provided reference genes

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